Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq7712 212 3e-50 seq2623 158 6e-34 seq304 104 1e-17 seq9695 82.4 4e-11 >seq7712 Length=1425 Score = 212 bits (234), Expect = 3e-50 Identities = 449/663 (68%), Gaps = 23/663 (3%) Strand=Plus/Plus Query 65397 TCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGG 65456 ||||||| ||||| || | ||||| ||| ||||| ||||| || |||| || Sbjct 724 TCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTGCCGAAGG 783 Query 65457 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACG 65516 |||| || |||||||||||||| || ||||| || || ||| | || | || || | Sbjct 784 GCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGG 843 Query 65517 CGGTGGC-CAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCC 65575 | | || || ||| ||||| ||||||| ||| || | ||||||||| ||||| | Sbjct 844 CCATTGCGCAGTGC-CAGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGAGCATGCG 902 Query 65576 CTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 65633 || ||||| ||||| ||| ||| || || | ||||| | || || | | Sbjct 903 CTCGACCCGATCTACGCG--GGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCTATCGC 960 Query 65634 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 65693 |||||||||| || |||||||| ||||| |||| ||| | || || || |||| Sbjct 961 AGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTC----GAGC 1016 Query 65694 T--GTCCAT--CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 65749 | ||| || ||| || | ||||| ||||| || ||| ||| || || ||||| Sbjct 1017 TCGGTCGATATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAATCGAA 1076 Query 65750 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65809 ||||| || || ||| | || ||||| || || || ||| || || ||||| Sbjct 1077 GGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCTGCGC 1136 Query 65810 AAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 65869 ||||| || || | |||| | ||||||| || | ||| |||||||||||||| Sbjct 1137 AAGCTGACCGGTAACATCAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAGTTGCGC 1196 Query 65870 GAGAAGATCGGCAACGTG------GGCTACGGCCCGAACGAGACCACCACGGGCGGCAAG 65923 | ||||||||| | || || | ||||| | | ||||||| ||||| || Sbjct 1197 CACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTGACCACC---GGCGGTAAC 1253 Query 65924 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 65983 || |||| ||||||||||| || || |||| ||||||| |||| | | ||| || Sbjct 1254 GCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATCAAGAAA 1313 Query 65984 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66043 || || ||| ||||||||| || | | ||||| |||||||||||| |||| || Sbjct 1314 GGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCT 1373 Query 66044 CCG 66046 ||| Sbjct 1374 CCG 1376 >seq2623 Length=5434 Score = 158 bits (174), Expect = 6e-34 Identities = 237/335 (71%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 65633 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65692 ||||| ||||||||||| ||||| ||||| |||| ||| | || || || || Sbjct 339 CAGCCAGACACTGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTTCAGGTTCT 280 Query 65693 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 65752 || || || || ||||||||||| || || ||| ||||| || ||| | |||||| Sbjct 279 GTGGATATTGTGGTGGTTGACTCTGTCGCCGCGCTGACTCCGCGTGCAGAGATTGAAGGC 220 Query 65753 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 65812 || || || ||||| || | |||||||| |||||||| |||||||||||| |||| || Sbjct 219 GAAATGGGCGACAGCCATATGGGCCTGCAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAA 160 Query 65813 CTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65872 || ||||| | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 159 CTGACTGGTAACATCAAGCGTACCAATACACTGGTGATCTTCATTAACCAGATCCGTATG 100 Query 65873 AAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 65929 || |||||| | || | ||| |||| || || || || |||||||| || | Sbjct 99 AAAATCGGCGTCATG---TTCGGTAACCCG---GAAACAACGACCGGCGGCAACGCGCTT 46 Query 65930 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 65964 | ||||||||||| || ||| ||||| |||| || Sbjct 45 AAATTCTACGCCTCTGTGCGCCTGGATATCCGCCG 11 >seq304 Length=36179 Score = 104 bits (114), Expect = 1e-17 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 65552 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65611 |||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| ||| Sbjct 15169 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 15228 Query 65612 CTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 65669 | | | ||| | || | ||||| ||| |||| || | || |||||||||| || Sbjct 15229 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 15286 Query 65670 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCT 65727 || || ||| ||| | |||| ||| | | ||||| | ||| ||| || ||||| Sbjct 15287 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 15344 Query 65728 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 65787 ||||| || || ||||| ||||| || || || ||| || | | ||||| || || Sbjct 15345 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 15404 Query 65788 CCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 65820 ||| ||| || || |||||||||| ||||| Sbjct 15405 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 15437 >seq9695 Length=1156 Score = 82.4 bits (90), Expect = 4e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 65632 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC-TGGCG 65690 |||||||||| |||| |||||||| || ||||| || || || || | || ||| | Sbjct 670 TCAGCCGGACTCTGGAGAGCAGGCACTTGAGATTGTAGAGACGCTGGT-ACGTAGTGGGG 612 Query 65691 AGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 65750 || | | || || || ||| ||||||||| || ||||| || |||||||||| Sbjct 611 CAGTGGACTTTGTAGTAGTAGACAGTGTGGCGGCTCTTACTCCGCGAGCAGAGCTCGAAG 552 Query 65751 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 65810 | || || || ||||||||| | || || || || || || ||| ||||| | || | Sbjct 551 GTGAAATGGGTGACAGTCACATGGGACTTCAGGCTCGACTTATGAGTCAGGCTCTACGAA 492 Query 65811 AGCTCAC 65817 |||| || Sbjct 491 AGCTTAC 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238185710522824