Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq2192 93.3 3e-14
seq151 93.3 3e-14
>seq2192
Length=7014
Score = 93.3 bits (102), Expect = 3e-14
Identities = 166/239 (69%), Gaps = 10/239 (4%)
Strand=Plus/Minus
Query 37875 GGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGAT 37934
|| ||||||||| ||||| || ||||| ||| |||||| ||||||||||| | |
Sbjct 6674 GGCAAGATGCATGGCTATATACGTATGTACTGGGCGAAGAAACTTTTGGAATGGACCAAA 6615
Query 37935 GATGCTCAGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTAC-AGCTTGGACGG 37993
| | || ||| || | || || |||||||||||||| ||| |||| | | ||
Sbjct 6614 ACTCCGGAGGTCGCCCTTCGCATCGGGATATATCTCAATGATAAATACGAGCTAG-ATGG 6556
Query 37994 GCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGC 38053
|| |||||||| || || || |||| ||||||||| | || | |||||||||||
Sbjct 6555 TCGGGATCCCAATGGATATGTGGGCTTAGCATGGTCTATAGGAGGCGTGCACGATAGAGC 6496
Query 38054 CTG----GCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATGT 38108
|| | ||| ||| | | ||| || || || |||||||| ||||||||||
Sbjct 6495 TTGGTTTGAGCGGGAT----GTATTCGGAAAAATCCGCTACATGAATGCCAACGGATGT 6441
>seq151
Length=51439
Score = 93.3 bits (102), Expect = 3e-14
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || ||||| ||||||||| |||||||| || ||
Sbjct 38274 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 38332
Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| || || |||| |||| |||||||||||||| ||||| |||||||| || |||
Sbjct 38333 CAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38392
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049
| || ||| |||||| || || |||||
Sbjct 38393 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 38422
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || ||||| ||||||||| |||||||| || |
Sbjct 38046 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 38105
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || |||| |||| |||||||||||||| ||||| |||||||| || |||
Sbjct 38106 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38165
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049
| || ||| |||||| || || |||||
Sbjct 38166 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 38194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397003913452972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |