Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq7802 105 4e-18 seq4366 91.5 9e-14 >seq7802 Length=1410 Score = 105 bits (116), Expect = 4e-18 Identities = 221/325 (68%), Gaps = 7/325 (2%) Strand=Plus/Minus Query 72246 GGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA-GA 72304 ||| || | ||| | || |||||||||||||| || ||| || || | || || || Sbjct 1087 GGTCTGCGAATGGTCATCATCGACTACCTGCAGCTGATGTCGGTGCCGG-GCAACAGTGA 1029 Query 72305 TAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATT 72364 ||||| || |||||| | || || || || || |||| |||| |||||| | Sbjct 1028 AAACCGCGCGACCGAAATTTCGGAAATCTCGCGTGGTCTCAAGGGCCTGGCCAAGGAACT 969 Query 72365 ACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAA 72424 | || |||||| | || |||| || || || || ||||| ||| ||| | ||||| Sbjct 968 CAATGTGCCGGTGATTGCGCTGTCGCAGCTCAACCGCTCGCTGGAAACCCGTACCGACAA 909 Query 72425 ACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGAT 72484 || ||||| | | || || || ||||| || ||||| ||||||||||| ||| |||| Sbjct 908 GCGCCCGGTGATGGCCGACTTGCGCGAATCCGGCGCAATCGAGCAGGACGCCGACATGAT 849 Query 72485 TATGTTTCTGTATCGCGACGAAGTTTATCACCCGGA----TAGCGAAATGAAGGGCATTG 72540 | || | || |||||||| || || ||| | || || |||||| | | Sbjct 848 CGTCTTCATCTACCGCGACGATTACTACAACAAGGAAAATTCGCCGGAT-AAGGGCCTGG 790 Query 72541 CCGAGGTAATTATCGGAAAGCAACG 72565 ||||| | || ||||| ||||| || Sbjct 789 CCGAGATCATCATCGGCAAGCACCG 765 >seq4366 Length=2654 Score = 91.5 bits (100), Expect = 9e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8226 CATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGAT 8285 |||| || || ||||| |||||||| || |||| |||||||||||||||||||||||||| Sbjct 833 CATCCACGCCGATGTGCGCCTTCATCCCGAAGTACCACTGATTGCCTTTCTTGGTCTGAT 892 Query 8286 GCATCTCCGGATCGC 8300 |||| || || |||| Sbjct 893 GCATTTCAGGGTCGC 907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303190534023606