Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq732 134 3e-26 seq91 122 2e-22 seq3 111 3e-19 seq7203 87.8 4e-12 >seq732 Length=22061 Score = 134 bits (148), Expect = 3e-26 Identities = 483/746 (65%), Gaps = 21/746 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| || ||||| | ||||| |||| || ||||| | Sbjct 8696 TCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATCCAGTCAAATGGGTTCTTT 8755 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 |||| | | ||| | ||| || | ||| || | |||||| || |||||||| | Sbjct 8756 GCATGGAAAATCTTCGACACGCCGAGCGAGTAC-AACAGGCGGTCCGCTACAAACTCAAT 8814 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT----ACGACAAGGAATTGCCTCAC 251737 ||||| | ||| || | |||||||||||||||| ||| || | | || ||| Sbjct 8815 GTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACGGGCAGCGAGTCCCGCAC 8874 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797 | || || | ||| | | ||||| || | || | | || | || | Sbjct 8875 A----AACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGGACGCGGTCCTCGG 8930 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCG 251856 |||||||||| | ||||| ||||||| ||| | ||| ||| | ||||| ||||| Sbjct 8931 GCAGCTTGTTCACTAGCTTGGAGTACATGAGGCACGC-AAAGTCCGTGTGCATGCCCTCA 8989 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||||| |||| |||||| || | | ||||||||||| | || || ||| | ||| Sbjct 8990 TCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGC 9049 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 || ||||| | ||| || || || ||||| | | || ||||| | | |||| | Sbjct 9050 CAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGC 9109 Query 251977 AGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031 || ||||| || ||| |||||| || | |||| | ||||| || | Sbjct 9110 AGCCGCTCCGCGTACGAAGATACTTGTGGGTCG--CACCACTTGAGCGCCCAATTGGCTT 9167 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATCG 252090 |||||| ||| ||||| || || || || | ||| | | ||| ||| | | Sbjct 9168 TCTTTCGAACACACGGGATGGTCTCAATCGC-GCGCAGAAGGTGATCCTTCTCCGTCGCC 9226 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC 252150 || | ||| || |||| || || || || | ||||| |||||| ||| | Sbjct 9227 TCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCG 9286 Query 252151 ATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTT 252210 |||||| | |||| || || || || | ||||| || |||||| | Sbjct 9287 ATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATG 9346 Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 || | ||||| |||| |||||||| ||| ||||||||||| | || | |||||| Sbjct 9347 GCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATA 9406 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTT 252296 ||||||||||||| ||| |||| || Sbjct 9407 AAGTGACGCTCATTGTCCGTGAGGTT 9432 >seq91 Length=60761 Score = 122 bits (134), Expect = 2e-22 Identities = 430/666 (65%), Gaps = 32/666 (5%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || || ||| ||||||| |||||||| || || ||||| | ||| || | ||| | | Sbjct 12628 GACCTCTGTAACTGTGAGTTCTCGCTTGCTTACGGTGGTATGATCTTGTTGAACAATGCT 12569 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || ||| | |||||||| |||| || ||||| ||||||||| || |||||| Sbjct 12568 CGTCTCCGTCTTAAGCGTGGTCACCGTTACGGTCTGTGCGGTCCCAACGGGTGTGGTAAG 12509 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTA-ACGCATCTGA 279529 || || |||||||||||| | |||||||||||||| |||||||| | ||| | || Sbjct 12508 TCGACGCTGATGCGCGCCATTTCGAACGGTCAGCTGGAGGGATTTCCAAGCCGCGAC-GA 12450 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589 | | | ||| |||| ||| |||||| || | | | || |||| ||||| | Sbjct 12449 GCTGAAGACTGTGTTTGTGGAGCACAACCTGCAGGCTTCGGAAGCGGAGCTGTCTGTGGT 12390 Query 279590 CGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATC----A 279645 || ||| | | || | | | | ||| || | | | |||| || | Sbjct 12389 TGAGTTCATCCTGGTGGATGAGGACCTCAAGGA---CACCCCGCGCAAGGAGGTCGAGGA 12333 Query 279646 TCCAGAAACTGGAGGCCAATGGTTTT----GATGA-AAGAATGCGTAATCTGCCAGTAGG 279700 | | |||| | ||| || ||||| | | | || || || || || Sbjct 12332 CACTCTATCTGGTG-----TGGGCTTCACAGATGAGATGCAGGCCCAAGCT----GTCGG 12282 Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGC 279760 |||| || || |||||||||||||| ||| || |||| || || || | | || Sbjct 12281 CACTCTTTCTGGCGGTTGGAAGATGAAATTGGAGCTGGCTCGTGCTATGCTGCGGAAGGC 12222 Query 279761 CGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| || | ||||| |||||||| || |||||| |||| || ||||| || ||||| Sbjct 12221 TGATATCTTGCTGCTCGATGAGCCGACGAACCACTTGGATGTCAAGAACGTGGCTTGGCT 12162 Query 279821 AGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGG 279880 | | || || || | |||| || || | || |||| || || ||||||||||| Sbjct 12161 GGAGAATTATCTCACTGGCCTGACTAACGTGACCTCGATCATGGTGTCGCACGACTCTGG 12102 Query 279881 CTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA---GCAAAATCTGAAGCTCTC 279937 ||||| || || ||| | ||| |||||||| || || || ||||| ||| Sbjct 12101 TTTCCTCGACAAGGTCTGCACGAACATTATTCACTACGAGACGCGTAAGTTGAAGATCTA 12042 Query 279938 CAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTA 279997 |||| ||||| ||||| ||||||| || || |||||| || ||||| Sbjct 12041 CAAG------GGCAATCTGTCCAAATTCGTGGAGCAGAAGCCAGAGGCGAAGGCGTACTA 11988 Query 279998 TGACCT 280003 || || Sbjct 11987 CGAGCT 11982 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 |||||||| ||||| |||||||| || | ||||| | || || || ||| || | Sbjct 11803 GGACCCAACGGTGCCGGTAAGTCGACATTGATCAAGATGCTTACCGGTGAGGTTGAGCCT 11744 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 ||| || | |||||||| || |||||| | |||||||| |||||||| ||| Sbjct 11743 ACTTCTGGCCAGATGTGGAAGCACCCTTCCATGCGTTTCGCTTACGTGGCTCAGCATGCT 11684 Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||||| ||| ||||| || |||| | ||||| ||||| |||||||| Sbjct 11683 TTCCACCACATTGAGTCGCACCTCGATGAGACTGCAAACCAGTACATCCAGTGGCG 11628 >seq3 Length=134081 Score = 111 bits (122), Expect = 3e-19 Identities = 267/399 (67%), Gaps = 14/399 (4%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || || | ||||| |||||||| |||| ||||| ||||| || || Sbjct 54169 AAGGTGGCGCAATTAGCAGGTTACGTATCCGAGCACTCTGCGTACCACCACGGCGAACAA 54110 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| |||||||| || || |||||||| || | ||| || || || ||||| || Sbjct 54109 AGTTTGCAGGGTTGTATCGTGAATATGGCACAAGATTTTGTTGGAAGCAATAACATTCAC 54050 Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTC 218834 | ||| || |||| ||||||||||||| | ||| | |||| || |||||| || Sbjct 54049 CTTCTG-TCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCGGCAAG 53991 Query 218835 TGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC---AGGC 218891 | | | || || || || || ||| || | || ||| || | | | ||| | Sbjct 53990 TTCTCGTTACATTTTCACCAATTTGGAGCAACTTACCCGCAAGATCTACGATCCTTTAGA 53931 Query 218892 CGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTA 218951 | ||||||||||| |||||| | || || || ||| ||||| ||||| |||||||| Sbjct 53930 CAATGATGTGCTC---AAGTATTTGGATGAAGACGGTCAATCGATCGAGCCGGAGTGGTA 53874 Query 218952 TGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAG---GGTT 219008 | || || || | ||||||| || || | | || || || |||| ||| Sbjct 53873 CATTCCGATCATCCCCATGGTGCTCGTCAACGGCACTGACGGCATTGGAACAGGTTGGTC 53814 Query 219009 CAGTACTGACATTCCTTCTTACAATCCCAAGGACATCAT 219047 |||| ||| |||| | ||||| || |||||||| Sbjct 53813 CAGTTCTG---TTCCGACGTACAACCCACTAGACATCAT 53778 >seq7203 Length=1522 Score = 87.8 bits (96), Expect = 4e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 251541 TTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTC 251600 ||| |||||| |||||| |||||||||||| | ||||| | | || || | || Sbjct 676 TTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATATC 735 Query 251601 CATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGAT 251660 |||||| ||||| || || || ||||| || || | || | || | | || | Sbjct 736 CATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAAAAG 795 Query 251661 GCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG 251720 | | || ||||||||||| | || || | ||| ||||| | ||||||||||||| ||| Sbjct 796 GTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATCA-ACG 854 Query 251721 ACA-AGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCAC 251774 | | ||| | || ||| | |||||| |||||| | | ||||| || | ||| Sbjct 855 AAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCAC 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027677637544326