Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq151 122 8e-23 seq1324 107 2e-18 >seq151 Length=51439 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || | ||||| | || |||||| ||||| Sbjct 38500 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTCT 38441 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || ||||||| || ||| ||||| || || || || |||||||| Sbjct 38440 GACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38381 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||||||||| || | ||||| | ||||| || |||| ||||| Sbjct 38380 CAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 38321 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || | ||||| Sbjct 38320 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 38289 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || | || || | || |||||| ||||| Sbjct 38272 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATTACGCTGGACGTGGAGCCGTCT 38213 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || ||||||| || ||| ||||| || || || || |||||||| Sbjct 38212 GACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38153 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||||||||| || | ||||| | || || || | || ||||| Sbjct 38152 CAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTACAAC 38093 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || | ||||| Sbjct 38092 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 38061 >seq1324 Length=13147 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| ||||| || ||||| ||||| ||||| || || | ||||| | || |||||| Sbjct 2299 GGAATCATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAG 2240 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 |||| |||| || || ||||||| || || || || ||||| ||||| ||| Sbjct 2239 CCGTCCGACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCT 2180 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| ||||| | || ||||||||||| ||| | ||||| | |||||| | || Sbjct 2179 GACCAGCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGAC 2120 Query 25173 TACAATATTCAAAA 25186 ||||| || ||||| Sbjct 2119 TACAACATCCAAAA 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433264171598090