Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq7203 203 4e-47
>seq7203
Length=1522
Score = 203 bits (224), Expect = 4e-47
Identities = 573/870 (66%), Gaps = 44/870 (5%)
Strand=Plus/Plus
Query 92782 TTCTTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTC 92841
|||| | ||||||||| |||||||||||| || || |||||| |||||||| ||
Sbjct 653 TTCTGAGACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTT 712
Query 92842 TTTCCTTCCAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAATACTTT 92899
|| |||| || || ||| || || | || ||||| | || |||||| |||
Sbjct 713 TTGCCTTGTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAA--TTT 770
Query 92900 TCACCGATCAACTCGTA-------CAATAATCTATCAGCTACAAATTCTATGTACTGAGA 92952
| || ||||| || ||| | ||| || ||||| || ||||| || |
Sbjct 771 T-----ATTAACTCCTAATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCA 825
Query 92953 CATCAAATCACAATTCATTCCTAGAAGACGTA-CAGGTAGAGCGTCGGTCAAGAAATCTT 93011
||| | || |||||| || | | ||| | ||||||| || || || | ||| ||||
Sbjct 826 CATTAGTTCGGCATTCATGCCAATCA-ACGAAACAGGTAGCGCATCAGTTACGAATTCTT 884
Query 93012 TCTCGATTACAACGGCTTCTTTCA---------AGATTTCTATTACTCTACTATTTGGTG 93062
| |||||| | || || ||||||| |||||| | | | | || |||
Sbjct 885 TTTCGATTTCTACTGCATCTTTCACTAAATCGTAGATTT-TCTGAGGGTCATACTTG--- 940
Query 93063 GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTC 93122
|| || | | || | | || | || || |||||||| ||||| ||||| || |
Sbjct 941 --TTCTGAATGTAATTAGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCAC 998
Query 93123 GTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAA 93182
| || || |||||||| |||||| | ||| || | | || ||||| || | ||| |
Sbjct 999 GAGAAATTAACTCATTAGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGA 1058
Query 93183 ATATTGAAGCAAAACTA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATA 93241
|||| || ||| || | || || || || |||||||| || | |||||||| | |
Sbjct 1059 ATATCGA-GCAGAATGAGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGG 1117
Query 93242 CGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTC 93301
|| || ||| ||| || || | ||||| |||||||||||||||||||||
Sbjct 1118 CGGTCAATAAAGTTTCCGTTATCA------ATCCAACGCAAAGCCCAATCGGCTTTTTTC 1171
Query 93302 TTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT 93361
|| | ||| || | || || || |||| | | ||||||||| | | |||
Sbjct 1172 TTTACACACGGAATATGGTCTATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTG 1231
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|| || | ||| || | || || || |||| ||||| | || ||||| ||| |||
Sbjct 1232 ATATAAGAATCAATCAGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGG 1291
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAG 93480
|| || ||||||||| | ||||| | | || || | |||| ||| | || | |
Sbjct 1292 AAACCATAGAAACATTTTGCTTCGGCAAATTGTAC-ACGAGAGATAAAATTGACTGCCAA 1350
Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540
|||||||| || |||||||| || || |||||||| ||||||| ||| ||||||||
Sbjct 1351 GTTTTCATTAACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATG 1410
Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600
|||| |||| | || | ||||| || | ||| ||| || || | ||||||
Sbjct 1411 ACGCTCACCATCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTC 1470
Query 93601 GACAGTCCAAAACGATGCTTC-TGCTTTTT 93629
| | ||||| || || || || || |||||
Sbjct 1471 GGCTGTCCAGAATGAAGCCTCATGTTTTTT 1500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556776672254640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |