Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_008194.1
Length=74483
Score E
Sequences producing significant alignments: (Bits) Value
seq7712 212 3e-50
seq2623 158 6e-34
seq304 104 1e-17
seq9695 82.4 4e-11
>seq7712
Length=1425
Score = 212 bits (234), Expect = 3e-50
Identities = 449/663 (68%), Gaps = 23/663 (3%)
Strand=Plus/Plus
Query 65397 TCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGG 65456
||||||| ||||| || | ||||| ||| ||||| ||||| || |||| ||
Sbjct 724 TCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTGCCGAAGG 783
Query 65457 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACG 65516
|||| || |||||||||||||| || ||||| || || ||| | || | || || |
Sbjct 784 GCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGG 843
Query 65517 CGGTGGC-CAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCC 65575
| | || || ||| ||||| ||||||| ||| || | ||||||||| ||||| |
Sbjct 844 CCATTGCGCAGTGC-CAGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGAGCATGCG 902
Query 65576 CTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 65633
|| ||||| ||||| ||| ||| || || | ||||| | || || | |
Sbjct 903 CTCGACCCGATCTACGCG--GGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCTATCGC 960
Query 65634 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 65693
|||||||||| || |||||||| ||||| |||| ||| | || || || ||||
Sbjct 961 AGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTC----GAGC 1016
Query 65694 T--GTCCAT--CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 65749
| ||| || ||| || | ||||| ||||| || ||| ||| || || |||||
Sbjct 1017 TCGGTCGATATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAATCGAA 1076
Query 65750 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65809
||||| || || ||| | || ||||| || || || ||| || || |||||
Sbjct 1077 GGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCTGCGC 1136
Query 65810 AAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 65869
||||| || || | |||| | ||||||| || | ||| ||||||||||||||
Sbjct 1137 AAGCTGACCGGTAACATCAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAGTTGCGC 1196
Query 65870 GAGAAGATCGGCAACGTG------GGCTACGGCCCGAACGAGACCACCACGGGCGGCAAG 65923
| ||||||||| | || || | ||||| | | ||||||| ||||| ||
Sbjct 1197 CACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTGACCACC---GGCGGTAAC 1253
Query 65924 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 65983
|| |||| ||||||||||| || || |||| ||||||| |||| | | ||| ||
Sbjct 1254 GCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATCAAGAAA 1313
Query 65984 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66043
|| || ||| ||||||||| || | | ||||| |||||||||||| |||| ||
Sbjct 1314 GGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCT 1373
Query 66044 CCG 66046
|||
Sbjct 1374 CCG 1376
>seq2623
Length=5434
Score = 158 bits (174), Expect = 6e-34
Identities = 237/335 (71%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 65633 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65692
||||| ||||||||||| ||||| ||||| |||| ||| | || || || ||
Sbjct 339 CAGCCAGACACTGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTTCAGGTTCT 280
Query 65693 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 65752
|| || || || ||||||||||| || || ||| ||||| || ||| | ||||||
Sbjct 279 GTGGATATTGTGGTGGTTGACTCTGTCGCCGCGCTGACTCCGCGTGCAGAGATTGAAGGC 220
Query 65753 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 65812
|| || || ||||| || | |||||||| |||||||| |||||||||||| |||| ||
Sbjct 219 GAAATGGGCGACAGCCATATGGGCCTGCAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAA 160
Query 65813 CTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65872
|| ||||| | |||| | ||||| || ||| | ||| | |||||| | || |
Sbjct 159 CTGACTGGTAACATCAAGCGTACCAATACACTGGTGATCTTCATTAACCAGATCCGTATG 100
Query 65873 AAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 65929
|| |||||| | || | ||| |||| || || || || |||||||| || |
Sbjct 99 AAAATCGGCGTCATG---TTCGGTAACCCG---GAAACAACGACCGGCGGCAACGCGCTT 46
Query 65930 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 65964
| ||||||||||| || ||| ||||| |||| ||
Sbjct 45 AAATTCTACGCCTCTGTGCGCCTGGATATCCGCCG 11
>seq304
Length=36179
Score = 104 bits (114), Expect = 1e-17
Identities = 189/273 (69%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 65552 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65611
|||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| |||
Sbjct 15169 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 15228
Query 65612 CTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 65669
| | | ||| | || | ||||| ||| |||| || | || |||||||||| ||
Sbjct 15229 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 15286
Query 65670 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCT 65727
|| || ||| ||| | |||| ||| | | ||||| | ||| ||| || |||||
Sbjct 15287 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 15344
Query 65728 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 65787
||||| || || ||||| ||||| || || || ||| || | | ||||| || ||
Sbjct 15345 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 15404
Query 65788 CCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 65820
||| ||| || || |||||||||| |||||
Sbjct 15405 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 15437
>seq9695
Length=1156
Score = 82.4 bits (90), Expect = 4e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 65632 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC-TGGCG 65690
|||||||||| |||| |||||||| || ||||| || || || || | || ||| |
Sbjct 670 TCAGCCGGACTCTGGAGAGCAGGCACTTGAGATTGTAGAGACGCTGGT-ACGTAGTGGGG 612
Query 65691 AGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 65750
|| | | || || || ||| ||||||||| || ||||| || ||||||||||
Sbjct 611 CAGTGGACTTTGTAGTAGTAGACAGTGTGGCGGCTCTTACTCCGCGAGCAGAGCTCGAAG 552
Query 65751 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 65810
| || || || ||||||||| | || || || || || || ||| ||||| | || |
Sbjct 551 GTGAAATGGGTGACAGTCACATGGGACTTCAGGCTCGACTTATGAGTCAGGCTCTACGAA 492
Query 65811 AGCTCAC 65817
|||| ||
Sbjct 491 AGCTTAC 485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 238185710522824
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