Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_006552.1
Length=65195
Score E
Sequences producing significant alignments: (Bits) Value
seq6103 89.7 2e-13
>seq6103
Length=1793
Score = 89.7 bits (98), Expect = 2e-13
Identities = 174/254 (69%), Gaps = 5/254 (2%)
Strand=Plus/Plus
Query 11242 CCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTG 11301
|||||||||||| | || | |||||| ||||||||| | ||| ||| ||||||||
Sbjct 368 CCACTTGCGGGTTTGCAGACGGCCTTCAATGTAGACCGGACGGCCTTTTTTCAGGTATTC 427
Query 11302 CGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTG 11361
| ||||| |||||||| || | | | ||| | |||||| ||||| |||||
Sbjct 428 ACCAGCGATCTCGGCCAGTTTGCGATAAATCACAATATTGTGCCATTCGGTTTTTTCCTG 487
Query 11362 CTGCTGGCCGGTCTG-CTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGA 11420
|| || | | ||| ||||||||||||| |||| | || || | ||||| | || |
Sbjct 488 CT--TGAC--GCCTGACTTGTCTTTCCAGTTTTCAGTCGTCGCAATACTGAAGTTGGCAA 543
Query 11421 CCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGA 11480
|||| | || ||| || | | | ||||| || | ||||||| || |||| |
Sbjct 544 CCGCTTCACCATTCGGCATAAAGCGCACTTCTGGGTCACGCCCCAGATTACCCACCAAAA 603
Query 11481 TTACCTTGTTCACT 11494
| || || ||||||
Sbjct 604 TAACTTTATTCACT 617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 208468488458776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |