Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq6103 89.7 2e-13 >seq6103 Length=1793 Score = 89.7 bits (98), Expect = 2e-13 Identities = 174/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 11242 CCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTG 11301 |||||||||||| | || | |||||| ||||||||| | ||| ||| |||||||| Sbjct 368 CCACTTGCGGGTTTGCAGACGGCCTTCAATGTAGACCGGACGGCCTTTTTTCAGGTATTC 427 Query 11302 CGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTG 11361 | ||||| |||||||| || | | | ||| | |||||| ||||| ||||| Sbjct 428 ACCAGCGATCTCGGCCAGTTTGCGATAAATCACAATATTGTGCCATTCGGTTTTTTCCTG 487 Query 11362 CTGCTGGCCGGTCTG-CTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGA 11420 || || | | ||| ||||||||||||| |||| | || || | ||||| | || | Sbjct 488 CT--TGAC--GCCTGACTTGTCTTTCCAGTTTTCAGTCGTCGCAATACTGAAGTTGGCAA 543 Query 11421 CCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGA 11480 |||| | || ||| || | | | ||||| || | ||||||| || |||| | Sbjct 544 CCGCTTCACCATTCGGCATAAAGCGCACTTCTGGGTCACGCCCCAGATTACCCACCAAAA 603 Query 11481 TTACCTTGTTCACT 11494 | || || |||||| Sbjct 604 TAACTTTATTCACT 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208468488458776