Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1324 105 6e-18 seq151 95.1 1e-14 >seq1324 Length=13147 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| || || ||||| | || Sbjct 2293 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2234 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || | || || || ||||| || ||||| || ||||| || || || Sbjct 2233 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2174 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| || | || || ||||| |||| || |||||| Sbjct 2173 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2114 Query 22399 ATTCAAAA 22406 || ||||| Sbjct 2113 ATCCAAAA 2106 >seq151 Length=51439 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || || || || || ||| |||| || || ||||| | Sbjct 38503 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38444 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| || | || || || || || ||||||||||| || || || || Sbjct 38443 TCTGACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGAC 38384 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||||||||| ||| | || || |||||| | ||| ||| Sbjct 38383 CAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTAC 38324 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 38323 AACATCCAGAAGGAGTCGAC 38304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419666174852590