Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq151 136 9e-27 seq1324 129 1e-24 seq7203 89.7 1e-12 seq3759 89.7 1e-12 >seq151 Length=51439 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | ||| || || || | ||| || || ||||| || |||| Sbjct 38270 CATG-CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 38328 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| |||||||| | || || || || |||||||| ||||| || | Sbjct 38329 CGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAG 38388 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| ||| ||||| || || || || || || | Sbjct 38389 GCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCT 38448 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||||||||||||||| |||| ||||| ||||| |||||||| Sbjct 38449 CCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38500 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || || | ||| || || ||||| || ||||| Sbjct 38046 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 38105 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | || || || || |||||||| ||||| || | ||| Sbjct 38106 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38165 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| ||||| || || || || || || || || Sbjct 38166 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACG 38225 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| |||| ||||| ||||| |||||||| Sbjct 38226 TCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 >seq1324 Length=13147 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | ||||||||| |||||||| | ||| || || || |||||| Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | || || ||||| |||||||| || ||| ||||| || || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2225 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||||||||| || |||| ||||| || || Sbjct 2226 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAAG 2285 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 2286 ATCTGCATGAT 2296 >seq7203 Length=1522 Score = 89.7 bits (98), Expect = 1e-12 Identities = 194/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || ||||| || ||||||||| ||| | ||| || | || ||| |||| || Sbjct 903 GATGCAGTAGAAATCGAAAAAGAATTCGTAACTGATGCGCTACCTGTTTCGTTGATTGGC 844 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||||||||| || ||| ||||| || || || ||||| |||| | || || Sbjct 843 ATGAATGCCGAACTAATGTGCCAATACATTGAGTTTGTGGCCGATCACCTTTTGGAATCA 784 Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277 | || | | ||| | || ||| ||| ||||| |||| || ||||| | |||||| Sbjct 783 TTAGGAGTTAATAAAATTTATAATGCGACCAATCCTTTCGATTTCATGGATATGATTTCG 724 Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTA 269337 | |||| || || || ||||||||||| ||||| | || || ||| | ||||| Sbjct 723 TTACAAGGCAAAACCAATTTCTTCGAAAAACGTGTAGGTGAATACCAAAAAGCGGGTGTT 664 Query 269338 ATGAATCCAGAAGACAATAT---TTTTGCCATCGATGATGATTTTTAAGA 269384 ||| || |||| | || ||| | ||||||| || |||||||| Sbjct 663 ATGTCTCAGAAAGAGCAAATGTCTTTCTCGCTCGATGAAGAATTTTAAGA 614 >seq3759 Length=3256 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/221 (70%), Gaps = 16/221 (7%) Strand=Plus/Plus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGT-TCTATGATCGGTATGAATGCCGATCT 269171 ||||||||||| || ||||| ||| | || ||| | | ||||| ||||| | || | Sbjct 148 GAAAAAGAGTTTATCTGTGAAGCTTTGCC-TGTGAATCTCATCGGAATGAACTCTGACTT 206 Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGC--ACTCGGTTATGA- 269228 ||| |||||||||||| | ||||| ||| | || ||| | |||||| || Sbjct 207 GATGGCTCAATATATCGAGTATGTGGCGGAT----TTTT---GGCTTAGTCGGTTGGGAC 259 Query 269229 ----GAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAG 269284 || ||||| || || ||||||| || | ||||||| || | ||||| ||| | Sbjct 260 TACCAAAGGTGTATAACACGCAGAATCCTTTTGACTTTATGCAAATGATTTCACTCTCCG 319 Query 269285 GAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 | ||||| |||||||| || || ||||| | ||||||||| Sbjct 320 GGAAGACAAACTTCTTTGAGAAACGTGTAGGAGACTATCAA 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179471728304308