Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7203 203 4e-47 >seq7203 Length=1522 Score = 203 bits (224), Expect = 4e-47 Identities = 573/870 (66%), Gaps = 44/870 (5%) Strand=Plus/Plus Query 92782 TTCTTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTC 92841 |||| | ||||||||| |||||||||||| || || |||||| |||||||| || Sbjct 653 TTCTGAGACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTT 712 Query 92842 TTTCCTTCCAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAATACTTT 92899 || |||| || || ||| || || | || ||||| | || |||||| ||| Sbjct 713 TTGCCTTGTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAA--TTT 770 Query 92900 TCACCGATCAACTCGTA-------CAATAATCTATCAGCTACAAATTCTATGTACTGAGA 92952 | || ||||| || ||| | ||| || ||||| || ||||| || | Sbjct 771 T-----ATTAACTCCTAATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCA 825 Query 92953 CATCAAATCACAATTCATTCCTAGAAGACGTA-CAGGTAGAGCGTCGGTCAAGAAATCTT 93011 ||| | || |||||| || | | ||| | ||||||| || || || | ||| |||| Sbjct 826 CATTAGTTCGGCATTCATGCCAATCA-ACGAAACAGGTAGCGCATCAGTTACGAATTCTT 884 Query 93012 TCTCGATTACAACGGCTTCTTTCA---------AGATTTCTATTACTCTACTATTTGGTG 93062 | |||||| | || || ||||||| |||||| | | | | || ||| Sbjct 885 TTTCGATTTCTACTGCATCTTTCACTAAATCGTAGATTT-TCTGAGGGTCATACTTG--- 940 Query 93063 GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTC 93122 || || | | || | | || | || || |||||||| ||||| ||||| || | Sbjct 941 --TTCTGAATGTAATTAGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCAC 998 Query 93123 GTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAA 93182 | || || |||||||| |||||| | ||| || | | || ||||| || | ||| | Sbjct 999 GAGAAATTAACTCATTAGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGA 1058 Query 93183 ATATTGAAGCAAAACTA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATA 93241 |||| || ||| || | || || || || |||||||| || | |||||||| | | Sbjct 1059 ATATCGA-GCAGAATGAGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGG 1117 Query 93242 CGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTC 93301 || || ||| ||| || || | ||||| ||||||||||||||||||||| Sbjct 1118 CGGTCAATAAAGTTTCCGTTATCA------ATCCAACGCAAAGCCCAATCGGCTTTTTTC 1171 Query 93302 TTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT 93361 || | ||| || | || || || |||| | | ||||||||| | | ||| Sbjct 1172 TTTACACACGGAATATGGTCTATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTG 1231 Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || | ||| || | || || || |||| ||||| | || ||||| ||| ||| Sbjct 1232 ATATAAGAATCAATCAGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGG 1291 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAG 93480 || || ||||||||| | ||||| | | || || | |||| ||| | || | | Sbjct 1292 AAACCATAGAAACATTTTGCTTCGGCAAATTGTAC-ACGAGAGATAAAATTGACTGCCAA 1350 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 |||||||| || |||||||| || || |||||||| ||||||| ||| |||||||| Sbjct 1351 GTTTTCATTAACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATG 1410 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 |||| |||| | || | ||||| || | ||| ||| || || | |||||| Sbjct 1411 ACGCTCACCATCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTC 1470 Query 93601 GACAGTCCAAAACGATGCTTC-TGCTTTTT 93629 | | ||||| || || || || || ||||| Sbjct 1471 GGCTGTCCAGAATGAAGCCTCATGTTTTTT 1500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556776672254640