Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2192 93.3 3e-14 seq151 93.3 3e-14 >seq2192 Length=7014 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 37875 GGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGAT 37934 || ||||||||| ||||| || ||||| ||| |||||| ||||||||||| | | Sbjct 6674 GGCAAGATGCATGGCTATATACGTATGTACTGGGCGAAGAAACTTTTGGAATGGACCAAA 6615 Query 37935 GATGCTCAGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTAC-AGCTTGGACGG 37993 | | || ||| || | || || |||||||||||||| ||| |||| | | || Sbjct 6614 ACTCCGGAGGTCGCCCTTCGCATCGGGATATATCTCAATGATAAATACGAGCTAG-ATGG 6556 Query 37994 GCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGC 38053 || |||||||| || || || |||| ||||||||| | || | ||||||||||| Sbjct 6555 TCGGGATCCCAATGGATATGTGGGCTTAGCATGGTCTATAGGAGGCGTGCACGATAGAGC 6496 Query 38054 CTG----GCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATGT 38108 || | ||| ||| | | ||| || || || |||||||| |||||||||| Sbjct 6495 TTGGTTTGAGCGGGAT----GTATTCGGAAAAATCCGCTACATGAATGCCAACGGATGT 6441 >seq151 Length=51439 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || ||||| ||||||||| |||||||| || || Sbjct 38274 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 38332 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| |||||||||||||| ||||| |||||||| || ||| Sbjct 38333 CAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38392 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 38393 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 38422 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || ||||| ||||||||| |||||||| || | Sbjct 38046 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 38105 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| |||||||||||||| ||||| |||||||| || ||| Sbjct 38106 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38165 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 38166 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 38194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397003913452972