Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq5177 100 3e-16 >seq5177 Length=2144 Score = 100 bits (110), Expect = 3e-16 Identities = 184/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 43546 GTTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTG 43605 || || || ||||| | || ||| | | |||||||||| ||| || ||||||||| Sbjct 37 GTGGCGCGGTATGACCAGCAGAAATACCCGGTATTCGAAAAACTGATCGAGAAACAACTG 96 Query 43606 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAA 43665 |||||||||||||| |||||||| |||||| |||| |||||| | ||| Sbjct 97 TCATTCTTCTGGCGTCCGGAAGAGGTGGATGTGTCACAGGACCGTTCTGATTATCAGGGC 156 Query 43666 ATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGAT 43725 |||| || || || || ||| || ||||| | || || || ||| | ||| Sbjct 157 CTGCCCGAGCATGAAAAGCACATCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGAT 216 Query 43726 ACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCA-AT 43784 |||| ||||| ||| |||||||| |||| || || ||| | | || || | | || Sbjct 217 TCCATCCAGGGCCGTAGCCCTAACGTGGCTTTGCTACCGCTGGTGTC-ATTGCCTGAGAT 275 Query 43785 GGAAACGTGGATCGAAACATGGGCTTT 43811 ||||| ||||| ||||| ||||| || Sbjct 276 TGAAACCTGGATAGAAACCTGGGCGTT 302 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 44116 CTGGAAGCGATTCGTTTCTATGTCTCGTTTACCTTTACGTTCAACTTTGCCGAACAGGGC 44175 ||||||||||| || ||||| ||| || ||| | ||| |||||||| || || Sbjct 571 CTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTTGCCG---AGCGC 627 Query 44176 AA---GATGGAAGGTAACGCAAAGATCATGCGTCTGATTGCCCGTGATGAAGCACTTCA 44231 || ||||||||| ||||| |||||||| || |||||||| ||||||||||| || || Sbjct 628 AAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAAGCCCTGCA 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577384758417600