Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3567 140 2e-28 seq5921 131 1e-25 seq2766 131 1e-25 seq9 122 6e-23 seq4520 113 3e-20 seq1297 113 3e-20 seq8368 91.5 1e-13 >seq3567 Length=8923 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3930 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3871 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3870 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3836 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || | Sbjct 1809 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTTTCTC 1750 Query 20007 GGTAATATTTAGCCTT 20022 | | |||||||| || Sbjct 1749 GTCAGTATTTAGCTTT 1734 >seq5921 Length=1845 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1689 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1748 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| ||||||||| ||||| Sbjct 1749 TAATCCATTCATGCGCGTCCCTAATTAGAGGACGA 1783 >seq2766 Length=8717 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1931 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1990 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1991 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 3923 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3982 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3983 GCCCGTATTTAGCCTT 3998 >seq9 Length=96720 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 456 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 515 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 516 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 550 >seq4520 Length=2528 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2276 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 2335 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 2336 ACCAATATTTAGCTTTA 2352 >seq1297 Length=21369 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1863 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 1804 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 1803 ACCAATATTTAGCTTTA 1787 >seq8368 Length=1322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||| |||| ||||||||||||||||||| || | Sbjct 1140 CTCTTTTCAAAGTTCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGTTTCCCAT 1081 Query 20009 TAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 1080 AGATATTTAGCCTTA 1066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334897862905466