Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq732 134 1e-26 seq151 123 2e-23 seq75 118 1e-21 seq373 93.3 4e-14 >seq732 Length=22061 Score = 134 bits (148), Expect = 1e-26 Identities = 351/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC--AGCAGCACCG 46141 || ||||| || || |||||| || | |||||| | |||||| | || | || | | Sbjct 9186 ATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCT 9127 Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 | | ||| ||||| || |||| ||||| || || ||| | || || || ||| Sbjct 9126 T--CGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCT 9069 Query 46202 -GTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| ||| | ||||||| | || || | || | ||||||| ||||| | || Sbjct 9068 CGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGGTC-TCATGCCTGGCCTCAGCTTCTC 9011 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAA 46319 |||||||| || || || |||||| |||| |||||||||||||| ||| || Sbjct 9010 GAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTC 8951 Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGAC-ACCGTGCTGAGCATGTTCAAG---GAGG 46375 || | ||| || ||||| |||||| |||| | | || | ||| || | Sbjct 8950 CAAGCTAGTGAAC---AAGCT---GCCCGAGGACCGCGTCCA-CACGATCATTCGCGACG 8898 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | ||| | || ||| | |||||| | || | | ||||||| || ||| | ||||||| Sbjct 8897 CAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGA 8838 Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGC-AGCTT 46494 || | | |||||| | ||||| ||||||||||||||||| ||| | || | ||| Sbjct 8837 ACTCGGCGCTCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTG-TTGTACTCGCTC 8779 Query 46495 CACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554 | | ||||| ||| || || || |||||||| | ||| ||| ||||| || Sbjct 8778 GGCGTGTCGAAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTT 8719 Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||||| || || |||||||| ||||| || |||||||| Sbjct 8718 CAGGGCAAGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTA 8678 >seq151 Length=51439 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | ||||||||||| || |||||||| ||||| Sbjct 38273 GCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 38332 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||| || ||||||||||| || |||| | ||||||||||| || || Sbjct 38333 CAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38392 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| |||||||| | | || | | || | | ||| | Sbjct 38393 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCAC 38452 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || | || || |||||||||||||| Sbjct 38453 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38500 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | ||||||||||| || |||||||| || || Sbjct 38045 GCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 38104 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || ||||||||||| || |||| | ||||||||||| || || Sbjct 38105 CAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38164 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| |||||||| | | || | | || | | ||| | Sbjct 38165 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCAC 38224 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | |||| || || || || | || || ||||||||||||||| Sbjct 38225 GTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATG 38273 >seq75 Length=61118 Score = 118 bits (130), Expect = 1e-21 Identities = 723/1138 (64%), Gaps = 40/1138 (4%) Strand=Plus/Plus Query 145034 ATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGC 145093 ||||| || | || | ||||| || || | | ||||||||| |||| ||| || || Sbjct 20772 ATCAATTCCTTCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGG 20831 Query 145094 AAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTC 145153 |||| || |||||| | || |||| |||||||| |||||||| || || || ||| Sbjct 20832 TTGTACATATTCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTC 20891 Query 145154 GTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCT 145213 | || || ||||| |||||| | | || ||||| | ||| | ||| | | || Sbjct 20892 GAAGCCGTCGGCATTGGCGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTC 20951 Query 145214 TCCTTTAGCGTACCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTAC 145270 ||||| | | ||| ||||| || || | |||| | ||| ||||||||||| || Sbjct 20952 TCCTTCAACTCCGTCCAGTCCCAAAGACCTGACGACGGCGTGACGCCCCACATGTCGAAC 21011 Query 145271 TGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTT 145329 || || || |||| ||| || || ||| || || | || || | ||||| | || Sbjct 21012 TGGAAGATCCCCTTGCTCGCTGGAGAGCCCTGGAACG-TCTCGTACGGACCCAATTCCTT 21070 Query 145330 GGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGT 145388 ||| | ||| || | || || || | || | || || |||||| || | | | | Sbjct 21071 GGCAATCTC-CATCGACGTCTTCATCGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTAT 21129 Query 145389 TGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGA 145448 | ||| | ||||| ||||| || ||| | || || | ||| ||||| |||| Sbjct 21130 TCAGCTCCCGCGCTTGCTCGCTTTCAAACGCGTAGTTCATGAGAATAAACGCATCCGCGA 21189 Query 145449 GCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGA 145508 | ||||| | || | ||||| || || || ||||||| | | | || | | Sbjct 21190 GACCCTGGACACCAATGCCGACTGGACGGTGGCGCATGTTGGACGTGCGAGCTTCTGCAA 21249 Query 145509 TAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGT 145568 || || ||| || || | || |||| ||| ||| || || | || | || Sbjct 21250 CGGGGTAGTAATTCACCTCAATCACCTTGTTCAGGTTACGCGTCACGACGCTGGTCACGT 21309 Query 145569 GCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACC--ACACAGCTATTGACGGC 145626 || ||| | | | |||| | || ||||| | | |||| || Sbjct 21310 CGTACAGCTTCTTGTAATTAAACACGCCGTCTTCAACAAACTTGGGCAGC--------GC 21361 Query 145627 GATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGG 145685 | ||||||||||||||| || ||| || | ||||| || || | | | | || Sbjct 21362 TACCGACGCCAAATTACACACCGCCACTTCATCCGGCGACG-TGAACTCCATCACTTCAC 21420 Query 145686 CGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC- 145744 |||||| || || | ||| || || || || ||||| || ||| | ||| ||| Sbjct 21421 AGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCTGGTTCGATTTGCGGTT-CACT 21479 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAAC 145802 || ||||| |||||||| | || | || || || | ||||| |||| ||| |||| Sbjct 21480 GCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCTGCGCATCCAAGATCGCAAAC 21539 Query 145803 GGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCT 145860 || | ||| ||| | | || | || ||||||| |||||| |||| | Sbjct 21540 --CACAGCTGCTGGGCATTGATCGTCTTCCTCGCCCGTCCCTCTTGTTCGTACTTTTCAT 21597 Query 145861 GTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACA 145920 | || ||||||| || || || | ||| |||| || ||| | || ||||| Sbjct 21598 ACAAAG--TCTCAAACTCGTCGCCCCAGTACTCGTACAGCCCTGGAGCTTCATTTGGACA 21655 Query 145921 CATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAG 145980 | || ||| || || || | || || | ||| || | ||| || ||||||| Sbjct 21656 GAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGAATAGATCGGGTACCCACAA 21715 Query 145981 CGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATG-TTTCGCTTCAAATT 146037 ||| | | ||||| ||||| | || | | ||| ||||| ||| | ||||| Sbjct 21716 CGCAAAGAACAAGTCCCGCGCCCGATGGAGT--TCA-TTGCCATGATTTTTCCGCAAATC 21772 Query 146038 AAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTC 146096 || | ||| | | | ||| |||||||||||||| | |||| || | | |||||| | Sbjct 21773 GAG-AAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCCTTTGC 21831 Query 146097 GTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||| |||||| || ||||||| ||| || ||| ||||| ||||| | |||||| Sbjct 21832 GTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCATGGG 21889 >seq373 Length=42858 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 131007 GCCACCGC---GCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 |||||||| ||| ||| ||||| | || | ||||||||||| || |||||||| || Sbjct 34197 GCCACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 34256 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || || || ||||||||||||||||| ||| |||| | |||||||||||| || Sbjct 34257 CGACAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGG 34316 Query 131124 AGGGATTCCT 131133 || |||||| Sbjct 34317 CGGAATTCCT 34326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471941490666240