Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq413 118 7e-22 >seq413 Length=60602 Score = 118 bits (130), Expect = 7e-22 Identities = 325/487 (67%), Gaps = 27/487 (6%) Strand=Plus/Plus Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 |||||||| ||||| | ||| || || || ||||| || | || | |||||| || Sbjct 13921 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 13980 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544 |||| | || | || | |||| | | ||| || || |||||||||||| || Sbjct 13981 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 14040 Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604 || || || |||| |||||||| | | || | |||||| | ||| ||||| | ||| | Sbjct 14041 AATGGGACGCCGAGCCCCATGT-CAGCTGAGCGCTGGTACATCTGGCACGACAACTCACC 14099 Query 25605 GTC-GCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGC-CCAAG 25662 ||| ||| |||||||||||||| | ||| |||||| || || || || | | ||| Sbjct 14100 GTCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCAT--GTCATTAAG 14156 Query 25663 -TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGG-TTGTCC-----CT 25715 || || |||||||| ||| | ||| | | || ||| |||||| | Sbjct 14157 ATCAGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTT 14216 Query 25716 G---ATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 25772 | || | || ||| ||||| ||||| || || | ||||| || Sbjct 14217 GTGTATCACCTCAGCG---------AGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATG 14267 Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||||| ||| ||||||| | ||||||||| || || || ||||| ||||| Sbjct 14268 CATGTCGGTGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTC 14327 Query 25833 TCCATCTTCCCTGTG-CTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 ||| | |||| ||| || ||||| || | |||| | || | || ||||| ||| Sbjct 14328 TCCTACCTCCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTACCGT 14386 Query 25892 CCCAGAT 25898 ||||||| Sbjct 14387 CCCAGAT 14393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340087498369278