Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_009234.1
Length=35741
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 271 2e-68
seq6336 210 5e-50
seq6999 116 8e-22
>seq6992
Length=1569
Score = 271 bits (300), Expect = 2e-68
Identities = 707/1067 (66%), Gaps = 31/1067 (3%)
Strand=Plus/Plus
Query 22827 AGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAGCTCGATGA-GGTCGCG 22885
|| |||| |||||||| |||||| | ||||| || |||| |||||| | || | ||
Sbjct 458 AGATCCACGCCGTTGACGATCTCGATCATGTTCATCAAATCGATCTCGATTACGGGCACG 517
Query 22886 CCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTTGAATTTAGTGTCTTC 22945
|| ||| | ||||||||||||||||||| ||| ||| | || | ||||| ||
Sbjct 518 CC-GTTGATACTCAGCTTGTAGTAGCTGGCCGACGTCTTGACCGAAAACTCGGTGTCATC 576
Query 22946 CTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTTCACTACCACTTCGAT 23005
| ||| |||| || || ||||| | ||| ||||| ||| || | ||| |
Sbjct 577 GCCGGACTTGCCGGTACCGGGATCAATCTCCTTGTGACGGCCGCGCACAACAATTTCCAC 636
Query 23006 CTGGTCGTGCTTCTTGCTGTCCTCGCGACGATAGCCGCCGGCGAAGCGCAGCAGCACGCC 23065
| || || || || ||||| | ||| ||||||| ||||||||| ||||| |
Sbjct 637 CGCATCCACCTCGGTGGAATCGTCGCGCTGGTAGGCGCCGGCAAAGCGCAGCTGCACGGC 696
Query 23066 GTCGTGCTGCACGGCGCCGTACTGTTCGAGCACTTCGACCATGAAGCCGCCGCACGTCCA 23125
|| |||| |||||||||||| | || || | ||| | |||||||||| ||||
Sbjct 697 GTTGTGCGTGGTGGCGCCGTACTGATTCAGTACGCTGCGCATCAGGCCGCCGCACTTCCA 756
Query 23126 CTCGAGCTGGAGCTCTTCGCTGCCGTAGTCGATTTTCACGGGGCCGGTCATGCCGCTGCC 23185
||||||| || || || |||| ||||||| | || ||||| |||| |||| |||
Sbjct 757 TTCGAGCTCGATCTTCTCCTGGCCGAAGTCGATGTCGACCGGGCCATTCATACCGCCGCC 816
Query 23186 CTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAAGATTGAGCTCTTCGACTTCGCCGAC 23245
| || | ||||||||||| ||| | || || || | || | || | |||||
Sbjct 817 GCGATACTCCTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTTCGACCACCTGGCCGAG 876
Query 23246 GAAGTTCGCGCCGTTGTGAAAGACGTTGAAGCCCTTCAGTTTTCGAGGCATACCCATTGC 23305
|| || | |||| || || | ||||| | || ||||| |||| | |||| |
Sbjct 877 ATAGCTCTCACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTCTTGGGCAAAGCCATGGG 936
Query 23306 ATTTGACTCCTG-----TTAGCC-----CGCCACGCG----CGC---CGG-GAAATCGGC 23347
|| |||| | | || | || ||||| ||| ||| ||| |||||
Sbjct 937 GTT---CTCCGGGAATCTGAGGCGGGTGCGTTACGCGTTGACGCGTTCGGCGAAGTCGGC 993
Query 23348 GAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGT 23407
||| ||| | |||||| || | |||| || || || || || || ||||||||
Sbjct 994 CAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAAGTTCTCCAGCGGTGGCACCGGCGT 1053
Query 23408 GTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTCGGC-TCCG 23466
|||||| ||||||||| | | ||| ||||| || ||| |||| | | |
Sbjct 1054 GTAGTCGTAATCGATGCGCAGCGCGCCATCGGCGAGCGTGGTGGCGCTGTTGACCATGCC 1113
Query 23467 GATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG-CGACCT--GCTGCCGAAACC 23523
| ||| ||| ||| | | |||||| |||||| || |||| | | | || |||
Sbjct 1114 G-TCGTACCAGGCGTTGGCATCGATCAAGTAGCC---CGACGACTTCAGGTCGCGGAACT 1169
Query 23524 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 23583
| ||||||| |||| | | || | | ||||| || | || ||| |||||||
Sbjct 1170 TGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGGGTGCATCGGTTTGTCGACGT 1229
Query 23584 CGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 23643
| | | |||||||||| | ||||| | ||| |||||||||||| |||
Sbjct 1230 AGAACGCCACGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCT 1289
Query 23644 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGC 23703
|||| |||||| | || |||| |||||||||| |||||||| || |||||||
Sbjct 1290 CGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGA 1349
Query 23704 GGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCT 23763
|||| ||||| || | ||| |||||| ||| ||| |||||||| ||||| ||||
Sbjct 1350 ACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGATCCT 1409
Query 23764 GCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAA 23823
||| |||||| ||| || | |||||||| ||||| |||| || || || |
Sbjct 1410 GCAGATCCCAATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACA 1469
Query 23824 TCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCG 23870
||||||||||||| ||| |||||||||| || |||| ||||
Sbjct 1470 GGCTCTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCG 1516
Score = 109 bits (120), Expect = 1e-19
Identities = 241/353 (68%), Gaps = 9/353 (3%)
Strand=Plus/Plus
Query 22317 TTCGGCCAGGGAGAAGGCGGCCATATCGCGCGGCGTCCAGCCAAACACCGTCGCGATATC 22376
|||| ||| || || || |||| || ||||| |||| || | | |||||| ||
Sbjct 2 TTCGTGCAGCGACCAGCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTC 61
Query 22377 GGCCATCGCGTCTTCTACGCGGGCCGGGATTCCATGCTCGCTTTCAGCGCCTTCGGCATC 22436
||||||||| || ||||||| | | || | ||| ||| | | | | ||||||||||
Sbjct 62 GGCCATCGCATCCTCTACGCAGTCGGGAAATCC--GCTTCCCT-CTGGGCCTTCGGCAAG 118
Query 22437 AAAAAA-CCGGCGAAGATACCCCCCAAC-GCCACGAGGTCGGCCGGGTCCATGCCGGCCA 22494
|||||| || || | | | || || |||| ||||||||||| ||||| | |
Sbjct 119 AAAAAAACCTGC--ACCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGA 176
Query 22495 CGTCGAACTCGGTCAGCGTCGGCGTGCTGATGCGCGGCAACA-CCTTGCGCAGCGCGTCG 22553
||||| ||||||||| |||| | ||||| |||| || |||| ||||||| |
Sbjct 177 CGTCGGCGGTGGTCAGCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGC-CAGCGCGGTG 235
Query 22554 ACATCGAGATTCACGAGTGCGGCGAGCGACGTGCCGCGCAGCGCGCCCGCGGCCGGCTTG 22613
||||| || | || | ||| |||| ||||||||| |||| ||| | ||||||
Sbjct 236 ACATCCAGCTGCAGCACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTG 295
Query 22614 CGCAACGTCACCTGCGTGATGGTCTGCCCTTCGCGCTCGATCGGTGTGTCGAG 22666
|| | | | | | |||||||||||| | ||||| ||| || ||||||
Sbjct 296 CGGACCTTGAGGTCGGTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAG 348
>seq6336
Length=1727
Score = 210 bits (232), Expect = 5e-50
Identities = 276/373 (74%), Gaps = 12/373 (3%)
Strand=Plus/Plus
Query 3415 CCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATA 3474
||| ||||| || || || ||||| ||| || |||||||| ||||| ||||||||||
Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420
Query 3475 CTTTTGGGT-TCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCACA 3533
||| ||| | || |||| ||| ||||||||||| || ||||||||||||||||
Sbjct 1421 CTTCTGGACCTACGG-GTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACA 1479
Query 3534 AGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGT 3593
|| ||||||||||||||||||||||| || ||||| | | |||||||| | | |||
Sbjct 1480 AGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGT 1539
Query 3594 TCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG-AGCGCATCCAGATCGA- 3651
| |||| ||||| || | || | | || | |||| |||| |||| |||||||||||
Sbjct 1540 TTTGGACCGGCGAGCGC-CGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGAT 1598
Query 3652 --CACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGA-CGCGCAGTGGCGGCA 3708
| || ||||| ||||| | |||| ||| |||| ||||| ||||||||
Sbjct 1599 GTCTCG---CACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGC-CTGGCGGCA 1654
Query 3709 GATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCT 3768
|||||| | | | |||||||| | | |||||| |||||||||| |||||||||||
Sbjct 1655 GATCGTCAACATCCTCGACGCCCAGCGCCGTGGCTGCGACCTGTTCGATATCGACGAGCT 1714
Query 3769 GCGCCGCGAATAC 3781
|||| ||||||
Sbjct 1715 GCGCGAGGAATAC 1727
Score = 143 bits (158), Expect = 6e-30
Identities = 303/446 (68%), Gaps = 22/446 (5%)
Strand=Plus/Plus
Query 2878 CGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGAGAA 2937
||| |||||||||| | | ||||||| |||| || | ||| |||| |||| | |
Sbjct 926 CGTTGAGCGCATCGGTGGCGCACTCGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGA 985
Query 2938 GAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 2997
||| ||||| || | ||||||||| || ||||| || || | ||||| | ||
Sbjct 986 AAAGTCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGC 1045
Query 2998 GCGCGT---GCGCAAGTACGACGAGACGGGG--AAGGAATCGGACCTGAACCCGAAGATT 3052
|||| | |||| ||| | || ||| | || ||| | || ||||| ||| |
Sbjct 1046 GCGCATCCAGCGC---TACCA--AGGCGGCGGCAACGAAGCCGATCTGAATCCGGCTGTC 1100
Query 3053 GCGTCGCGCAACGCCGGCCCGAA-----ACGCCGTGCGCCCCGTAACGAAATCAGCGACG 3107
|| |||||||| | || || | || |||| ||||| ||| || |
Sbjct 1101 GCCAATCGCAACGCTGCGCCAAAGAAAAAACCCAAGCGC-----AACGACTTCACTGAAG 1155
Query 3108 AACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTG-TTCGACTATCAGAAAGTC 3166
||||| | ||| | | | |||||| ||| |||| |||||||| ||| |
Sbjct 1156 AACAGGTCGAGCAGCTGACCACCGCGTTCGTCGACG-GCTGCTTCGACTACCAGCGCGAT 1214
Query 3167 TGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCG 3226
||||| ||| |||| | ||||||| |||| |||||| || ||||| |||||||||||
Sbjct 1215 TGGTACCGGGCCGGCAACGAGCGCACCCGCATCATCCTCAAGTCGCGCCAGATCGGTGCA 1274
Query 3227 ACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGACCGCAATCAGATC 3286
|||| |||||||| ||||| ||||| |||| |||||| ||||| |||||||||||
Sbjct 1275 ACGTTTTACTTCGCTCGCGAAGCGCTGATCGATGCGCTCACCACCGGGCGCAATCAGATT 1334
Query 3287 TTCCTATCGGCCAGCAAGGCGCAGGC 3312
||| | ||| ||||||||||||
Sbjct 1335 TTCTTGAGCGCCTCCAAGGCGCAGGC 1360
Score = 89.7 bits (98), Expect = 1e-13
Identities = 166/240 (69%), Gaps = 9/240 (4%)
Strand=Plus/Plus
Query 2157 GGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCAACGAGATACGCCTCGCCGAT 2216
|||||| ||||| ||||| |||||| |||| || || ||||||||||||| |||| |
Sbjct 209 GGTGCCCAGGCTGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGT 268
Query 2217 GTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGAAGAGCTTCTGGCGCTT---CTTCGA 2273
|| |||||| | | | |||||| ||| ||||||||| |||| |||
Sbjct 269 GTTGGCGAATTTCTCCTGCACCTCGATGCTGGTGTAGAGCTTCT---GCTTGGACTTGTT 325
Query 2274 CAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGCGCCATCTTCCCTTTCAG 2333
| | || || ||| ||||||| |||||||| ||| ||||||||| | ||| |
Sbjct 326 GATGGTGATCAGGTCGGCGGTCGGCTCGATCTGGGCAAACAGCGCCA--GGCGCTTGGTG 383
Query 2334 CGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCACGTCGCCATACGCGCCGAACGG 2393
| | || |||| ||| | || |||| || | || ||||||||||| | ||||||
Sbjct 384 CCATCGATC-TCGACCTCTTCGGCTTTCACTGCAGTGACATCGCCATACGCACGGAACGG 442
>seq6999
Length=1567
Score = 116 bits (128), Expect = 8e-22
Identities = 509/780 (65%), Gaps = 34/780 (4%)
Strand=Plus/Plus
Query 17822 TTTCGAGCTCGAGCGCGGTCGTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTC- 17880
|||| |||| ||||| ||| ||||||| || | || || |||||| ||||| || |
Sbjct 487 TTTCAAGCTTGAGCGATGTCTTGAATCCGTCGCCCCCAATAGTGTGCAGTGTCT-CTCCG 545
Query 17881 ACGAGCCACGGCGTCTCGT--CGATTTCCGGTTTGAAGCCTGACACGGTCACGGGCATTT 17938
| ||||| |||| ||| |||| || || || || || | ||||| ||| |
Sbjct 546 ATAAGCCA--GCGTTGCGTATCGATCTCAGGCTTTAAACCGCTAAACGTCACCCGCAGCT 603
Query 17939 CCGGGAACAGTTCGGCGCGGCCGCGCGCGAGCGTGTAGCTC-ATCGTCGCCTGGCTGCGC 17997
| || || | || || |||||| | || | |||||| ||| | | ||||| || |||
Sbjct 604 CGGGAAAGACATCCGCCCGGCCGAGAGCCAACGTGTA-CTCGAACTTCGCCACGCCGCGT 662
Query 17998 TGCATCCGCTTGAACTCCGCTTGCGCG-GCAGCGCGCGCTTCCGCCTCCGTCGCGTAGTC 18056
| || ||||| | |||||| ||||| || | ||| || ||||| || ||
Sbjct 663 TTCACCCGCTCCAGCTCCGCATGCGCATGCTG-GCGTGCCGTTGCCTCATCGGCATACGA 721
Query 18057 TTCCGGCAGCACCTTCACGTTCTTGTTGTTCTCACCGCCGACGATGACCGACTTCCGCTT 18116
|| |||| ||| |||| | || || |||||| | ||||||| ||||
Sbjct 722 CTCGCGCAGGCGCTTGGCGTTGTCGTCTTT------GCCGACCAGCACCGACTGCCGCCG 775
Query 18117 CGCGCGGCCG--GTCGAATGGTAGTGCGCGCGCACGGCCGCGTAGTTCTCGCGTTCGGAC 18174
|| ||| ||| | ||| |||||||||| | | |||| ||||| ||||
Sbjct 776 TGCCTTGCCTTTGTCCACCC--AGTACGCGCGCACGCCGGTGTAGGCATCGCGGTCGGCA 833
Query 18175 ACGTGGTAACGATGACTGTCGCCGCTCGCGC-GCGTCAGTTCGAGCACGTCG--AGCTGC 18231
||| |||||| || |||||| |||||| ||||||| || || |||| ||| |
Sbjct 834 ACGGAGTAACGGTGTTGGTCGCCT-TCGCGCCGCGTCAGGGTGA-CA-GTCGGCAGCGGT 890
Query 18232 TTTCCGCTCGCCGTCTGGCCGGTGCCGATCGGCATGAACAGCAAGCGTAGATCCTTCACG 18291
|| ||| |||| || ||||| |||||||||| |||| ||| | |||| ||
Sbjct 891 TTGCCGGTCGCTGTGGTGCCGGCGCCGATCGGCGCAAACACCAATGCTCCTGCCTTGACC 950
Query 18292 TTCATGACGGCGTCATAGCGCTTCGCCAGGCGCGTCAGAAACGACATGTCCGATTCGTGC 18351
| ||| || || |||||| |||||||||| || | ||| || ||||
Sbjct 951 GTGGCGACCGCATCGAAGCGCTGGCCCAGGCGCGTGAGCAGATTCATATCGCTCTCGTTG 1010
Query 18352 GTCTGGTCGATGTGCGCGATC--AGGACCTTCGCGAGCGCGTCGCCGACGATCGGCGCCA 18409
| |||||||| || | | | || | | || ||||| || | ||| ||| | ||
Sbjct 1011 GCCTGGTCGAGATGGGGCAACTTAGTGCGT--GCCAGCGCCTCCGCCACGCGCGGGGTCA 1068
Query 18410 GCGAGTAGCGC-CCGGCGATCGCGTGGACGATCGAGCCGATCGTC-TGTCGATGCCAGCT 18467
| | || | ||||| | | | || | | ||| | ||| ||| | ||||||||
Sbjct 1069 GTCCAT-GCTCGCCGGCCAGGGTATTGAGCACGGCGCCCAACGTGGTGTTG-TGCCAGCT 1126
Query 18468 CTTCTCGCGGCGCTCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGAC 18527
|||||| ||| ||||| | |||| | || |||||||| | |||||
Sbjct 1127 GCGCTCGCGCCGCGTGCGCATGTCTGCAGTCAGATCCGCACTACGCGCGCGCACGGTGAT 1186
Query 18528 GATGTCCGGCGCGCCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGAG 18587
|||||| ||||||||||||| ||| || |||| ||| | |||| |||| |||||||| ||
Sbjct 1187 GATGTCGGGCGCGCCGCTGTACTCCACCTCGTCCACGATGAAGGTGCCTTTGTCGACCAG 1246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114233202754596
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