Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_007145.2
Length=37639
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 266 8e-67
seq6336 226 7e-55
seq6999 114 3e-21
>seq6992
Length=1569
Score = 266 bits (294), Expect = 8e-67
Identities = 706/1067 (66%), Gaps = 31/1067 (3%)
Strand=Plus/Plus
Query 24737 AGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAGCTCGATGA-GGTCGCG 24795
|| |||| |||||||| |||||| | ||||| || |||| |||||| | || | ||
Sbjct 458 AGATCCACGCCGTTGACGATCTCGATCATGTTCATCAAATCGATCTCGATTACGGGCACG 517
Query 24796 CCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTTGAATTTAGTGTCTTC 24855
|| ||| | ||||||||||||||||||| ||| ||| | || | ||||| ||
Sbjct 518 CC-GTTGATACTCAGCTTGTAGTAGCTGGCCGACGTCTTGACCGAAAACTCGGTGTCATC 576
Query 24856 CTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTTCACTACCACTTCGAT 24915
| ||| |||| || || ||||| | ||| ||||| ||| || | ||| |
Sbjct 577 GCCGGACTTGCCGGTACCGGGATCAATCTCCTTGTGACGGCCGCGCACAACAATTTCCAC 636
Query 24916 CTGGTCGTGCTTCTTGCTGTCCTCGCGACGATAGCCGCCGGCGAAGCGCAGCAGCACGCC 24975
| || || || || ||||| | ||| ||||||| ||||||||| ||||| |
Sbjct 637 CGCATCCACCTCGGTGGAATCGTCGCGCTGGTAGGCGCCGGCAAAGCGCAGCTGCACGGC 696
Query 24976 GTCGTGCTGTACGGCGCCGTACTGTTCGAGCACTTCGACCATGAAGCCGCCGCACGTCCA 25035
|| |||| |||||||||||| | || || | ||| | |||||||||| ||||
Sbjct 697 GTTGTGCGTGGTGGCGCCGTACTGATTCAGTACGCTGCGCATCAGGCCGCCGCACTTCCA 756
Query 25036 CTCGAGCTGGAGCTCTTCGCTGCCGTAGTCGATTTTCACGGGGCCGGTCATGCCGCTGCC 25095
||||||| || || || |||| ||||||| | || ||||| |||| |||| |||
Sbjct 757 TTCGAGCTCGATCTTCTCCTGGCCGAAGTCGATGTCGACCGGGCCATTCATACCGCCGCC 816
Query 25096 CTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAAGATTGAGCTCTTCGACTTCGCCCAC 25155
| || | ||||||||||| ||| | || || || | || | || | ||| |
Sbjct 817 GCGATACTCCTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTTCGACCACCTGGCCGAG 876
Query 25156 GAAGTTCGCGCCGTTGTGAAAGACGTTGAAGCCCTTCAGTTTTCGAGGCATACCCATTGC 25215
|| || | |||| || || | ||||| | || ||||| |||| | |||| |
Sbjct 877 ATAGCTCTCACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTCTTGGGCAAAGCCATGGG 936
Query 25216 ATTTGACTCCTG-----TTAGCC-----CGCCACGCG----CGC---CGG-GAAATCGGC 25257
|| |||| | | || | || ||||| ||| ||| ||| |||||
Sbjct 937 GTT---CTCCGGGAATCTGAGGCGGGTGCGTTACGCGTTGACGCGTTCGGCGAAGTCGGC 993
Query 25258 GAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGT 25317
||| ||| | |||||| || | |||| || || || || || || ||||||||
Sbjct 994 CAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAAGTTCTCCAGCGGTGGCACCGGCGT 1053
Query 25318 GTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTCGGC-TCCG 25376
|||||||||||||||| | | ||| ||||| || ||| |||| | | |
Sbjct 1054 GTAGTCGTAATCGATGCGCAGCGCGCCATCGGCGAGCGTGGTGGCGCTGTTGACCATGCC 1113
Query 25377 GATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG-CGACCT--GCTGCCGAAACC 25433
| ||| ||| ||| | | |||||| |||||| || |||| | | | || |||
Sbjct 1114 G-TCGTACCAGGCGTTGGCATCGATCAAGTAGCC---CGACGACTTCAGGTCGCGGAACT 1169
Query 25434 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 25493
| ||||||| |||| | | || | | ||||| || | || ||| |||||||
Sbjct 1170 TGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGGGTGCATCGGTTTGTCGACGT 1229
Query 25494 CGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 25553
| | | |||||||||| | ||| | | ||| |||||||||||| |||
Sbjct 1230 AGAACGCCACGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCT 1289
Query 25554 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGC 25613
|||| |||||| | || |||| |||||||||| |||||||| || |||||||
Sbjct 1290 CGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGA 1349
Query 25614 GGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCT 25673
|||| ||||| || | ||| |||||| ||| ||| |||||||| ||||| ||||
Sbjct 1350 ACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGATCCT 1409
Query 25674 GCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAA 25733
||| |||||| ||| || | |||||||| ||||| |||| || || || |
Sbjct 1410 GCAGATCCCAATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACA 1469
Query 25734 TCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCG 25780
||||||||||||| ||| |||||||||| || |||| ||||
Sbjct 1470 GGCTCTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCG 1516
Score = 104 bits (114), Expect = 6e-18
Identities = 240/353 (68%), Gaps = 9/353 (3%)
Strand=Plus/Plus
Query 24227 TTCGGCCAGGGAGAAGGCGGCCATATCGCGCGGCGTCCAGCCAAACACCGTCGCGATATC 24286
|||| ||| || || || |||| || ||||| |||| || | | |||||| ||
Sbjct 2 TTCGTGCAGCGACCAGCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTC 61
Query 24287 GGCCATCGCGTCTTCTACGCGGGCCGGGATTCCATGCTCGCTTTCAGCGCCTTCGGCATC 24346
||||||||| || ||||||| | | || | ||| ||| | | | | ||||||||||
Sbjct 62 GGCCATCGCATCCTCTACGCAGTCGGGAAATCC--GCTTCCCT-CTGGGCCTTCGGCAAG 118
Query 24347 AAAAAA-CCGGCGAAGATACCCCCCAAC-GCCACGAGGTCGGCCGGGTCCATGCCGGCCA 24404
|||||| || || | | | || || |||| ||||||||||| ||||| | |
Sbjct 119 AAAAAAACCTGC--ACCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGA 176
Query 24405 CGTCGAACTCGGTCAGCGTCGGCGTGCTGATGCGCGGCAACA-CCTTGCGCAGCGCGTCG 24463
||||| ||||||||| |||| | ||||| |||| || |||| ||||||| |
Sbjct 177 CGTCGGCGGTGGTCAGCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGC-CAGCGCGGTG 235
Query 24464 ACATCGAGATTCACGAGTGCGGCGAGCGACGTGCCGCGCAGCGCGCCCGCGGCTGGCTTG 24523
||||| || | || | ||| |||| ||||||||| |||| ||| | ||||||
Sbjct 236 ACATCCAGCTGCAGCACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTG 295
Query 24524 CGCAACGTCACCTGCGTAATGGTCTGCCCTTCGCGCTCGATCGGTGTGTCGAG 24576
|| | | | | | || ||||||||| | ||||| ||| || ||||||
Sbjct 296 CGGACCTTGAGGTCGGTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAG 348
>seq6336
Length=1727
Score = 226 bits (250), Expect = 7e-55
Identities = 274/364 (75%), Gaps = 12/364 (3%)
Strand=Plus/Plus
Query 3427 CCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATA 3486
||| || || || || |||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420
Query 3487 CTTTTGGGT-TCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACA 3545
||| ||| | || |||| ||| |||||||||||||| |||||||||||||||||
Sbjct 1421 CTTCTGGACCTACGG-GTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACA 1479
Query 3546 AGCGCTGGCGCAAGACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGT 3605
|| ||||||||||| ||||||||||| || || ||| | | |||||||| ||| |||
Sbjct 1480 AGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGT 1539
Query 3606 TCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG-AGCGCATCCAGATCGA- 3663
| |||| ||||| || | || | | || | |||| |||| |||| |||||||||||
Sbjct 1540 TTTGGACCGGCGAGCGC-CGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGAT 1598
Query 3664 --CACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGA-CGCGCAGTGGCGGCA 3720
| || ||||| ||||| | |||| ||| |||| ||||| ||||||||
Sbjct 1599 GTCTCG---CACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGC-CTGGCGGCA 1654
Query 3721 GATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCT 3780
|||||| | | | ||||| || | | ||||||||||||||||| |||||||||||
Sbjct 1655 GATCGTCAACATCCTCGACGCCCAGCGCCGTGGCTGCGACCTGTTCGATATCGACGAGCT 1714
Query 3781 GCGC 3784
||||
Sbjct 1715 GCGC 1718
Score = 125 bits (138), Expect = 2e-24
Identities = 299/446 (67%), Gaps = 22/446 (5%)
Strand=Plus/Plus
Query 2890 CGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGAGAA 2949
||| |||||||||| | | ||||||| |||| || | ||| |||| |||| | |
Sbjct 926 CGTTGAGCGCATCGGTGGCGCACTCGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGA 985
Query 2950 GAAGGACGGTGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 3009
||| ||| | || | ||||||||| || ||||| || || | ||||| | ||
Sbjct 986 AAAGTCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGC 1045
Query 3010 GCGCGT---GCGCAAGTACGACGAGACGGGG--AAGGAATCGGATCTGAACCCGAAGATT 3064
|||| | |||| ||| | || ||| | || ||| | |||||||| ||| |
Sbjct 1046 GCGCATCCAGCGC---TACCA--AGGCGGCGGCAACGAAGCCGATCTGAATCCGGCTGTC 1100
Query 3065 GCGTCGCGCAACGCCGGCCCGAA-----ACGCCGTGCGCCCCGTAACGAAATCAGCGACG 3119
|| |||||||| | || || | || |||| ||||| ||| || |
Sbjct 1101 GCCAATCGCAACGCTGCGCCAAAGAAAAAACCCAAGCGC-----AACGACTTCACTGAAG 1155
Query 3120 AACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTG-TTCGACTATCAGAAAGTC 3178
||||| | ||| | | | |||||| ||| |||| |||||||| ||| |
Sbjct 1156 AACAGGTCGAGCAGCTGACCACCGCGTTCGTCGACG-GCTGCTTCGACTACCAGCGCGAT 1214
Query 3179 TGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCG 3238
||||| ||| |||| | ||||||| |||| |||||| || ||||| |||||||||||
Sbjct 1215 TGGTACCGGGCCGGCAACGAGCGCACCCGCATCATCCTCAAGTCGCGCCAGATCGGTGCA 1274
Query 3239 ACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATC 3298
|||| |||||||| ||||| ||||| |||| || ||| ||||| || ||||| ||
Sbjct 1275 ACGTTTTACTTCGCTCGCGAAGCGCTGATCGATGCGCTCACCACCGGGCGCAATCAGATT 1334
Query 3299 TTCCTGTCGGCGAGCAAGGCTCAGGC 3324
||| || || |||||| |||||
Sbjct 1335 TTCTTGAGCGCCTCCAAGGCGCAGGC 1360
Score = 98.7 bits (108), Expect = 2e-16
Identities = 169/240 (70%), Gaps = 9/240 (4%)
Strand=Plus/Plus
Query 2169 GGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCGACGAGATACGCCTCGCCGAT 2228
|||||| ||||| ||||| |||||| |||| || |||||||||||||||| |||| |
Sbjct 209 GGTGCCCAGGCTGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGT 268
Query 2229 GTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGAAGAGCTTCTG---GCGCTTCTTCGA 2285
|| |||||| | | | |||||| ||| |||||||||| | ||| || ||
Sbjct 269 GTTGGCGAATTTCTCCTGCACCTCGATGCTGGTGTAGAGCTTCTGCTTGGACTTGTT-GA 327
Query 2286 CAGTGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGCGCCATCTTCCCTTTCAG 2345
|| || || ||| ||||||| |||||||| ||| ||||||||| | ||| |
Sbjct 328 TGGT--GATCAGGTCGGCGGTCGGCTCGATCTGGGCAAACAGCGCCA--GGCGCTTGGTG 383
Query 2346 CGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCACGTCGCCATACGCGCCGAACGG 2405
| | || |||| ||| | || |||| || | || ||||||||||| | ||||||
Sbjct 384 CCATCGATC-TCGACCTCTTCGGCTTTCACTGCAGTGACATCGCCATACGCACGGAACGG 442
>seq6999
Length=1567
Score = 114 bits (126), Expect = 3e-21
Identities = 506/778 (65%), Gaps = 30/778 (4%)
Strand=Plus/Plus
Query 19732 TTTCGAGCTCGAGCGCGGTCGTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTC- 19790
|||| |||| ||||| ||| ||||||| || | || || |||||| ||||| || |
Sbjct 487 TTTCAAGCTTGAGCGATGTCTTGAATCCGTCGCCCCCAATAGTGTGCAGTGTCT-CTCCG 545
Query 19791 ACGAGCCACGGCGTCTCGT--CGATTTCCGGTTTGAAGCCTGACACGGTCACGGGCATTT 19848
| ||||| |||| ||| |||| || || || || || | ||||| ||| |
Sbjct 546 ATAAGCCA--GCGTTGCGTATCGATCTCAGGCTTTAAACCGCTAAACGTCACCCGCAGCT 603
Query 19849 CCGGGAACAGTTCGGCGCGGCCGCGCGCGAGCGTGTAGCTC-ATCGTCGCCTGGCTGCGC 19907
| || || | || || |||||| | || | |||||| ||| | | ||||| || |||
Sbjct 604 CGGGAAAGACATCCGCCCGGCCGAGAGCCAACGTGTA-CTCGAACTTCGCCACGCCGCGT 662
Query 19908 TGCATCCGCTTGAACTCCGCTTGCGCG-GCAGCGCGCGCTTCCGCCTCCGTTGCGTAGTC 19966
| || ||||| | |||||| ||||| || | ||| || ||||| || ||
Sbjct 663 TTCACCCGCTCCAGCTCCGCATGCGCATGCTG-GCGTGCCGTTGCCTCATCGGCATACGA 721
Query 19967 TTCCGGCAGCACCTTCACGTTCTTGTTGTTCTCGCCGCCGACGATGACCGACTTCCGCTT 20026
|| |||| ||| |||| | || || |||||| | ||||||| ||||
Sbjct 722 CTCGCGCAGGCGCTTGGCGTTGTCGTCTTT------GCCGACCAGCACCGACTGCCGCCG 775
Query 20027 CGCGCGGCCG--GTCGAATGGTAGTGCGCGCGCACGGCCGCGTAGTTCTCGCGTTCGGAC 20084
|| ||| ||| | ||| |||||||||| | | |||| ||||| ||||
Sbjct 776 TGCCTTGCCTTTGTCCACCC--AGTACGCGCGCACGCCGGTGTAGGCATCGCGGTCGGCA 833
Query 20085 ACGTGGTAACGATGACTGTCGCCGCTCGCGC-GCGTCAGTTCGAGCACGTCG--AGCTGC 20141
||| |||||| || |||||| |||||| ||||||| || || |||| ||| |
Sbjct 834 ACGGAGTAACGGTGTTGGTCGCCT-TCGCGCCGCGTCAGGGTGA-CA-GTCGGCAGCGGT 890
Query 20142 TTTCCGCTCGCCGTCTGGCCGGTGCCGATCGGCATGAACAGCAAGCGTAGATCCTTCACG 20201
|| ||| |||| || ||||| |||||||||| |||| ||| | |||| ||
Sbjct 891 TTGCCGGTCGCTGTGGTGCCGGCGCCGATCGGCGCAAACACCAATGCTCCTGCCTTGACC 950
Query 20202 TTCATGACGGCGTCGTAGCGCTTCGCCAGACGCGTAAGAAACGACATGTCCGATTCGTGC 20261
| ||| || ||| |||||| |||| ||||| || | ||| || ||||
Sbjct 951 GTGGCGACCGCATCGAAGCGCTGGCCCAGGCGCGTGAGCAGATTCATATCGCTCTCGTTG 1010
Query 20262 GTCTGGTCGATGTGCGCGATCAGGATCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAGC 20321
| |||||||| || | | | | || ||||| || | ||| ||| | |||
Sbjct 1011 GCCTGGTCGAGATGGGGCAACTTAGTGCGTGCCAGCGCCTCCGCCACGCGCGGGGTCAGT 1070
Query 20322 GAGTAGCGC-CCGGCGATCGCGTGGACGATCGAGCCGATCGTC-TGCCGATGCCAGCTCT 20379
| || | ||||| | | | || | | ||| | ||| || | ||||||||
Sbjct 1071 CCAT-GCTCGCCGGCCAGGGTATTGAGCACGGCGCCCAACGTGGTGTTG-TGCCAGCTGC 1128
Query 20380 TCTCGCGGCGCTCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGATGA 20439
|||||| ||| ||||| | |||| | || |||||||| | ||||||||
Sbjct 1129 GCTCGCGCCGCGTGCGCATGTCTGCAGTCAGATCCGCACTACGCGCGCGCACGGTGATGA 1188
Query 20440 TGTCCGGCGCGCCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGAG 20497
|||| ||||||||||||| ||| || |||| ||| | |||| |||| |||||||| ||
Sbjct 1189 TGTCGGGCGCGCCGCTGTACTCCACCTCGTCCACGATGAAGGTGCCTTTGTCGACCAG 1246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 120305931063932
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