Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq413 118 7e-22
>seq413
Length=60602
Score = 118 bits (130), Expect = 7e-22
Identities = 325/487 (67%), Gaps = 27/487 (6%)
Strand=Plus/Plus
Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484
|||||||| ||||| | ||| || || || ||||| || | || | |||||| ||
Sbjct 13921 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 13980
Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544
|||| | || | || | |||| | | ||| || || |||||||||||| ||
Sbjct 13981 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 14040
Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604
|| || || |||| |||||||| | | || | |||||| | ||| ||||| | ||| |
Sbjct 14041 AATGGGACGCCGAGCCCCATGT-CAGCTGAGCGCTGGTACATCTGGCACGACAACTCACC 14099
Query 25605 GTC-GCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGC-CCAAG 25662
||| ||| |||||||||||||| | ||| |||||| || || || || | | |||
Sbjct 14100 GTCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCAT--GTCATTAAG 14156
Query 25663 -TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGG-TTGTCC-----CT 25715
|| || |||||||| ||| | ||| | | || ||| |||||| |
Sbjct 14157 ATCAGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTT 14216
Query 25716 G---ATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 25772
| || | || ||| ||||| ||||| || || | ||||| ||
Sbjct 14217 GTGTATCACCTCAGCG---------AGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATG 14267
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
|||||| ||||||| ||| ||||||| | ||||||||| || || || ||||| |||||
Sbjct 14268 CATGTCGGTGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTC 14327
Query 25833 TCCATCTTCCCTGTG-CTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891
||| | |||| ||| || ||||| || | |||| | || | || ||||| |||
Sbjct 14328 TCCTACCTCCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTACCGT 14386
Query 25892 CCCAGAT 25898
|||||||
Sbjct 14387 CCCAGAT 14393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340087498369278
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |