Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_007809.1 Length=59446 Score E Sequences producing significant alignments: (Bits) Value seq4113 107 7e-19 seq3194 86.0 2e-12 >seq4113 Length=2865 Score = 107 bits (118), Expect = 7e-19 Identities = 132/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 35611 CTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATC 35670 |||||||| | ||||||| |||| || | || ||||| || | | | ||| Sbjct 223 CTGTGGGATGTGATCATGTCTTCCACCTACGACTTTGCCGAGCCAGGGTTTATCCTGATC 164 Query 35671 GAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAACCC 35729 ||| ||| ||||| ||||||||| ||||| |||||| | |||| |||||| ||||| Sbjct 163 GACCGCG-TCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAACCC 105 Query 35730 CTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCTG 35787 || ||||||||||| || || || ||||| |||||| || |||| ||| |||||||| Sbjct 104 GTGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCTG 47 >seq3194 Length=4057 Score = 86.0 bits (94), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 35686 ATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAACCCCTGCGGTGAGCAACCG 35745 ||||||||| ||||| ||| || | |||| ||| || ||||||||||| |||||||| Sbjct 1 ATGAACAACAACTGGTTCTGTGAAAACATCCGCGCTACCAACCCCTGCGGCGAGCAACCA 60 Query 35746 CTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCTG 35787 | ||||| ||||| || ||| || ||||||| | |||||| Sbjct 61 TTGCCGCCATACGGCGCGTGCCTGCTGGGCTCAGTTAACCTG 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190078315806656