Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq6992 271 2e-68 seq6336 210 5e-50 seq6999 116 8e-22 >seq6992 Length=1569 Score = 271 bits (300), Expect = 2e-68 Identities = 707/1067 (66%), Gaps = 31/1067 (3%) Strand=Plus/Plus Query 22827 AGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAGCTCGATGA-GGTCGCG 22885 || |||| |||||||| |||||| | ||||| || |||| |||||| | || | || Sbjct 458 AGATCCACGCCGTTGACGATCTCGATCATGTTCATCAAATCGATCTCGATTACGGGCACG 517 Query 22886 CCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTTGAATTTAGTGTCTTC 22945 || ||| | ||||||||||||||||||| ||| ||| | || | ||||| || Sbjct 518 CC-GTTGATACTCAGCTTGTAGTAGCTGGCCGACGTCTTGACCGAAAACTCGGTGTCATC 576 Query 22946 CTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTTCACTACCACTTCGAT 23005 | ||| |||| || || ||||| | ||| ||||| ||| || | ||| | Sbjct 577 GCCGGACTTGCCGGTACCGGGATCAATCTCCTTGTGACGGCCGCGCACAACAATTTCCAC 636 Query 23006 CTGGTCGTGCTTCTTGCTGTCCTCGCGACGATAGCCGCCGGCGAAGCGCAGCAGCACGCC 23065 | || || || || ||||| | ||| ||||||| ||||||||| ||||| | Sbjct 637 CGCATCCACCTCGGTGGAATCGTCGCGCTGGTAGGCGCCGGCAAAGCGCAGCTGCACGGC 696 Query 23066 GTCGTGCTGCACGGCGCCGTACTGTTCGAGCACTTCGACCATGAAGCCGCCGCACGTCCA 23125 || |||| |||||||||||| | || || | ||| | |||||||||| |||| Sbjct 697 GTTGTGCGTGGTGGCGCCGTACTGATTCAGTACGCTGCGCATCAGGCCGCCGCACTTCCA 756 Query 23126 CTCGAGCTGGAGCTCTTCGCTGCCGTAGTCGATTTTCACGGGGCCGGTCATGCCGCTGCC 23185 ||||||| || || || |||| ||||||| | || ||||| |||| |||| ||| Sbjct 757 TTCGAGCTCGATCTTCTCCTGGCCGAAGTCGATGTCGACCGGGCCATTCATACCGCCGCC 816 Query 23186 CTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAAGATTGAGCTCTTCGACTTCGCCGAC 23245 | || | ||||||||||| ||| | || || || | || | || | ||||| Sbjct 817 GCGATACTCCTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTTCGACCACCTGGCCGAG 876 Query 23246 GAAGTTCGCGCCGTTGTGAAAGACGTTGAAGCCCTTCAGTTTTCGAGGCATACCCATTGC 23305 || || | |||| || || | ||||| | || ||||| |||| | |||| | Sbjct 877 ATAGCTCTCACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTCTTGGGCAAAGCCATGGG 936 Query 23306 ATTTGACTCCTG-----TTAGCC-----CGCCACGCG----CGC---CGG-GAAATCGGC 23347 || |||| | | || | || ||||| ||| ||| ||| ||||| Sbjct 937 GTT---CTCCGGGAATCTGAGGCGGGTGCGTTACGCGTTGACGCGTTCGGCGAAGTCGGC 993 Query 23348 GAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGT 23407 ||| ||| | |||||| || | |||| || || || || || || |||||||| Sbjct 994 CAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAAGTTCTCCAGCGGTGGCACCGGCGT 1053 Query 23408 GTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTCGGC-TCCG 23466 |||||| ||||||||| | | ||| ||||| || ||| |||| | | | Sbjct 1054 GTAGTCGTAATCGATGCGCAGCGCGCCATCGGCGAGCGTGGTGGCGCTGTTGACCATGCC 1113 Query 23467 GATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG-CGACCT--GCTGCCGAAACC 23523 | ||| ||| ||| | | |||||| |||||| || |||| | | | || ||| Sbjct 1114 G-TCGTACCAGGCGTTGGCATCGATCAAGTAGCC---CGACGACTTCAGGTCGCGGAACT 1169 Query 23524 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 23583 | ||||||| |||| | | || | | ||||| || | || ||| ||||||| Sbjct 1170 TGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGGGTGCATCGGTTTGTCGACGT 1229 Query 23584 CGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 23643 | | | |||||||||| | ||||| | ||| |||||||||||| ||| Sbjct 1230 AGAACGCCACGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCT 1289 Query 23644 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGC 23703 |||| |||||| | || |||| |||||||||| |||||||| || ||||||| Sbjct 1290 CGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGA 1349 Query 23704 GGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCT 23763 |||| ||||| || | ||| |||||| ||| ||| |||||||| ||||| |||| Sbjct 1350 ACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGATCCT 1409 Query 23764 GCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAA 23823 ||| |||||| ||| || | |||||||| ||||| |||| || || || | Sbjct 1410 GCAGATCCCAATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACA 1469 Query 23824 TCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCG 23870 ||||||||||||| ||| |||||||||| || |||| |||| Sbjct 1470 GGCTCTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCG 1516 Score = 109 bits (120), Expect = 1e-19 Identities = 241/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 22317 TTCGGCCAGGGAGAAGGCGGCCATATCGCGCGGCGTCCAGCCAAACACCGTCGCGATATC 22376 |||| ||| || || || |||| || ||||| |||| || | | |||||| || Sbjct 2 TTCGTGCAGCGACCAGCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTC 61 Query 22377 GGCCATCGCGTCTTCTACGCGGGCCGGGATTCCATGCTCGCTTTCAGCGCCTTCGGCATC 22436 ||||||||| || ||||||| | | || | ||| ||| | | | | |||||||||| Sbjct 62 GGCCATCGCATCCTCTACGCAGTCGGGAAATCC--GCTTCCCT-CTGGGCCTTCGGCAAG 118 Query 22437 AAAAAA-CCGGCGAAGATACCCCCCAAC-GCCACGAGGTCGGCCGGGTCCATGCCGGCCA 22494 |||||| || || | | | || || |||| ||||||||||| ||||| | | Sbjct 119 AAAAAAACCTGC--ACCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGA 176 Query 22495 CGTCGAACTCGGTCAGCGTCGGCGTGCTGATGCGCGGCAACA-CCTTGCGCAGCGCGTCG 22553 ||||| ||||||||| |||| | ||||| |||| || |||| ||||||| | Sbjct 177 CGTCGGCGGTGGTCAGCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGC-CAGCGCGGTG 235 Query 22554 ACATCGAGATTCACGAGTGCGGCGAGCGACGTGCCGCGCAGCGCGCCCGCGGCCGGCTTG 22613 ||||| || | || | ||| |||| ||||||||| |||| ||| | |||||| Sbjct 236 ACATCCAGCTGCAGCACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTG 295 Query 22614 CGCAACGTCACCTGCGTGATGGTCTGCCCTTCGCGCTCGATCGGTGTGTCGAG 22666 || | | | | | |||||||||||| | ||||| ||| || |||||| Sbjct 296 CGGACCTTGAGGTCGGTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAG 348 >seq6336 Length=1727 Score = 210 bits (232), Expect = 5e-50 Identities = 276/373 (74%), Gaps = 12/373 (3%) Strand=Plus/Plus Query 3415 CCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATA 3474 ||| ||||| || || || ||||| ||| || |||||||| ||||| |||||||||| Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420 Query 3475 CTTTTGGGT-TCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCACA 3533 ||| ||| | || |||| ||| ||||||||||| || |||||||||||||||| Sbjct 1421 CTTCTGGACCTACGG-GTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACA 1479 Query 3534 AGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGT 3593 || ||||||||||||||||||||||| || ||||| | | |||||||| | | ||| Sbjct 1480 AGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGT 1539 Query 3594 TCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG-AGCGCATCCAGATCGA- 3651 | |||| ||||| || | || | | || | |||| |||| |||| ||||||||||| Sbjct 1540 TTTGGACCGGCGAGCGC-CGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGAT 1598 Query 3652 --CACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGA-CGCGCAGTGGCGGCA 3708 | || ||||| ||||| | |||| ||| |||| ||||| |||||||| Sbjct 1599 GTCTCG---CACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGC-CTGGCGGCA 1654 Query 3709 GATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCT 3768 |||||| | | | |||||||| | | |||||| |||||||||| ||||||||||| Sbjct 1655 GATCGTCAACATCCTCGACGCCCAGCGCCGTGGCTGCGACCTGTTCGATATCGACGAGCT 1714 Query 3769 GCGCCGCGAATAC 3781 |||| |||||| Sbjct 1715 GCGCGAGGAATAC 1727 Score = 143 bits (158), Expect = 6e-30 Identities = 303/446 (68%), Gaps = 22/446 (5%) Strand=Plus/Plus Query 2878 CGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGAGAA 2937 ||| |||||||||| | | ||||||| |||| || | ||| |||| |||| | | Sbjct 926 CGTTGAGCGCATCGGTGGCGCACTCGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGA 985 Query 2938 GAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 2997 ||| ||||| || | ||||||||| || ||||| || || | ||||| | || Sbjct 986 AAAGTCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGC 1045 Query 2998 GCGCGT---GCGCAAGTACGACGAGACGGGG--AAGGAATCGGACCTGAACCCGAAGATT 3052 |||| | |||| ||| | || ||| | || ||| | || ||||| ||| | Sbjct 1046 GCGCATCCAGCGC---TACCA--AGGCGGCGGCAACGAAGCCGATCTGAATCCGGCTGTC 1100 Query 3053 GCGTCGCGCAACGCCGGCCCGAA-----ACGCCGTGCGCCCCGTAACGAAATCAGCGACG 3107 || |||||||| | || || | || |||| ||||| ||| || | Sbjct 1101 GCCAATCGCAACGCTGCGCCAAAGAAAAAACCCAAGCGC-----AACGACTTCACTGAAG 1155 Query 3108 AACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTG-TTCGACTATCAGAAAGTC 3166 ||||| | ||| | | | |||||| ||| |||| |||||||| ||| | Sbjct 1156 AACAGGTCGAGCAGCTGACCACCGCGTTCGTCGACG-GCTGCTTCGACTACCAGCGCGAT 1214 Query 3167 TGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCG 3226 ||||| ||| |||| | ||||||| |||| |||||| || ||||| ||||||||||| Sbjct 1215 TGGTACCGGGCCGGCAACGAGCGCACCCGCATCATCCTCAAGTCGCGCCAGATCGGTGCA 1274 Query 3227 ACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGACCGCAATCAGATC 3286 |||| |||||||| ||||| ||||| |||| |||||| ||||| ||||||||||| Sbjct 1275 ACGTTTTACTTCGCTCGCGAAGCGCTGATCGATGCGCTCACCACCGGGCGCAATCAGATT 1334 Query 3287 TTCCTATCGGCCAGCAAGGCGCAGGC 3312 ||| | ||| |||||||||||| Sbjct 1335 TTCTTGAGCGCCTCCAAGGCGCAGGC 1360 Score = 89.7 bits (98), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 2157 GGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCAACGAGATACGCCTCGCCGAT 2216 |||||| ||||| ||||| |||||| |||| || || ||||||||||||| |||| | Sbjct 209 GGTGCCCAGGCTGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGT 268 Query 2217 GTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGAAGAGCTTCTGGCGCTT---CTTCGA 2273 || |||||| | | | |||||| ||| ||||||||| |||| ||| Sbjct 269 GTTGGCGAATTTCTCCTGCACCTCGATGCTGGTGTAGAGCTTCT---GCTTGGACTTGTT 325 Query 2274 CAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGCGCCATCTTCCCTTTCAG 2333 | | || || ||| ||||||| |||||||| ||| ||||||||| | ||| | Sbjct 326 GATGGTGATCAGGTCGGCGGTCGGCTCGATCTGGGCAAACAGCGCCA--GGCGCTTGGTG 383 Query 2334 CGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCACGTCGCCATACGCGCCGAACGG 2393 | | || |||| ||| | || |||| || | || ||||||||||| | |||||| Sbjct 384 CCATCGATC-TCGACCTCTTCGGCTTTCACTGCAGTGACATCGCCATACGCACGGAACGG 442 >seq6999 Length=1567 Score = 116 bits (128), Expect = 8e-22 Identities = 509/780 (65%), Gaps = 34/780 (4%) Strand=Plus/Plus Query 17822 TTTCGAGCTCGAGCGCGGTCGTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTC- 17880 |||| |||| ||||| ||| ||||||| || | || || |||||| ||||| || | Sbjct 487 TTTCAAGCTTGAGCGATGTCTTGAATCCGTCGCCCCCAATAGTGTGCAGTGTCT-CTCCG 545 Query 17881 ACGAGCCACGGCGTCTCGT--CGATTTCCGGTTTGAAGCCTGACACGGTCACGGGCATTT 17938 | ||||| |||| ||| |||| || || || || || | ||||| ||| | Sbjct 546 ATAAGCCA--GCGTTGCGTATCGATCTCAGGCTTTAAACCGCTAAACGTCACCCGCAGCT 603 Query 17939 CCGGGAACAGTTCGGCGCGGCCGCGCGCGAGCGTGTAGCTC-ATCGTCGCCTGGCTGCGC 17997 | || || | || || |||||| | || | |||||| ||| | | ||||| || ||| Sbjct 604 CGGGAAAGACATCCGCCCGGCCGAGAGCCAACGTGTA-CTCGAACTTCGCCACGCCGCGT 662 Query 17998 TGCATCCGCTTGAACTCCGCTTGCGCG-GCAGCGCGCGCTTCCGCCTCCGTCGCGTAGTC 18056 | || ||||| | |||||| ||||| || | ||| || ||||| || || Sbjct 663 TTCACCCGCTCCAGCTCCGCATGCGCATGCTG-GCGTGCCGTTGCCTCATCGGCATACGA 721 Query 18057 TTCCGGCAGCACCTTCACGTTCTTGTTGTTCTCACCGCCGACGATGACCGACTTCCGCTT 18116 || |||| ||| |||| | || || |||||| | ||||||| |||| Sbjct 722 CTCGCGCAGGCGCTTGGCGTTGTCGTCTTT------GCCGACCAGCACCGACTGCCGCCG 775 Query 18117 CGCGCGGCCG--GTCGAATGGTAGTGCGCGCGCACGGCCGCGTAGTTCTCGCGTTCGGAC 18174 || ||| ||| | ||| |||||||||| | | |||| ||||| |||| Sbjct 776 TGCCTTGCCTTTGTCCACCC--AGTACGCGCGCACGCCGGTGTAGGCATCGCGGTCGGCA 833 Query 18175 ACGTGGTAACGATGACTGTCGCCGCTCGCGC-GCGTCAGTTCGAGCACGTCG--AGCTGC 18231 ||| |||||| || |||||| |||||| ||||||| || || |||| ||| | Sbjct 834 ACGGAGTAACGGTGTTGGTCGCCT-TCGCGCCGCGTCAGGGTGA-CA-GTCGGCAGCGGT 890 Query 18232 TTTCCGCTCGCCGTCTGGCCGGTGCCGATCGGCATGAACAGCAAGCGTAGATCCTTCACG 18291 || ||| |||| || ||||| |||||||||| |||| ||| | |||| || Sbjct 891 TTGCCGGTCGCTGTGGTGCCGGCGCCGATCGGCGCAAACACCAATGCTCCTGCCTTGACC 950 Query 18292 TTCATGACGGCGTCATAGCGCTTCGCCAGGCGCGTCAGAAACGACATGTCCGATTCGTGC 18351 | ||| || || |||||| |||||||||| || | ||| || |||| Sbjct 951 GTGGCGACCGCATCGAAGCGCTGGCCCAGGCGCGTGAGCAGATTCATATCGCTCTCGTTG 1010 Query 18352 GTCTGGTCGATGTGCGCGATC--AGGACCTTCGCGAGCGCGTCGCCGACGATCGGCGCCA 18409 | |||||||| || | | | || | | || ||||| || | ||| ||| | || Sbjct 1011 GCCTGGTCGAGATGGGGCAACTTAGTGCGT--GCCAGCGCCTCCGCCACGCGCGGGGTCA 1068 Query 18410 GCGAGTAGCGC-CCGGCGATCGCGTGGACGATCGAGCCGATCGTC-TGTCGATGCCAGCT 18467 | | || | ||||| | | | || | | ||| | ||| ||| | |||||||| Sbjct 1069 GTCCAT-GCTCGCCGGCCAGGGTATTGAGCACGGCGCCCAACGTGGTGTTG-TGCCAGCT 1126 Query 18468 CTTCTCGCGGCGCTCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGAC 18527 |||||| ||| ||||| | |||| | || |||||||| | ||||| Sbjct 1127 GCGCTCGCGCCGCGTGCGCATGTCTGCAGTCAGATCCGCACTACGCGCGCGCACGGTGAT 1186 Query 18528 GATGTCCGGCGCGCCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGAG 18587 |||||| ||||||||||||| ||| || |||| ||| | |||| |||| |||||||| || Sbjct 1187 GATGTCGGGCGCGCCGCTGTACTCCACCTCGTCCACGATGAAGGTGCCTTTGTCGACCAG 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114233202754596