Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq91 120 6e-22 seq1324 105 1e-17 >seq91 Length=60761 Score = 120 bits (132), Expect = 6e-22 Identities = 437/676 (65%), Gaps = 36/676 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||| | ||| || ||||| |||||| |||||||||||| Sbjct 11628 CGCCACTGGATGTACTGGTTTGCAGTCTCATCGAGGTGCGACTCAATGTGGTGGAAAGCA 11687 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || |||||||||| ||| ||| || Sbjct 11688 TGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTGCTTCCACATCTGGCCAGAAGTAGGC 11747 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| ||||| || | |||||| | || | ||| || ||||| ||||| || | | Sbjct 11748 TCAACCTCACCGGTAAGCATCTTGATCAATGTCGACTTACCGGCACCGTTGGGTCCGAGC 11807 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA--GAT-CTCAGGG 225217 || | || | ||| | | || ||| ||||| ||||| | | | | | Sbjct 11808 ACAGCGAT-----ACGAC-TCGAAA-----GAGCGCACGTCACTGAAATGTTGTTGATCG 11856 Query 225218 CCAGTTTGGT-AAGCAAAGGCCACGCCACGCAGC--TTC---------ATGATGGCACGG 225265 | ||||||| || | || | | | ||| ||| || || | Sbjct 11857 ACGGTTTGGTCGTGCCAGGGTACTGGTATG-AGCATTTCGTCAGTCGAATAATAGGCTTT 11915 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCAC---C 225322 ||||| |||| | | ||||| || |||||||||||| ||| |||| | Sbjct 11916 CCCTTGTTCTTAATGTCAGCAAGGAAACCAGGCTCGGGGAACGTGAACT---TCACATTC 11972 Query 225323 GCGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGG 225382 | || || |||||||| | ||||| || || ||||||| ||||| Sbjct 11973 TCCGACTCAAGCTCGTAGTACGCCTTCGCCTCTGGCTTCTGCTCCACGAATTTGGACAGA 12032 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || || || | | ||| | ||| |||| |||| ||| || ||| || Sbjct 12033 TTGCCCTTGTAGATCTTCAACTTACGCGTCT---CGTAGTGAATAATGTTCGTGCAGACC 12089 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTG 225502 ||| ||||| ||||||||||| ||||| ||||| || | |||||| |||||||| || Sbjct 12090 TTGTCGAGGAAACCAGAGTCGTGCGACACCATGATCGAGGTCACGTTAGTCAGGCCAGTG 12149 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 || | | ||||| |||||||| |||| |||| |||||| || || || || || Sbjct 12150 AGATAATTCTCCAGCCAAGCCACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCGAGC 12209 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 |||| ||| ||||| | || || || || | || || ||||| ||||| || Sbjct 12210 AGCAAGATATCAGCCTTCCGCAGCATAGCACGAGCCAGCTCCAATTTCATCTTCCAACCG 12269 Query 225623 CCGGACAGGGAGCCGA 225638 || || || | ||||| Sbjct 12270 CCAGAAAGAGTGCCGA 12285 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| || | || ||||||||| ||| || || || || | || || ||||| Sbjct 11084 GTGAGTGATCATGACCACACCGCCGTTGAACTCCTTAATAGCCGAAGCCAGAGCACCAAG 11143 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||||||| |||||||||||||||| || | | || ||| ||| | |||| Sbjct 11144 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCGAGCACCAAAATGTGCGGGTTCAGCCA 11203 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || || || | | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 11204 CATCGCAGCGGCGAGCACGACCTTCACCTTCTGACCACCCGACAGACCACGCATGCGCGA 11263 Query 224629 GTGAGT 224634 ||| || Sbjct 11264 GTGGGT 11269 >seq1324 Length=13147 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || ||||| || | || ||||| | ||||| ||||| || || Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||||||||| || |||||||| ||| || || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2225 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | || || |||| ||||| || || || || | ||||| || || Sbjct 2226 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAAG 2285 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 2286 ATCTGCATGAT 2296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921483165895920