Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3567 140 2e-28
seq5921 131 1e-25
seq2766 131 1e-25
seq9 122 6e-23
seq4520 113 3e-20
seq1297 113 3e-20
seq8368 91.5 1e-13
>seq3567
Length=8923
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3930 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3871
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 3870 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3836
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |
Sbjct 1809 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTTTCTC 1750
Query 20007 GGTAATATTTAGCCTT 20022
| | |||||||| ||
Sbjct 1749 GTCAGTATTTAGCTTT 1734
>seq5921
Length=1845
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1689 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1748
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||| ||||||||| |||||
Sbjct 1749 TAATCCATTCATGCGCGTCCCTAATTAGAGGACGA 1783
>seq2766
Length=8717
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 1931 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1990
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1991 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2025
Score = 93.3 bits (102), Expect = 3e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| |
Sbjct 3923 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3982
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 3983 GCCCGTATTTAGCCTT 3998
>seq9
Length=96720
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||| ||||||||| ||||||||||| || |||||| |
Sbjct 456 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 515
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||| |||||||||||
Sbjct 516 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 550
>seq4520
Length=2528
Score = 113 bits (124), Expect = 3e-20
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2276 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 2335
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||| |||
Sbjct 2336 ACCAATATTTAGCTTTA 2352
>seq1297
Length=21369
Score = 113 bits (124), Expect = 3e-20
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1863 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 1804
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||| |||
Sbjct 1803 ACCAATATTTAGCTTTA 1787
>seq8368
Length=1322
Score = 91.5 bits (100), Expect = 1e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008
|||| |||||||||||||||| |||||| |||| ||||||||||||||||||| || |
Sbjct 1140 CTCTTTTCAAAGTTCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGTTTCCCAT 1081
Query 20009 TAATATTTAGCCTTA 20023
|||||||||||||
Sbjct 1080 AGATATTTAGCCTTA 1066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334897862905466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |