Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq91 120 6e-22
seq1324 105 1e-17
>seq91
Length=60761
Score = 120 bits (132), Expect = 6e-22
Identities = 437/676 (65%), Gaps = 36/676 (5%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||||||| | ||| || ||||| |||||| ||||||||||||
Sbjct 11628 CGCCACTGGATGTACTGGTTTGCAGTCTCATCGAGGTGCGACTCAATGTGGTGGAAAGCA 11687
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| || ||||| || | |||||| || |||||||||| ||| ||| ||
Sbjct 11688 TGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTGCTTCCACATCTGGCCAGAAGTAGGC 11747
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
| |||| ||||| || | |||||| | || | ||| || ||||| ||||| || | |
Sbjct 11748 TCAACCTCACCGGTAAGCATCTTGATCAATGTCGACTTACCGGCACCGTTGGGTCCGAGC 11807
Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA--GAT-CTCAGGG 225217
|| | || | ||| | | || ||| ||||| ||||| | | | | |
Sbjct 11808 ACAGCGAT-----ACGAC-TCGAAA-----GAGCGCACGTCACTGAAATGTTGTTGATCG 11856
Query 225218 CCAGTTTGGT-AAGCAAAGGCCACGCCACGCAGC--TTC---------ATGATGGCACGG 225265
| ||||||| || | || | | | ||| ||| || || |
Sbjct 11857 ACGGTTTGGTCGTGCCAGGGTACTGGTATG-AGCATTTCGTCAGTCGAATAATAGGCTTT 11915
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCAC---C 225322
||||| |||| | | ||||| || |||||||||||| ||| |||| |
Sbjct 11916 CCCTTGTTCTTAATGTCAGCAAGGAAACCAGGCTCGGGGAACGTGAACT---TCACATTC 11972
Query 225323 GCGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGG 225382
| || || |||||||| | ||||| || || ||||||| |||||
Sbjct 11973 TCCGACTCAAGCTCGTAGTACGCCTTCGCCTCTGGCTTCTGCTCCACGAATTTGGACAGA 12032
Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442
|| || || || | | ||| | ||| |||| |||| ||| || ||| ||
Sbjct 12033 TTGCCCTTGTAGATCTTCAACTTACGCGTCT---CGTAGTGAATAATGTTCGTGCAGACC 12089
Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTG 225502
||| ||||| ||||||||||| ||||| ||||| || | |||||| |||||||| ||
Sbjct 12090 TTGTCGAGGAAACCAGAGTCGTGCGACACCATGATCGAGGTCACGTTAGTCAGGCCAGTG 12149
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|| | | ||||| |||||||| |||| |||| |||||| || || || || ||
Sbjct 12150 AGATAATTCTCCAGCCAAGCCACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCGAGC 12209
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
|||| ||| ||||| | || || || || | || || ||||| ||||| ||
Sbjct 12210 AGCAAGATATCAGCCTTCCGCAGCATAGCACGAGCCAGCTCCAATTTCATCTTCCAACCG 12269
Query 225623 CCGGACAGGGAGCCGA 225638
|| || || | |||||
Sbjct 12270 CCAGAAAGAGTGCCGA 12285
Score = 114 bits (126), Expect = 2e-20
Identities = 137/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508
||||| || | || ||||||||| ||| || || || || | || || |||||
Sbjct 11084 GTGAGTGATCATGACCACACCGCCGTTGAACTCCTTAATAGCCGAAGCCAGAGCACCAAG 11143
Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568
||| |||||||||||| |||||||||||||||| || | | || ||| ||| | ||||
Sbjct 11144 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCGAGCACCAAAATGTGCGGGTTCAGCCA 11203
Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628
|| || || | | ||| | ||||||||||||||| || || || || || || |||||
Sbjct 11204 CATCGCAGCGGCGAGCACGACCTTCACCTTCTGACCACCCGACAGACCACGCATGCGCGA 11263
Query 224629 GTGAGT 224634
||| ||
Sbjct 11264 GTGGGT 11269
>seq1324
Length=13147
Score = 105 bits (116), Expect = 1e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
||||||||||| || || ||||| || | || ||||| | ||||| ||||| || ||
Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||||||||| || |||||||| ||| || ||
Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2225
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
||| |||| | | || || |||| ||||| || || || || | ||||| || ||
Sbjct 2226 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAAG 2285
Query 68454 ATCTGCATTAT 68464
|||||||| ||
Sbjct 2286 ATCTGCATGAT 2296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921483165895920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |