Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq6992 421 2e-113 seq6336 178 3e-40 seq6999 95.1 3e-15 seq8228 84.2 5e-12 >seq6992 Length=1569 Score = 421 bits (466), Expect = 2e-113 Identities = 953/1420 (67%), Gaps = 61/1420 (4%) Strand=Plus/Minus Query 19471 GCCACGGCCCGCGCGGTCGGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGCACAAG 19530 ||||| || || ||| ||||| |||| ||||||||||||| ||| |||||||||||| Sbjct 1533 GCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAGGGCTGGCACAAG 1474 Query 19531 ACGCTTTCCAACGTGGCGGTGGGCGGCGTGACCGGTCTGTCGCGCGACGTGTTCTGGGAC 19590 | || ||||||||| | |||| ||||| ||||| | || || ||| ||||| Sbjct 1473 AGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGTGCATTGGGAT 1414 Query 19591 CTTCAGGACCCGGCGACCGACGCGGGCTACCTGAACGCCAACGAGGTGACCACGCTGGTT 19650 || ||||| ||||| ||||| || ||| ||| |||| ||| | ||||||||||| Sbjct 1413 CTGCAGGATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCACCACGCTGGTG 1354 Query 19651 CACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGTGCGGATCCGCTGTTCGCC 19710 | ||||| | ||||||||||| |||||||||||| | ||| |||||||| Sbjct 1353 ACGTTCAACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAGGACAACATGTTCGCC 1294 Query 19711 TTCGAGAACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCGGAAGCACACATG 19770 ||||||| ||| |||||||||||| | |||||||||||||| || |||| | || Sbjct 1293 TTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATCGCCGAAGG---CGTG 1237 Query 19771 TGGGCGAACG---ACCTACCGATGACGCCCACCCTCGTGCGCGATCTGCTGGAGGGCATC 19827 | ||| || ||||||| ||| | || || | |||||| | || ||| Sbjct 1236 GCGTTCTACGTCGACAAACCGATGCACCCCTCGCTGGTCAGGGATCTGATCGAAACGATC 1177 Query 19828 AATGCCAAGTTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGGCGCCGCGTGGTTC 19887 || |||||||| ||| |||| || ||| || | | | | ||| |||| | Sbjct 1176 AACGCCAAGTTCCGCGACCTGAAGTCGTCGGGCTACTTGATCGATGCCAACGCCTGGTAC 1117 Query 19888 GACGCGGACGCCAACAGCAAGGACACGCTGAAGGCCG--GGCAACTCGC-CATCGACTAC 19944 |||| | ||||||| |||||| |||| ||| || |||||| ||| Sbjct 1116 GACGGCATGGTCAACAGCGCCACCACGCTC---GCCGATGGCGCGCTGCGCATCGATTAC 1060 Query 19945 GACTACACGCCCGTCCCACCTCTGGAGAACCTCACGTTCCGCCAGCGCATCACCGACCGC 20004 ||||||||||| || ||||| ||||||||| | | | | || |||||| | || Sbjct 1059 GACTACACGCCGGTGCCACCGCTGGAGAACTTGCAGCTGTACAAGAAGATCACCACCAGC 1000 Query 20005 TACCTGATGCAGTTCGCCGAAGCCGTCAAGGCGGCTTGAGCTGTGTCCCACCACCTGA-- 20062 |||||| | ||||||||| |||||| ||| | || ||| || | || Sbjct 999 TACCTGGCCGACTTCGCCGAACGCGTCAACGCG--TAACGCA----CCCGCCTCA-GATT 947 Query 20063 CCAGGA-ATCACTATGGCTCTGCCACGCATCCTCAA-GCACTTCAACGTTTTCGCGGACG 20120 || ||| | | | |||||| |||| | ||||| || || |||| | ||| |||| Sbjct 946 CCCGGAGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGCT-CAACCTGTTCAACGACG 888 Query 20121 GTGTGGTCCACACCGGCGAATGCGAAGAAATCAACCTGCCCAAGCTCGCGCGCAAGCTGG 20180 ||| | | | |||| | | ||| | || ||||||| ||| | |||||| ||| Sbjct 887 GTGAGAGCTATCTCGGCCAGGTGGTCGAAGTGAAGCTGCCCACGCTGTCCCGCAAGATGG 828 Query 20181 AGGAATACCGCGCCGGCGGCATGAACGGCGCCATCCAGATCGACATGGGCAACGAGAAGC 20240 |||| || |||| |||||| ||||| ||| | || | |||||| | ||| | |||||| Sbjct 827 AGGAGTATCGCGGCGGCGGTATGAATGGCCCGGTCGACATCGACTTCGGCCAGGAGAAGA 768 Query 20241 TGGAGCTGGAAACCACCTACGGCGGCCCGATGCGCGAAATCCTCAAGCAGTACGGCACCA 20300 | ||||| ||| | | |||||||| ||||||| | || || ||||||||| ||| Sbjct 767 TCGAGCTCGAATGGAAGTGCGGCGGCCTGATGCGCAGCGTACTGAATCAGTACGGCGCCA 708 Query 20301 CCGCCGTCGATGGCGCCATGATCCGCTTCGCCGGCGCCTACCAGCACGAGGACACCAAGG 20360 || | | | | || | | ||||| |||||||||||||||| ||| || ||| | Sbjct 707 CCACGCACAACGCCGTGCAGCTGCGCTTTGCCGGCGCCTACCAGCGCGACGATTCCACCG 648 Query 20361 AAGTCGATGCGGTGGAGATCGTCGTGCGCGGCCGGCATACCGAAATTGATTTCGGCACCG 20420 | || ||||||||||| || || ||||||||||| || | || |||||| ||| |||| Sbjct 647 AGGTGGATGCGGTGGAAATTGTTGTGCGCGGCCGTCACAAGGAGATTGATCCCGGTACCG 588 Query 20421 CCAAGGCCGGCGCCAAAGCCCCGTTCAAGGTCAAGTCCTCGCTGACCTACTACAAGATGA 20480 |||| |||||| | || ||| ||||||| | ||| | |||||||||| ||| Sbjct 587 GCAAGTCCGGCGATGACACCGAGTTTTCGGTCAAGACGTCGGCCAGCTACTACAAGCTGA 528 Query 20481 CCGTCAACGGCGAAGTCTGGTGCGAGCTGGATTTCGTGAACTTCGTCGAAGTCGTTTTCG 20540 ||||||||| | |||| | ||||| ||||| | |||| |||| || Sbjct 527 GTATCAACGGCGTGCCCGTAATCGAGATCGATTTGATGAACATGATCGAGATCGTCAACG 468 Query 20541 GCGAGGACCGCCTGGCCGCGCAGCGCCGTGCGATCG--GCCTGTAACCCGGGCGACGCCC 20598 ||| ||| | || ||| | || ||||| || |||| ||||| |||| || Sbjct 467 GCGTGGATCTGCTTGCCCCTCACCGCCGCGCCATCGGTGCCTG--ACCC------TTCCG 416 Query 20599 ACCTCGCCCGGGCGGGCTGACCTGCGCGGGCATGCCTCAACTCTTCATCGCTTTGACC-- 20656 ||| || | | |||| ||| ||| | | | |||| | ||||| Sbjct 415 GCCTGGCGCCGCCGGG----CCTCCGC-------CTTGAGACCTTC----CGATGACCCC 371 Query 20657 -ACCATGGaaaaaaaaaCCGCAACCATCACCTTGGACACCCCGATCACGCGCGGGGAACA 20715 ||| | || || |||| || | ||| || ||||||||||| || || Sbjct 370 GACCTT---------TTCCCCAGCCATTCCCCTCGACCAGCCCATCACGCGCGGCGAGCA 320 Query 20716 GACGATCAGCGAGATCACCGTGCGCAAGCCGGGCGCCGGCGAGCTGCGCGGCGTGAGCCT 20775 ||| |||| ||| ||| || |||||||| ||||| ||||| ||||||||| | | || Sbjct 319 GACCATCACCGACCTCAAGGTCCGCAAGCCCGGCGCAGGCGAACTGCGCGGCCTCAAGCT 260 Query 20776 GATGGACCTGATGCGCATGGACGTGACTGCCCTGCACACGGTTCTGCCGCGCATCACCAC 20835 | ||| || ||| |||| || || || ||| || | ||||| ||||| || | Sbjct 259 CACCGACGTGCTGCAGCTGGATGTCACCGCGCTGGCAACACTGCTGCCTCGCATTTCCTC 200 Query 20836 GCCGACGCTGACCACCGCCGATGTGAGCAAGCTGGATCCG 20875 ||| ||||||||||||||||| || | | |||||||| Sbjct 199 GCCCACGCTGACCACCGCCGACGTCAATGCGATGGATCCG 160 >seq6336 Length=1727 Score = 178 bits (196), Expect = 3e-40 Identities = 341/495 (69%), Gaps = 21/495 (4%) Strand=Plus/Minus Query 5170 GCCTGCGCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATG 5229 |||||||||||| ||| | ||||||||| ||||| |||||||| ||||| ||||| Sbjct 1360 GCCTGCGCCTTGGAGGCGCTCAAGAAAATCTGATTGCGCCCGGTGGTGAGCGCATCGATC 1301 Query 5230 AACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGG 5289 | ||| ||||| |||||||| |||| || |||||||| || |||||| | | ||||| Sbjct 1300 AGCGCTTCGCGAGCGAAGTAAAACGTTGCACCGATCTGGCGCGACTTGAGGATGATGCGG 1241 Query 5290 ATGCGCTCGACCTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAA-CATCGAGTCGCG 5348 |||||||| | || ||| |||||| |||||||||| ||||| || | |||| Sbjct 1240 GTGCGCTCG---TTGCCGGCCCGGTACCAATCGCGCTGGTAGTCGAAGCAGC-CGTCGAC 1185 Query 5349 GAA---GGCCTCCAGGAGCTGCGTCTGTTCCTCGGGACTGATCGCATTGCGCTCGGGCTT 5405 ||| || ||| ||| |||||| || | ||| | ||||||| ||| || Sbjct 1184 GAACGCGGTGGTCAGCTGCTCGACCTGTTCTTC---AGTGAAGTCGTTGCGCTTGGGTTT 1128 Query 5406 GCTGCGCGGCCCCTTGTTGCGGTTCGCCACCTTCGGGTTCAGGTCGGTTTCGTTGCCGCT 5465 | ||| | |||||| || || || ||| ||||| |||| ||||||||||| Sbjct 1127 TTTCTTTGGCGCAGCGTTGCGATTGGCGACAGCCGGATTCAGATCGGCTTCGTTGCCGCC 1068 Query 5466 GGCCTCGTACCGGCGCACGCGCGCCATGCGCTCCATTTGTCGGCCAAGCAGGTCGATTTC 5525 | | | ||| || | | ||||||| |||||||| || || ||||| || ||||| Sbjct 1067 GCCTTGGTAGCGCTGGATGCGCGCCTGGCGCTCCAACTGCCGATGCAGCAGATCAATTTC 1008 Query 5526 CTTGTAGTCCCGGCCTTCCTTCACCTCCTTGGCGACGAGCTGCGCCATGCGCTCTTCGAT 5585 |||| | || | ||| ||| || ||| | ||| ||| |||| |||||| Sbjct 1007 CTTGAAATCGCCGCCGGACTTTTCCGGCTTCATAATCAGCACAACCAAGCGCGCTTCGA- 949 Query 5586 GCTGTTCGCCAC----GCGCTCCACTGCATCCGCCGCG-TCCCACCCATCGCGCCGCTTC 5640 || |||||| |||||| || || | |||| |||||| | || ||| |||| Sbjct 948 ---GTGCGCCACCGATGCGCTCAACGTTGTCTG-CGCGATCCCACTCGTCACGCGACTTC 893 Query 5641 CAGCTGTGCACCGTC 5655 |||||||| || ||| Sbjct 892 CAGCTGTGTACAGTC 878 Score = 159 bits (176), Expect = 9e-35 Identities = 255/366 (70%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 4701 GTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTC 4760 ||| ||| |||||||| ||||| |||||||||| |||||| | ||| | || || Sbjct 1727 GTATTCCTCGCGCAGCTCGTCGATATCGAACAGGTCGCAGCCACGGCGCTGGGCGTCGAG 1668 Query 4761 CACCGTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGC 4820 | | ||||| || ||||| || |||| |||||| ||| || |||||| | Sbjct 1667 GATGTTGACGATCTGCCGCCAGGCGCGGTCCTGGCAGCGGCGACCGCCGGCCAGCGCGTC 1608 Query 4821 GTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCC 4880 ||| | |||| || |||| | | || | |||||| |||| | |||| Sbjct 1607 GTGCGAGACATCGATCTGGATCCGCTGCGCCGCCGGCTTGCCCTTGTTGCGGCGCTCGCC 1548 Query 4881 GGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACG 4940 || ||| |||| |||||||| || | || ||| || || ||| ||||||||||| || Sbjct 1547 GGTCCAAAACGTGTAGGCCTCGTGGGCCATGCTCGATGGTGTGCTGAAGTAGGTCTTGCG 1488 Query 4941 CCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCAC 5000 ||| | |||||| |||||||||||| |||||||||| || ||| | ||| | Sbjct 1487 CCACTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAATTCGTTGAACCCGTAGGT 1428 Query 5001 CCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCGT 5060 ||||||| |||| |||||||| | |||||||| || ||| |||||||| || || || Sbjct 1427 CCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTGCGTGCATTGGT 1368 Query 5061 GCCGAG 5066 ||||| Sbjct 1367 CCCGAG 1362 >seq6999 Length=1567 Score = 95.1 bits (104), Expect = 3e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24328 ACGACAGCGACGGCCGGCTGGAGCTGCCCGAGAAAGGGGTACGCCTGGCGCTGTCGATCG 24387 ||||| ||||||| | ||| ||||||| | || || ||||| || || || | | Sbjct 1323 ACGACCACGACGGCAAGATGGCGCTGCCCAAACGCGGCGTGCGCCTAGCTGTGGCGCTGG 1264 Query 24388 GGTGGGCGGATACCGGCGTGGTAAGCAAAGGCACGTTCAAGGTGGACGAGCTGGAGCACA 24447 | ||| | |||||| |||| ||||||||| |||| ||||||||| ||||| ||| Sbjct 1263 GCTGGAAAGCCACCGGCCTGGTCGACAAAGGCACCTTCATCGTGGACGAGGTGGAGTACA 1204 Query 24448 CCGGCCCGCCGGATCGCCTCACGATCCGCGCGCGTAGTGTGGAGCTG 24494 |||| |||| || | |||| | ||||||||||||| ||| ||| Sbjct 1203 GCGGCGCGCCCGACATCATCACCGTGCGCGCGCGTAGTGCGGATCTG 1157 >seq8228 Length=1342 Score = 84.2 bits (92), Expect = 5e-12 Identities = 381/594 (64%), Gaps = 39/594 (7%) Strand=Plus/Minus Query 8769 CATGCGCCTGGACGGCACCGTCACGCCCGAACGCCTGCGCGCTGCGCTGGTCGACGCCGC 8828 ||||||| |||| |||||||| || | || |||||| || || ||| |||| Sbjct 1144 CATGCGCTTGGATGGCACCGTGACCGATGCGCGTCTGCGCCACGCCCTCATCGCCGCCAT 1085 Query 8829 GCTGTCCGTCAACGATGAACTGGCGGCATGGA---AGGCGCAGCAGCTTGCCGCCGGATT 8885 |||| | ||||||||||| || | ||||| || |||||||| || || || | Sbjct 1084 GCTGGCGGTCAACGATGAGTTGCAGACATGGGCGCAGACGCAGCAG---GCGGCTGGCTA 1028 Query 8886 CACGGAGCTGGGCGCAGTGCCGGGG--CAGTGGATCGATGGCAGAAGCCGCCACGTGCAC 8943 | ||| | || || ||||| | || || |||||||| |||| ||| || Sbjct 1027 CGCGGTGTTGACCGATGTGCCCAGCACCACTG--TCGATGGCCTCTCGCGCCGCGTACAG 970 Query 8944 CGCTACCTGCGCGCGGTCCACTGCACGGCGGCGGCCTGGCTGATGGAGCGGTACCGGTCG 9003 | ||||| ||||| ||| || | | || | | | || ||||| ||||| Sbjct 969 CTGTACCTACGCGCCGTCGCGTGTGCCACCGCTGTCGAGGTGGCAGAGCGTTACCGCAGC 910 Query 9004 TTCGACGCCACCGCCGCGGGGGACCGCAAGGCCGAG-GCGGAAAACACATCG--GTGGAT 9060 ||||||||||| | | | ||| | | | | || || || || | | || Sbjct 909 TTCGACGCCACTGAC-------AGCGCCAACCAGCGCGCCGATGACCTGTCACCGAGCAT 857 Query 9061 ----GATCTGCGCCGCGATGCGCGCTGGGCAGTCAGCGA----CATCACCGGCGCTGCGC 9112 || || |||||||| ||||||||| || |||| || ||| || ||| Sbjct 856 CACCGAGCTACGCCGCGACCAGCGCTGGGCCGTGCGCGATCTGCAGAACCTGC----CGC 801 Query 9113 GCACCACCGTGGAGCTGATCTGATGCGCGTGCGGGCGATCCAGGGCGACACCATCGACGC 9172 ||| ||| |||||||| ||||||||||||||| || || || ||||||||| ||||| Sbjct 800 GCAGCACGGTGGAGCTCATCTGATGCGCGTGCATGCCATGCAAGGCGACACCGTCGACCT 741 Query 9173 CATCTGCCGGCGGGTCTACGGCCGCACGGCGAGCGTGACGGAAGCCGTGCTGGC-CGCCA 9231 | ||| |||| | ||| ||||||| || || | ||| || | | || Sbjct 740 GCTGTGCTGGCGCCACCTGGGCAGCACGGCCGGCCTGGTCG-AGCGCACCTATCTCCTCA 682 Query 9232 ACCCCGGCATCGCCGACTTGGGTCCCATCCTGCCGCACGGGACCGAGCTGGTACTGCCCG 9291 | |||||| | ||||| |||| || | || ||||| || || | ||| |||||| Sbjct 681 ATCCCGGCCTGGCCGAACTGGGCGCCGTGCTACCGCATGGCACGCCGGTGGAGTTGCCCG 622 Query 9292 ACATTTCC----CCGCAGCGGCAGGCCGCGCAGACGGTGCAGCTGTGGGACTGA 9341 | | || || ||||||| | ||| | |||||||| ||||||||| Sbjct 621 AGGTAACCACCACCACAGCGGC-GATGACGCCGCTTGTGCAGCTATGGGACTGA 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123892616224504