Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq6992 266 8e-67 seq6336 226 7e-55 seq6999 114 3e-21 >seq6992 Length=1569 Score = 266 bits (294), Expect = 8e-67 Identities = 706/1067 (66%), Gaps = 31/1067 (3%) Strand=Plus/Plus Query 24737 AGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAGCTCGATGA-GGTCGCG 24795 || |||| |||||||| |||||| | ||||| || |||| |||||| | || | || Sbjct 458 AGATCCACGCCGTTGACGATCTCGATCATGTTCATCAAATCGATCTCGATTACGGGCACG 517 Query 24796 CCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTTGAATTTAGTGTCTTC 24855 || ||| | ||||||||||||||||||| ||| ||| | || | ||||| || Sbjct 518 CC-GTTGATACTCAGCTTGTAGTAGCTGGCCGACGTCTTGACCGAAAACTCGGTGTCATC 576 Query 24856 CTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTTCACTACCACTTCGAT 24915 | ||| |||| || || ||||| | ||| ||||| ||| || | ||| | Sbjct 577 GCCGGACTTGCCGGTACCGGGATCAATCTCCTTGTGACGGCCGCGCACAACAATTTCCAC 636 Query 24916 CTGGTCGTGCTTCTTGCTGTCCTCGCGACGATAGCCGCCGGCGAAGCGCAGCAGCACGCC 24975 | || || || || ||||| | ||| ||||||| ||||||||| ||||| | Sbjct 637 CGCATCCACCTCGGTGGAATCGTCGCGCTGGTAGGCGCCGGCAAAGCGCAGCTGCACGGC 696 Query 24976 GTCGTGCTGTACGGCGCCGTACTGTTCGAGCACTTCGACCATGAAGCCGCCGCACGTCCA 25035 || |||| |||||||||||| | || || | ||| | |||||||||| |||| Sbjct 697 GTTGTGCGTGGTGGCGCCGTACTGATTCAGTACGCTGCGCATCAGGCCGCCGCACTTCCA 756 Query 25036 CTCGAGCTGGAGCTCTTCGCTGCCGTAGTCGATTTTCACGGGGCCGGTCATGCCGCTGCC 25095 ||||||| || || || |||| ||||||| | || ||||| |||| |||| ||| Sbjct 757 TTCGAGCTCGATCTTCTCCTGGCCGAAGTCGATGTCGACCGGGCCATTCATACCGCCGCC 816 Query 25096 CTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAAGATTGAGCTCTTCGACTTCGCCCAC 25155 | || | ||||||||||| ||| | || || || | || | || | ||| | Sbjct 817 GCGATACTCCTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTTCGACCACCTGGCCGAG 876 Query 25156 GAAGTTCGCGCCGTTGTGAAAGACGTTGAAGCCCTTCAGTTTTCGAGGCATACCCATTGC 25215 || || | |||| || || | ||||| | || ||||| |||| | |||| | Sbjct 877 ATAGCTCTCACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTCTTGGGCAAAGCCATGGG 936 Query 25216 ATTTGACTCCTG-----TTAGCC-----CGCCACGCG----CGC---CGG-GAAATCGGC 25257 || |||| | | || | || ||||| ||| ||| ||| ||||| Sbjct 937 GTT---CTCCGGGAATCTGAGGCGGGTGCGTTACGCGTTGACGCGTTCGGCGAAGTCGGC 993 Query 25258 GAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGT 25317 ||| ||| | |||||| || | |||| || || || || || || |||||||| Sbjct 994 CAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAAGTTCTCCAGCGGTGGCACCGGCGT 1053 Query 25318 GTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTCGGC-TCCG 25376 |||||||||||||||| | | ||| ||||| || ||| |||| | | | Sbjct 1054 GTAGTCGTAATCGATGCGCAGCGCGCCATCGGCGAGCGTGGTGGCGCTGTTGACCATGCC 1113 Query 25377 GATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG-CGACCT--GCTGCCGAAACC 25433 | ||| ||| ||| | | |||||| |||||| || |||| | | | || ||| Sbjct 1114 G-TCGTACCAGGCGTTGGCATCGATCAAGTAGCC---CGACGACTTCAGGTCGCGGAACT 1169 Query 25434 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 25493 | ||||||| |||| | | || | | ||||| || | || ||| ||||||| Sbjct 1170 TGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGGGTGCATCGGTTTGTCGACGT 1229 Query 25494 CGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 25553 | | | |||||||||| | ||| | | ||| |||||||||||| ||| Sbjct 1230 AGAACGCCACGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCT 1289 Query 25554 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGC 25613 |||| |||||| | || |||| |||||||||| |||||||| || ||||||| Sbjct 1290 CGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGA 1349 Query 25614 GGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCT 25673 |||| ||||| || | ||| |||||| ||| ||| |||||||| ||||| |||| Sbjct 1350 ACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGATCCT 1409 Query 25674 GCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAA 25733 ||| |||||| ||| || | |||||||| ||||| |||| || || || | Sbjct 1410 GCAGATCCCAATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACA 1469 Query 25734 TCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCG 25780 ||||||||||||| ||| |||||||||| || |||| |||| Sbjct 1470 GGCTCTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCG 1516 Score = 104 bits (114), Expect = 6e-18 Identities = 240/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 24227 TTCGGCCAGGGAGAAGGCGGCCATATCGCGCGGCGTCCAGCCAAACACCGTCGCGATATC 24286 |||| ||| || || || |||| || ||||| |||| || | | |||||| || Sbjct 2 TTCGTGCAGCGACCAGCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTC 61 Query 24287 GGCCATCGCGTCTTCTACGCGGGCCGGGATTCCATGCTCGCTTTCAGCGCCTTCGGCATC 24346 ||||||||| || ||||||| | | || | ||| ||| | | | | |||||||||| Sbjct 62 GGCCATCGCATCCTCTACGCAGTCGGGAAATCC--GCTTCCCT-CTGGGCCTTCGGCAAG 118 Query 24347 AAAAAA-CCGGCGAAGATACCCCCCAAC-GCCACGAGGTCGGCCGGGTCCATGCCGGCCA 24404 |||||| || || | | | || || |||| ||||||||||| ||||| | | Sbjct 119 AAAAAAACCTGC--ACCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGA 176 Query 24405 CGTCGAACTCGGTCAGCGTCGGCGTGCTGATGCGCGGCAACA-CCTTGCGCAGCGCGTCG 24463 ||||| ||||||||| |||| | ||||| |||| || |||| ||||||| | Sbjct 177 CGTCGGCGGTGGTCAGCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGC-CAGCGCGGTG 235 Query 24464 ACATCGAGATTCACGAGTGCGGCGAGCGACGTGCCGCGCAGCGCGCCCGCGGCTGGCTTG 24523 ||||| || | || | ||| |||| ||||||||| |||| ||| | |||||| Sbjct 236 ACATCCAGCTGCAGCACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTG 295 Query 24524 CGCAACGTCACCTGCGTAATGGTCTGCCCTTCGCGCTCGATCGGTGTGTCGAG 24576 || | | | | | || ||||||||| | ||||| ||| || |||||| Sbjct 296 CGGACCTTGAGGTCGGTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAG 348 >seq6336 Length=1727 Score = 226 bits (250), Expect = 7e-55 Identities = 274/364 (75%), Gaps = 12/364 (3%) Strand=Plus/Plus Query 3427 CCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATA 3486 ||| || || || || |||||||| ||| ||||||||||| |||||||||||||||| Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420 Query 3487 CTTTTGGGT-TCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACA 3545 ||| ||| | || |||| ||| |||||||||||||| ||||||||||||||||| Sbjct 1421 CTTCTGGACCTACGG-GTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACA 1479 Query 3546 AGCGCTGGCGCAAGACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGT 3605 || ||||||||||| ||||||||||| || || ||| | | |||||||| ||| ||| Sbjct 1480 AGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGT 1539 Query 3606 TCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG-AGCGCATCCAGATCGA- 3663 | |||| ||||| || | || | | || | |||| |||| |||| ||||||||||| Sbjct 1540 TTTGGACCGGCGAGCGC-CGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGAT 1598 Query 3664 --CACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGA-CGCGCAGTGGCGGCA 3720 | || ||||| ||||| | |||| ||| |||| ||||| |||||||| Sbjct 1599 GTCTCG---CACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGC-CTGGCGGCA 1654 Query 3721 GATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCT 3780 |||||| | | | ||||| || | | ||||||||||||||||| ||||||||||| Sbjct 1655 GATCGTCAACATCCTCGACGCCCAGCGCCGTGGCTGCGACCTGTTCGATATCGACGAGCT 1714 Query 3781 GCGC 3784 |||| Sbjct 1715 GCGC 1718 Score = 125 bits (138), Expect = 2e-24 Identities = 299/446 (67%), Gaps = 22/446 (5%) Strand=Plus/Plus Query 2890 CGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGAGAA 2949 ||| |||||||||| | | ||||||| |||| || | ||| |||| |||| | | Sbjct 926 CGTTGAGCGCATCGGTGGCGCACTCGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGA 985 Query 2950 GAAGGACGGTGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 3009 ||| ||| | || | ||||||||| || ||||| || || | ||||| | || Sbjct 986 AAAGTCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGC 1045 Query 3010 GCGCGT---GCGCAAGTACGACGAGACGGGG--AAGGAATCGGATCTGAACCCGAAGATT 3064 |||| | |||| ||| | || ||| | || ||| | |||||||| ||| | Sbjct 1046 GCGCATCCAGCGC---TACCA--AGGCGGCGGCAACGAAGCCGATCTGAATCCGGCTGTC 1100 Query 3065 GCGTCGCGCAACGCCGGCCCGAA-----ACGCCGTGCGCCCCGTAACGAAATCAGCGACG 3119 || |||||||| | || || | || |||| ||||| ||| || | Sbjct 1101 GCCAATCGCAACGCTGCGCCAAAGAAAAAACCCAAGCGC-----AACGACTTCACTGAAG 1155 Query 3120 AACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTG-TTCGACTATCAGAAAGTC 3178 ||||| | ||| | | | |||||| ||| |||| |||||||| ||| | Sbjct 1156 AACAGGTCGAGCAGCTGACCACCGCGTTCGTCGACG-GCTGCTTCGACTACCAGCGCGAT 1214 Query 3179 TGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCG 3238 ||||| ||| |||| | ||||||| |||| |||||| || ||||| ||||||||||| Sbjct 1215 TGGTACCGGGCCGGCAACGAGCGCACCCGCATCATCCTCAAGTCGCGCCAGATCGGTGCA 1274 Query 3239 ACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATC 3298 |||| |||||||| ||||| ||||| |||| || ||| ||||| || ||||| || Sbjct 1275 ACGTTTTACTTCGCTCGCGAAGCGCTGATCGATGCGCTCACCACCGGGCGCAATCAGATT 1334 Query 3299 TTCCTGTCGGCGAGCAAGGCTCAGGC 3324 ||| || || |||||| ||||| Sbjct 1335 TTCTTGAGCGCCTCCAAGGCGCAGGC 1360 Score = 98.7 bits (108), Expect = 2e-16 Identities = 169/240 (70%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 2169 GGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCGACGAGATACGCCTCGCCGAT 2228 |||||| ||||| ||||| |||||| |||| || |||||||||||||||| |||| | Sbjct 209 GGTGCCCAGGCTGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGT 268 Query 2229 GTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGAAGAGCTTCTG---GCGCTTCTTCGA 2285 || |||||| | | | |||||| ||| |||||||||| | ||| || || Sbjct 269 GTTGGCGAATTTCTCCTGCACCTCGATGCTGGTGTAGAGCTTCTGCTTGGACTTGTT-GA 327 Query 2286 CAGTGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGCGCCATCTTCCCTTTCAG 2345 || || || ||| ||||||| |||||||| ||| ||||||||| | ||| | Sbjct 328 TGGT--GATCAGGTCGGCGGTCGGCTCGATCTGGGCAAACAGCGCCA--GGCGCTTGGTG 383 Query 2346 CGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCACGTCGCCATACGCGCCGAACGG 2405 | | || |||| ||| | || |||| || | || ||||||||||| | |||||| Sbjct 384 CCATCGATC-TCGACCTCTTCGGCTTTCACTGCAGTGACATCGCCATACGCACGGAACGG 442 >seq6999 Length=1567 Score = 114 bits (126), Expect = 3e-21 Identities = 506/778 (65%), Gaps = 30/778 (4%) Strand=Plus/Plus Query 19732 TTTCGAGCTCGAGCGCGGTCGTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTC- 19790 |||| |||| ||||| ||| ||||||| || | || || |||||| ||||| || | Sbjct 487 TTTCAAGCTTGAGCGATGTCTTGAATCCGTCGCCCCCAATAGTGTGCAGTGTCT-CTCCG 545 Query 19791 ACGAGCCACGGCGTCTCGT--CGATTTCCGGTTTGAAGCCTGACACGGTCACGGGCATTT 19848 | ||||| |||| ||| |||| || || || || || | ||||| ||| | Sbjct 546 ATAAGCCA--GCGTTGCGTATCGATCTCAGGCTTTAAACCGCTAAACGTCACCCGCAGCT 603 Query 19849 CCGGGAACAGTTCGGCGCGGCCGCGCGCGAGCGTGTAGCTC-ATCGTCGCCTGGCTGCGC 19907 | || || | || || |||||| | || | |||||| ||| | | ||||| || ||| Sbjct 604 CGGGAAAGACATCCGCCCGGCCGAGAGCCAACGTGTA-CTCGAACTTCGCCACGCCGCGT 662 Query 19908 TGCATCCGCTTGAACTCCGCTTGCGCG-GCAGCGCGCGCTTCCGCCTCCGTTGCGTAGTC 19966 | || ||||| | |||||| ||||| || | ||| || ||||| || || Sbjct 663 TTCACCCGCTCCAGCTCCGCATGCGCATGCTG-GCGTGCCGTTGCCTCATCGGCATACGA 721 Query 19967 TTCCGGCAGCACCTTCACGTTCTTGTTGTTCTCGCCGCCGACGATGACCGACTTCCGCTT 20026 || |||| ||| |||| | || || |||||| | ||||||| |||| Sbjct 722 CTCGCGCAGGCGCTTGGCGTTGTCGTCTTT------GCCGACCAGCACCGACTGCCGCCG 775 Query 20027 CGCGCGGCCG--GTCGAATGGTAGTGCGCGCGCACGGCCGCGTAGTTCTCGCGTTCGGAC 20084 || ||| ||| | ||| |||||||||| | | |||| ||||| |||| Sbjct 776 TGCCTTGCCTTTGTCCACCC--AGTACGCGCGCACGCCGGTGTAGGCATCGCGGTCGGCA 833 Query 20085 ACGTGGTAACGATGACTGTCGCCGCTCGCGC-GCGTCAGTTCGAGCACGTCG--AGCTGC 20141 ||| |||||| || |||||| |||||| ||||||| || || |||| ||| | Sbjct 834 ACGGAGTAACGGTGTTGGTCGCCT-TCGCGCCGCGTCAGGGTGA-CA-GTCGGCAGCGGT 890 Query 20142 TTTCCGCTCGCCGTCTGGCCGGTGCCGATCGGCATGAACAGCAAGCGTAGATCCTTCACG 20201 || ||| |||| || ||||| |||||||||| |||| ||| | |||| || Sbjct 891 TTGCCGGTCGCTGTGGTGCCGGCGCCGATCGGCGCAAACACCAATGCTCCTGCCTTGACC 950 Query 20202 TTCATGACGGCGTCGTAGCGCTTCGCCAGACGCGTAAGAAACGACATGTCCGATTCGTGC 20261 | ||| || ||| |||||| |||| ||||| || | ||| || |||| Sbjct 951 GTGGCGACCGCATCGAAGCGCTGGCCCAGGCGCGTGAGCAGATTCATATCGCTCTCGTTG 1010 Query 20262 GTCTGGTCGATGTGCGCGATCAGGATCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAGC 20321 | |||||||| || | | | | || ||||| || | ||| ||| | ||| Sbjct 1011 GCCTGGTCGAGATGGGGCAACTTAGTGCGTGCCAGCGCCTCCGCCACGCGCGGGGTCAGT 1070 Query 20322 GAGTAGCGC-CCGGCGATCGCGTGGACGATCGAGCCGATCGTC-TGCCGATGCCAGCTCT 20379 | || | ||||| | | | || | | ||| | ||| || | |||||||| Sbjct 1071 CCAT-GCTCGCCGGCCAGGGTATTGAGCACGGCGCCCAACGTGGTGTTG-TGCCAGCTGC 1128 Query 20380 TCTCGCGGCGCTCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGATGA 20439 |||||| ||| ||||| | |||| | || |||||||| | |||||||| Sbjct 1129 GCTCGCGCCGCGTGCGCATGTCTGCAGTCAGATCCGCACTACGCGCGCGCACGGTGATGA 1188 Query 20440 TGTCCGGCGCGCCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGAG 20497 |||| ||||||||||||| ||| || |||| ||| | |||| |||| |||||||| || Sbjct 1189 TGTCGGGCGCGCCGCTGTACTCCACCTCGTCCACGATGAAGGTGCCTTTGTCGACCAG 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120305931063932