Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq732 215 1e-50 >seq732 Length=22061 Score = 215 bits (238), Expect = 1e-50 Identities = 493/730 (68%), Gaps = 23/730 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| || ||| ||| ||||| || || ||||| ||||||| | || | Sbjct 9393 CTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAACTTTAGC 9334 Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || ||||| || | || || || ||||| || ||||||||||| || || || || Sbjct 9333 AATGAAGTGCAAGTGCCG-GAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAA 9275 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC--CGTC 42596 | | ||||| || || || | ||||||| |||||||||| || | || Sbjct 9274 CATCCACTCGGAAGTCTATTCG---CTGCTCATTGACACGTACATTAAAGAGGCGACGGA 9218 Query 42597 GAGCG-TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 || | | || ||| | || || ||||| || || || | ||||| || | Sbjct 9217 GAAGGATCACCTTCTGCGC---GCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAA 9161 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||||||||| ||| ||| | | | ||| || ||| ||||| | || || Sbjct 9160 TTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTACGCGGAGCGGCTGCTGGCATT 9101 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | || | ||||| ||||| |||||||||||| | ||| ||| ||||| ||||| ||| | Sbjct 9100 TGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAA 9041 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | ||| || ||||| || |||| |||||||||||| ||||| || | || ||||| Sbjct 9040 GCGCGGTCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCA 8982 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | ||||||||| |||||| ||| ||| | | || | |||||| | ||| Sbjct 8981 TGCACACGGACTTTGCGTGCCTCATGTACTC---CAAGCTAGTGAACAAGCTGCCCGAGG 8925 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 | || |||| | ||||| || || ||| ||||||| | ||||| | | | | Sbjct 8924 ACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACT 8865 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 |||||||||| ||| | ||||||||| | ||||||||| ||||||| ||| | Sbjct 8864 CGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTG 8805 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG--CCTCTACAACACGCCGTGCCC 43072 | || |||| || ||| | | | || | | || | | | | | | ||| Sbjct 8804 TAGCGGACCGCCTGTTGTACTCGCTCGGCGT--GTCGAAGATTTTCCATGCAAAGAACCC 8747 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 || |||| ||||| | |||||| | |||||||||| ||||||||||||||||| || Sbjct 8746 ATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGT 8687 Query 43133 CGCCGACTAC 43142 | ||| ||| Sbjct 8686 GGGCGAGTAC 8677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944196533955360