Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq40 123 4e-24 seq66 118 2e-22 >seq40 Length=70910 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| |||||| || |||||||| || || |||||||| || || Sbjct 48794 CGCCAAGCGTCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATTACCAAGCCTGCGAT 48853 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||| || || || ||||| | ||||| | | || ||||||| Sbjct 48854 CCGTCGTCTCGCACGTCGCGGCGGTGTGAAGCGCATTTCTGGCCTCATTTACGAAGAGAC 48913 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | |||||| ||| ||| |||| || | | ||| || || Sbjct 48914 CCGTGGCGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCAGTGACCTACACGGA 48973 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || || || | ||||| |||| || ||| | || || || || Sbjct 48974 GCACGCCCGCCGCAAAACGGTGACGGCTATGGACGTCGTGTACGCACTCAAGCGCCAGGG 49033 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 49034 CCGCACTCTGTACGGTTTCGG 49054 >seq66 Length=63280 Score = 118 bits (130), Expect = 2e-22 Identities = 185/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | || || || || |||||||| || || |||||||| || | Sbjct 37886 CGCCAAGCGTCATCGCAAGGTC-CTACGCGACAACATCCAGGGCATTACCAAGCCTGCGA 37828 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||||||||| || || |||||| |||| || | | || || |||| Sbjct 37827 TCCGTCGTCTCGCTCGTCGTGGCGGTGTGAAGCGTATCTCGGGTCTCATTTACGAGGAGA 37768 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| | |||||| ||| ||| |||| || | || || || | Sbjct 37767 CGCGTGGGGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACATACACGG 37708 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || ||||| || || || | ||||| |||| || || | || || || | Sbjct 37707 AACATGCGCGCCGTAAAACCGTGACGGCTATGGACGTCGTGTACGCGCTTAAGCGCCAGG 37648 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | | || || ||||| Sbjct 37647 GACGCACGCTGTACGGCTTTGG 37626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064149685598