Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq732 134 1e-26
seq151 123 2e-23
seq75 118 1e-21
seq373 93.3 4e-14
>seq732
Length=22061
Score = 134 bits (148), Expect = 1e-26
Identities = 351/521 (67%), Gaps = 21/521 (4%)
Strand=Plus/Minus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC--AGCAGCACCG 46141
|| ||||| || || |||||| || | |||||| | |||||| | || | || | |
Sbjct 9186 ATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCT 9127
Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201
| | ||| ||||| || |||| ||||| || || ||| | || || || |||
Sbjct 9126 T--CGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCT 9069
Query 46202 -GTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259
||| ||| | ||||||| | || || | || | ||||||| ||||| | ||
Sbjct 9068 CGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGGTC-TCATGCCTGGCCTCAGCTTCTC 9011
Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAA 46319
|||||||| || || || |||||| |||| |||||||||||||| ||| ||
Sbjct 9010 GAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTC 8951
Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGAC-ACCGTGCTGAGCATGTTCAAG---GAGG 46375
|| | ||| || ||||| |||||| |||| | | || | ||| || |
Sbjct 8950 CAAGCTAGTGAAC---AAGCT---GCCCGAGGACCGCGTCCA-CACGATCATTCGCGACG 8898
Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435
| ||| | || ||| | |||||| | || | | ||||||| || ||| | |||||||
Sbjct 8897 CAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGA 8838
Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGC-AGCTT 46494
|| | | |||||| | ||||| ||||||||||||||||| ||| | || | |||
Sbjct 8837 ACTCGGCGCTCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTG-TTGTACTCGCTC 8779
Query 46495 CACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554
| | ||||| ||| || || || |||||||| | ||| ||| ||||| ||
Sbjct 8778 GGCGTGTCGAAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTT 8719
Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
||||||| || || |||||||| ||||| || ||||||||
Sbjct 8718 CAGGGCAAGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTA 8678
>seq151
Length=51439
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||||| || ||||| | || | ||||||||||| || |||||||| |||||
Sbjct 38273 GCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 38332
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| ||| || ||||||||||| || |||| | ||||||||||| || ||
Sbjct 38333 CAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38392
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| |||||||| | | || | | || | | ||| |
Sbjct 38393 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCAC 38452
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
||| | || | || || || || | || || ||||||||||||||
Sbjct 38453 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38500
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||||| || ||||| | || | ||||||||||| || |||||||| || ||
Sbjct 38045 GCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 38104
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| || || ||| || ||||||||||| || |||| | ||||||||||| || ||
Sbjct 38105 CAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38164
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| |||||||| | | || | | || | | ||| |
Sbjct 38165 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCAC 38224
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
||| | |||| || || || || | || || |||||||||||||||
Sbjct 38225 GTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATG 38273
>seq75
Length=61118
Score = 118 bits (130), Expect = 1e-21
Identities = 723/1138 (64%), Gaps = 40/1138 (4%)
Strand=Plus/Plus
Query 145034 ATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGC 145093
||||| || | || | ||||| || || | | ||||||||| |||| ||| || ||
Sbjct 20772 ATCAATTCCTTCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGG 20831
Query 145094 AAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTC 145153
|||| || |||||| | || |||| |||||||| |||||||| || || || |||
Sbjct 20832 TTGTACATATTCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTC 20891
Query 145154 GTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCT 145213
| || || ||||| |||||| | | || ||||| | ||| | ||| | | ||
Sbjct 20892 GAAGCCGTCGGCATTGGCGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTC 20951
Query 145214 TCCTTTAGCGTACCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTAC 145270
||||| | | ||| ||||| || || | |||| | ||| ||||||||||| ||
Sbjct 20952 TCCTTCAACTCCGTCCAGTCCCAAAGACCTGACGACGGCGTGACGCCCCACATGTCGAAC 21011
Query 145271 TGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTT 145329
|| || || |||| ||| || || ||| || || | || || | ||||| | ||
Sbjct 21012 TGGAAGATCCCCTTGCTCGCTGGAGAGCCCTGGAACG-TCTCGTACGGACCCAATTCCTT 21070
Query 145330 GGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGT 145388
||| | ||| || | || || || | || | || || |||||| || | | | |
Sbjct 21071 GGCAATCTC-CATCGACGTCTTCATCGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTAT 21129
Query 145389 TGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGA 145448
| ||| | ||||| ||||| || ||| | || || | ||| ||||| ||||
Sbjct 21130 TCAGCTCCCGCGCTTGCTCGCTTTCAAACGCGTAGTTCATGAGAATAAACGCATCCGCGA 21189
Query 145449 GCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGA 145508
| ||||| | || | ||||| || || || ||||||| | | | || | |
Sbjct 21190 GACCCTGGACACCAATGCCGACTGGACGGTGGCGCATGTTGGACGTGCGAGCTTCTGCAA 21249
Query 145509 TAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGT 145568
|| || ||| || || | || |||| ||| ||| || || | || | ||
Sbjct 21250 CGGGGTAGTAATTCACCTCAATCACCTTGTTCAGGTTACGCGTCACGACGCTGGTCACGT 21309
Query 145569 GCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACC--ACACAGCTATTGACGGC 145626
|| ||| | | | |||| | || ||||| | | |||| ||
Sbjct 21310 CGTACAGCTTCTTGTAATTAAACACGCCGTCTTCAACAAACTTGGGCAGC--------GC 21361
Query 145627 GATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGG 145685
| ||||||||||||||| || ||| || | ||||| || || | | | | ||
Sbjct 21362 TACCGACGCCAAATTACACACCGCCACTTCATCCGGCGACG-TGAACTCCATCACTTCAC 21420
Query 145686 CGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC- 145744
|||||| || || | ||| || || || || ||||| || ||| | ||| |||
Sbjct 21421 AGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCTGGTTCGATTTGCGGTT-CACT 21479
Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAAC 145802
|| ||||| |||||||| | || | || || || | ||||| |||| ||| ||||
Sbjct 21480 GCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCTGCGCATCCAAGATCGCAAAC 21539
Query 145803 GGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCT 145860
|| | ||| ||| | | || | || ||||||| |||||| |||| |
Sbjct 21540 --CACAGCTGCTGGGCATTGATCGTCTTCCTCGCCCGTCCCTCTTGTTCGTACTTTTCAT 21597
Query 145861 GTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACA 145920
| || ||||||| || || || | ||| |||| || ||| | || |||||
Sbjct 21598 ACAAAG--TCTCAAACTCGTCGCCCCAGTACTCGTACAGCCCTGGAGCTTCATTTGGACA 21655
Query 145921 CATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAG 145980
| || ||| || || || | || || | ||| || | ||| || |||||||
Sbjct 21656 GAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGAATAGATCGGGTACCCACAA 21715
Query 145981 CGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATG-TTTCGCTTCAAATT 146037
||| | | ||||| ||||| | || | | ||| ||||| ||| | |||||
Sbjct 21716 CGCAAAGAACAAGTCCCGCGCCCGATGGAGT--TCA-TTGCCATGATTTTTCCGCAAATC 21772
Query 146038 AAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTC 146096
|| | ||| | | | ||| |||||||||||||| | |||| || | | |||||| |
Sbjct 21773 GAG-AAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCCTTTGC 21831
Query 146097 GTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151
|||| |||||| || ||||||| ||| || ||| ||||| ||||| | ||||||
Sbjct 21832 GTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCATGGG 21889
>seq373
Length=42858
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/130 (76%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 131007 GCCACCGC---GCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063
|||||||| ||| ||| ||||| | || | ||||||||||| || |||||||| ||
Sbjct 34197 GCCACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 34256
Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123
|| || || ||||||||||||||||| ||| |||| | |||||||||||| ||
Sbjct 34257 CGACAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGG 34316
Query 131124 AGGGATTCCT 131133
|| ||||||
Sbjct 34317 CGGAATTCCT 34326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471941490666240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |