Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq6992 266 8e-67 seq6336 230 5e-56 seq6999 118 2e-22 >seq6992 Length=1569 Score = 266 bits (294), Expect = 8e-67 Identities = 706/1067 (66%), Gaps = 31/1067 (3%) Strand=Plus/Plus Query 23831 AGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAGCTCGATGA-GGTCGCG 23889 || |||| |||||||| |||||| | ||||| || |||| |||||| | || | || Sbjct 458 AGATCCACGCCGTTGACGATCTCGATCATGTTCATCAAATCGATCTCGATTACGGGCACG 517 Query 23890 CCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTTGAATTTAGTGTCTTC 23949 || ||| | ||||||||||||||||||| ||| ||| | || | ||||| || Sbjct 518 CC-GTTGATACTCAGCTTGTAGTAGCTGGCCGACGTCTTGACCGAAAACTCGGTGTCATC 576 Query 23950 CTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTTCACTACCACTTCGAT 24009 | ||| |||| || || ||||| | ||| ||||| ||| || | ||| | Sbjct 577 GCCGGACTTGCCGGTACCGGGATCAATCTCCTTGTGACGGCCGCGCACAACAATTTCCAC 636 Query 24010 CTGGTCGTGCTTCTTGCTGTCCTCGCGACGATAGCCGCCGGCGAAGCGCAGCAGCACGCC 24069 | || || || || ||||| | ||| ||||||| ||||||||| ||||| | Sbjct 637 CGCATCCACCTCGGTGGAATCGTCGCGCTGGTAGGCGCCGGCAAAGCGCAGCTGCACGGC 696 Query 24070 GTCGTGCTGTACGGCGCCGTACTGTTCGAGCACTTCGACCATGAAGCCGCCGCACGTCCA 24129 || |||| |||||||||||| | || || | ||| | |||||||||| |||| Sbjct 697 GTTGTGCGTGGTGGCGCCGTACTGATTCAGTACGCTGCGCATCAGGCCGCCGCACTTCCA 756 Query 24130 CTCGAGCTGGAGCTCTTCGCTGCCGTAGTCGATTTTCACGGGGCCGGTCATGCCGCTGCC 24189 ||||||| || || || |||| ||||||| | || ||||| |||| |||| ||| Sbjct 757 TTCGAGCTCGATCTTCTCCTGGCCGAAGTCGATGTCGACCGGGCCATTCATACCGCCGCC 816 Query 24190 CTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAAGATTGAGCTCTTCGACTTCGCCCAC 24249 | || | ||||||||||| ||| | || || || | || | || | ||| | Sbjct 817 GCGATACTCCTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTTCGACCACCTGGCCGAG 876 Query 24250 GAAGTTCGCGCCGTTGTGAAAGACGTTGAAGCCCTTCAGTTTTCGAGGCATACCCATTGC 24309 || || | |||| || || | ||||| | || ||||| |||| | |||| | Sbjct 877 ATAGCTCTCACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTCTTGGGCAAAGCCATGGG 936 Query 24310 ATTTGACTCCTG-----TTAGCC-----CGCCACGCG----CGC---CGG-GAAATCGGC 24351 || |||| | | || | || ||||| ||| ||| ||| ||||| Sbjct 937 GTT---CTCCGGGAATCTGAGGCGGGTGCGTTACGCGTTGACGCGTTCGGCGAAGTCGGC 993 Query 24352 GAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGT 24411 ||| ||| | |||||| || | |||| || || || || || || |||||||| Sbjct 994 CAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAAGTTCTCCAGCGGTGGCACCGGCGT 1053 Query 24412 GTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTCGGC-TCCG 24470 |||||||||||||||| | | ||| ||||| || ||| |||| | | | Sbjct 1054 GTAGTCGTAATCGATGCGCAGCGCGCCATCGGCGAGCGTGGTGGCGCTGTTGACCATGCC 1113 Query 24471 GATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG-CGACCT--GCTGCCGAAACC 24527 | ||| ||| ||| | | |||||| |||||| || |||| | | | || ||| Sbjct 1114 G-TCGTACCAGGCGTTGGCATCGATCAAGTAGCC---CGACGACTTCAGGTCGCGGAACT 1169 Query 24528 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 24587 | ||||||| |||| | | || | | ||||| || | || ||| ||||||| Sbjct 1170 TGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGGGTGCATCGGTTTGTCGACGT 1229 Query 24588 CGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 24647 | | | |||||||||| | ||| | | ||| |||||||||||| ||| Sbjct 1230 AGAACGCCACGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCT 1289 Query 24648 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGC 24707 |||| |||||| | || |||| |||||||||| |||||||| || ||||||| Sbjct 1290 CGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGA 1349 Query 24708 GGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCT 24767 |||| ||||| || | ||| |||||| ||| ||| |||||||| ||||| |||| Sbjct 1350 ACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGATCCT 1409 Query 24768 GCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAA 24827 ||| |||||| ||| || | |||||||| ||||| |||| || || || | Sbjct 1410 GCAGATCCCAATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACA 1469 Query 24828 TCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCG 24874 ||||||||||||| ||| |||||||||| || |||| |||| Sbjct 1470 GGCTCTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCG 1516 Score = 109 bits (120), Expect = 1e-19 Identities = 241/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 23321 TTCGGCCAGGGAGAAGGCGGCCATATCGTGCGGCGTCCAGCCAAACACCGTCGCGATATC 23380 |||| ||| || || || |||| || ||||| |||| || | | |||||| || Sbjct 2 TTCGTGCAGCGACCAGCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTC 61 Query 23381 GGCCATCGCGTCTTCTACGCGGGCCGGGACTCCATGCTCGCTTTCAGCGCCTTCGGCATC 23440 ||||||||| || ||||||| | | || | ||| ||| | | | | |||||||||| Sbjct 62 GGCCATCGCATCCTCTACGCAGTCGGGAAATCC--GCTTCCCT-CTGGGCCTTCGGCAAG 118 Query 23441 AAAAAA-CCGGCGAAGATACCCCCCAAC-GCCACGAGGTCGGCCGGGTCCATGCCGGCCA 23498 |||||| || || | | | || || |||| ||||||||||| ||||| | | Sbjct 119 AAAAAAACCTGC--ACCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGA 176 Query 23499 CGTCGAACTCGGTCAGCGTCGGCGTGCTGATGCGCGGCAACA-CCTTGCGCAGCGCGTCG 23557 ||||| ||||||||| |||| | ||||| |||| || |||| ||||||| | Sbjct 177 CGTCGGCGGTGGTCAGCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGC-CAGCGCGGTG 235 Query 23558 ACATCGAGATTCACGAGTGCGGCGAGCGACGTGCCGCGCAGCGCGCCCGCGGCCGGCTTG 23617 ||||| || | || | ||| |||| ||||||||| |||| ||| | |||||| Sbjct 236 ACATCCAGCTGCAGCACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTG 295 Query 23618 CGCAACGTCACCTGCGTGATGGTCTGCCCTTCGCGCTCGATCGGTGTGTCGAG 23670 || | | | | | |||||||||||| | ||||| ||| || |||||| Sbjct 296 CGGACCTTGAGGTCGGTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAG 348 >seq6336 Length=1727 Score = 230 bits (254), Expect = 5e-56 Identities = 275/364 (76%), Gaps = 12/364 (3%) Strand=Plus/Plus Query 3470 CCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATA 3529 ||| ||||| || || |||||||| ||| ||||||||||| |||||||||||||||| Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420 Query 3530 CTTTTGGGT-TCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACA 3588 ||| ||| | || |||| ||| |||||||||||||| ||||||||||||||||| Sbjct 1421 CTTCTGGACCTACGG-GTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACA 1479 Query 3589 AGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGT 3648 || ||||||||||| ||||||||||| || || ||| | | |||||||| ||| ||| Sbjct 1480 AGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGT 1539 Query 3649 TCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG-AGCGCATCCAGATCGA- 3706 | |||| ||||| || | || | | || | |||| |||| |||| ||||||||||| Sbjct 1540 TTTGGACCGGCGAGCGC-CGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGAT 1598 Query 3707 --CACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGA-CGCGCAGTGGCGGCA 3763 | || ||||| ||||| | |||| ||| |||| ||||| |||||||| Sbjct 1599 GTCTCG---CACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGC-CTGGCGGCA 1654 Query 3764 GATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCT 3823 |||||| | | | ||||| || | | ||||||||||||||||| ||||||||||| Sbjct 1655 GATCGTCAACATCCTCGACGCCCAGCGCCGTGGCTGCGACCTGTTCGATATCGACGAGCT 1714 Query 3824 GCGC 3827 |||| Sbjct 1715 GCGC 1718 Score = 123 bits (136), Expect = 6e-24 Identities = 298/444 (67%), Gaps = 18/444 (4%) Strand=Plus/Plus Query 2933 CGTCGAGCGCATCGAGGCATCGCTCGAAGTACGCCTGATGGTGTTGATCGCGAAGGAGAA 2992 ||| |||||||||| | | ||||||| ||| || | ||| |||| |||| | | Sbjct 926 CGTTGAGCGCATCGGTGGCGCACTCGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGA 985 Query 2993 GAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 3052 ||| ||||| || | ||||||||| || ||||| || || | ||||| | || Sbjct 986 AAAGTCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGC 1045 Query 3053 GCGCGT---GCGCAAGTACGACGAGACGGGG--AAGGAATCGGACCTGAACCCGAAGATT 3107 |||| | |||| ||| | || ||| | || ||| | || ||||| ||| | Sbjct 1046 GCGCATCCAGCGC---TACCA--AGGCGGCGGCAACGAAGCCGATCTGAATCCGGCTGTC 1100 Query 3108 GCGTCGCGCAACGCCGGCCC---GAAACGCCGTGCGCCGCGCAACGAAATCAGCGACGAG 3164 || |||||||| | || |||| | | ||||||||| ||| || || Sbjct 1101 GCCAATCGCAACGCTGCGCCAAAGAAAAAAC---CCAAGCGCAACGACTTCACTGAAGAA 1157 Query 3165 CAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTG-TTCGACTATCAGAAAGTCTG 3223 ||| | ||| | | | |||||| ||| |||| |||||||| ||| | || Sbjct 1158 CAGGTCGAGCAGCTGACCACCGCGTTCGTCGACG-GCTGCTTCGACTACCAGCGCGATTG 1216 Query 3224 GTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGAC 3283 ||| ||| |||| | ||||||| |||| |||||| || ||||| ||||||||||| || Sbjct 1217 GTACCGGGCCGGCAACGAGCGCACCCGCATCATCCTCAAGTCGCGCCAGATCGGTGCAAC 1276 Query 3284 GTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTT 3343 || |||||||| ||||| ||||| |||| || ||| ||||| || ||||| || || Sbjct 1277 GTTTTACTTCGCTCGCGAAGCGCTGATCGATGCGCTCACCACCGGGCGCAATCAGATTTT 1336 Query 3344 CCTGTCGGCGAGCAAGGCTCAGGC 3367 | || || |||||| ||||| Sbjct 1337 CTTGAGCGCCTCCAAGGCGCAGGC 1360 Score = 86.0 bits (94), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 2212 GGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCGACGAGATACGCCTCGCCGAT 2271 |||||| ||||| ||||| |||||| |||| || |||||||||||||||| |||| | Sbjct 209 GGTGCCCAGGCTGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGT 268 Query 2272 GTCGGCGAAGTCGGGGTTGATTTCGATCGACGTGAAGAGCTTCTGGCGCTT---CTTCGA 2328 || |||||| | | | ||||| ||| ||||||||| |||| ||| Sbjct 269 GTTGGCGAATTTCTCCTGCACCTCGATGCTGGTGTAGAGCTTCT---GCTTGGACTTGTT 325 Query 2329 CAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGCGCCA 2375 | | || || ||| ||||||| |||||||| ||| ||||||||| Sbjct 326 GATGGTGATCAGGTCGGCGGTCGGCTCGATCTGGGCAAACAGCGCCA 372 >seq6999 Length=1567 Score = 118 bits (130), Expect = 2e-22 Identities = 507/779 (65%), Gaps = 32/779 (4%) Strand=Plus/Plus Query 18826 TTTCGAGCTCGAGCGCGGTCGTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTC- 18884 |||| |||| ||||| ||| ||||||| || | || || |||||| ||||| || | Sbjct 487 TTTCAAGCTTGAGCGATGTCTTGAATCCGTCGCCCCCAATAGTGTGCAGTGTCT-CTCCG 545 Query 18885 ACGAGCCACGGCGTCTCGT--CGATTTCCGGTTTGAAGCCTGATACGGTCACGGGCATCT 18942 | ||||| |||| ||| |||| || || || || || | ||||| ||| || Sbjct 546 ATAAGCCA--GCGTTGCGTATCGATCTCAGGCTTTAAACCGCTAAACGTCACCCGCAGCT 603 Query 18943 CCGGGAACAGTTCGGCGCGGCCGCGCGCGAGCGTGTAGCTC-ATCGTCGCCTGGCTGCGC 19001 | || || | || || |||||| | || | |||||| ||| | | ||||| || ||| Sbjct 604 CGGGAAAGACATCCGCCCGGCCGAGAGCCAACGTGTA-CTCGAACTTCGCCACGCCGCGT 662 Query 19002 TGCATCCGCTTGAACTCCGCTTGCGCGGCCGCGCGCGCTTCCGCCTCCGTTGCGTAATCT 19061 | || ||||| | |||||| ||||| | ||| || ||||| || || Sbjct 663 TTCACCCGCTCCAGCTCCGCATGCGCATGCTGGCGTGCCGTTGCCTCATCGGCATACGAC 722 Query 19062 TCCGGCAGCACCTTCACGTTCTTGTTGTTCTCACCGCCGACGATGACCGACTTGCGCTTC 19121 || |||| ||| |||| | || || |||||| | ||||||| ||| Sbjct 723 TCGCGCAGGCGCTTGGCGTTGTCGTCTTT------GCCGACCAGCACCGACTGCCGCCGT 776 Query 19122 GCGCGGCCG--GTCGAATGGTAGTGCGCGCGCACGGCCGCGTAGTTCTCGCGTTCGGACA 19179 || ||| ||| | ||| |||||||||| | | |||| ||||| |||| | Sbjct 777 GCCTTGCCTTTGTCCACCC--AGTACGCGCGCACGCCGGTGTAGGCATCGCGGTCGGCAA 834 Query 19180 CGTGGTAACGATGACTGTCGCCGCTCGCGC-GCGTCAGTTCGAGCATGTCG--AGCTGCT 19236 || |||||| || |||||| |||||| ||||||| || || |||| ||| | | Sbjct 835 CGGAGTAACGGTGTTGGTCGCCT-TCGCGCCGCGTCAGGGTGA-CA-GTCGGCAGCGGTT 891 Query 19237 TTCCGCTCGCCGTCTGGCCGGTGCCGATCGGCATGAACAGCAAGCGTAGATCCTTCACGT 19296 | ||| |||| || ||||| |||||||||| |||| ||| | |||| || Sbjct 892 TGCCGGTCGCTGTGGTGCCGGCGCCGATCGGCGCAAACACCAATGCTCCTGCCTTGACCG 951 Query 19297 TCATGACGGCGTCGTAGCGCTTCGCCAGACGCGTCAGAAACGACATGTCCGATTCGTGCG 19356 | ||| || ||| |||||| |||| ||||| || | ||| || |||| | Sbjct 952 TGGCGACCGCATCGAAGCGCTGGCCCAGGCGCGTGAGCAGATTCATATCGCTCTCGTTGG 1011 Query 19357 TCTGGTCGATGTGCGCGATC--AGGACCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAG 19414 |||||||| || | | | || | | || ||||| || | ||| ||| | ||| Sbjct 1012 CCTGGTCGAGATGGGGCAACTTAGTGCGT--GCCAGCGCCTCCGCCACGCGCGGGGTCAG 1069 Query 19415 CGAGTAGCGC-CCGGCGATCGCGTGGACGATCGAGCCGATCGTC-TGTCGATGCCAGCTC 19472 | || | ||||| | | | || | | ||| | ||| ||| | |||||||| Sbjct 1070 TCCAT-GCTCGCCGGCCAGGGTATTGAGCACGGCGCCCAACGTGGTGTTG-TGCCAGCTG 1127 Query 19473 TTCTCGCGGCGCTCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGACG 19532 |||||| ||| ||||| | |||| | || |||||||| | ||||| | Sbjct 1128 CGCTCGCGCCGCGTGCGCATGTCTGCAGTCAGATCCGCACTACGCGCGCGCACGGTGATG 1187 Query 19533 ATGTCCGGCGCGCCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGAG 19591 ||||| ||||||||||||| ||| || |||| ||| | |||| |||| |||||||| || Sbjct 1188 ATGTCGGGCGCGCCGCTGTACTCCACCTCGTCCACGATGAAGGTGCCTTTGTCGACCAG 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117269566909264