Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7203 170 2e-37 seq4369 143 3e-29 >seq7203 Length=1522 Score = 170 bits (188), Expect = 2e-37 Identities = 614/944 (65%), Gaps = 49/944 (5%) Strand=Plus/Plus Query 21116 AAAATATTT---AT-TTAAAAATCAGCATCTAATGAGAAA-ACATTATCTTCtttttttG 21170 ||||||||| || |||||| || |||| | |||||| ||||| || |||| | | Sbjct 601 AAAATATTTTGTATCTTAAAATTCTTCATCGAGCGAGAAAGACATTTGCT-CTTTCTGAG 659 Query 21171 ACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTT 21230 |||||| ||| |||||| || |||| || | ||||||||| ||||| || || |||| Sbjct 660 ACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTT 719 Query 21231 CCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAAC 21290 || || || ||||| ||||| || ||||| | ||| | ||||||||| | Sbjct 720 GTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTC 779 Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 | | | | || | ||| || ||||| || || ||||| ||||||| ||| || Sbjct 780 CTAATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCAT 839 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 |||| || ||||| ||||| || || | || | || |||||| || || | Sbjct 840 TCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTG 899 Query 21411 CTTCAACAATTATATTTATTATCCTAGATGTACT-AGGGGGATAC--------AAT--AA 21459 | || || | | | ||| ||||| | || |||| |||| ||| || Sbjct 900 CATC-----TTTCACTAA--ATCGTAGATTTTCTGAGGGTCATACTTGTTCTGAATGTAA 952 Query 21460 TTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTC 21519 || | | | | |||||| ||||| |||| || || |||||||| | | ||||| || Sbjct 953 TTAGT-ATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTC 1011 Query 21520 ATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-A 21578 |||||| ||||| | ||| |||||||| || | ||||| ||||| ||||| || ||| | Sbjct 1012 ATTAGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGA 1070 Query 21579 ATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG 21638 ||| ||||| |||||||| || || || | |||||||| | | || ||| || Sbjct 1071 ATGAGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCA----ATA 1126 Query 21639 TAGATTCT-TTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA 21697 || ||| ||||| | |||| ||||| | || |||| || | ||| | Sbjct 1127 AAGTTTCCGTTATCAA---TCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGA 1183 Query 21698 ATTGTATCAATAGCTTTTAAAAGATGAtttttttCA-TCTACATCGGTTATGNNNNNNNN 21756 || || || || || || || ||| | || || ||| | | || Sbjct 1184 ATATGGTCTATGGCATT--AAGCAT--TTTATCTCGCTCAACAGGGTCTTTGATATAAGA 1239 Query 21757 NNNNNNNNNA--CTA-TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTA 21813 | | | || |||| ||||| || ||||| ||| ||||| || || || Sbjct 1240 ATCAATCAGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATA 1299 Query 21814 AAAACATCTTGCCTCTGAACATTGAACCTCGGA-ATAAAATCGTTGA--GCCAAGTTTTC 21870 |||||| |||| || | | |||| || || ||||||| ||| ||||||||||| Sbjct 1300 GAAACATTTTGCTTCGGCAAATTGTACACGAGAGATAAAAT---TGACTGCCAAGTTTTC 1356 Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 ||| || || |||||| || |||||||| ||||||| || ||||||| || || Sbjct 1357 ATTAACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTC 1416 Query 21931 GTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGT 21990 ||| | | ||| ||| ||| ||||| ||||| |||| |||||| | ||| Sbjct 1417 ACCATCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGT 1476 Query 21991 CCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCAT 22034 ||| || ||| | |||||||| | ||||||||||| Sbjct 1477 CCAGAATGAAGCCTCATGTTTTTTATAAAATTGCCAGATATCAT 1520 >seq4369 Length=2652 Score = 143 bits (158), Expect = 3e-29 Identities = 383/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||||||| | ||||| || | | || ||||||||||| || || ||||| Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 |||||||| || | ||||| |||||| | || || || || ||||| ||||| || Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 ||||| || || || |||| | || ||| | ||||| |||| ||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTCTTC------TAT 2445 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTT--AATACAATCAATTGTATCAATAGCTTTT 21715 ||| || |||||||||||| |||||| ||| ||| ||||| | || || Sbjct 2444 CCACTTCAGTGCCCATTTTGC--TTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGA 2387 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || | | ||||| | |||| | || | || | Sbjct 2386 AATAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTC 2327 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 |||| |||||| ||||| ||| ||||||||||| || | ||| | |||||| | Sbjct 2326 TCAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACC 2267 Query 21836 TGAACCTCGGA-ATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 || ||||| ||||||| ||| | ||| ||||||||||| ||||| || || Sbjct 2266 TGCACCTCTTTCATAAAATTCAC-AGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGC 2208 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 ||| || ||||| |||| || |||| || ||| | ||| ||| |||||||||| Sbjct 2207 AAAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATC 2148 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 || || | || ||||| | |||||||| ||||||||| || ||| ||||| Sbjct 2147 CGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTT 2088 Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061 ||||| ||| ||||||| || | || ||| ||| ||||||| Sbjct 2087 ATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACC 2041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531820443086640