Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq732 129 1e-24 seq91 118 2e-21 seq3 89.7 1e-12 >seq732 Length=22061 Score = 129 bits (142), Expect = 1e-24 Identities = 540/839 (64%), Gaps = 20/839 (2%) Strand=Plus/Minus Query 242897 TGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTGA 242956 ||||| | ||||| |||||||| | || | || ||||| | ||||| | | || Sbjct 9515 TGTGGCAGATGTACAAGAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGA-GCTAGACTTG 9457 Query 242957 ACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 243015 ||| || || |||||| | ||| |||| ||| | || ||||| || ||||| Sbjct 9456 GTGCACGATCTCAAGGACTGG---GCGAACCTCACGGACAATGAGCGTCACTTTATCAAG 9400 Query 243016 CACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAAC 243075 || | || | || || |||| | ||||| ||||||| || |||||| | ||| Sbjct 9399 CATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAAC 9340 Query 243076 TTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAAC 243135 ||||| ||||| || || || || ||| ||||||| | ||| | | Sbjct 9339 TTTAGCAATGAAGTGCAAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATT 9280 Query 243136 GAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGATGAACAA 243195 ||| ||||| || ||| ||| | || || || ||| || ||| ||| | | | Sbjct 9279 GAAAACATCCACTCGGAAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAGG--CGA 9222 Query 243196 GAGCGAA--ACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAA 243253 | ||| | | ||| | ||| || || | ||| ||| |||| || || || | Sbjct 9221 CGGAGAAGGATCACCTTCTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCA 9162 Query 243254 AATGGGCTCAGAAGTGGCTAGAACCCG--GTAAAT-CATTTGCTGAGCGTCTCGTCGCCT 243310 | ||||| | |||||| || || ||| | | | || ||||| || | || | Sbjct 9161 ATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTACGCGGAGCGGCTGCTGGCAT 9102 Query 243311 GGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGA 243370 | | || ||||| ||| | || || || |||||| | |||||||||||| || Sbjct 9101 TTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGA 9042 Query 243371 ACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCC 243430 | ||| | |||||||||||| | | || |||||| |||| ||||| || |||||| Sbjct 9041 AGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCA 8982 Query 243431 TTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA- 243488 | ||| | || | ||| || ||||| || ||||| ||||||||| || ||| Sbjct 8981 TGCACACGGACTTTGCGTGC-CTCATGTACTCCAAGCTAGTGAACAAGCTGCC---CGAG 8926 Query 243489 -AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGAC 243546 | || ||| | ||||| || ||||| | ||| | || || | | ||| Sbjct 8925 GACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGAC 8866 Query 243547 GCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTC 243606 | | || ||| |||||||||||||| | |||||| | |||||||| || || Sbjct 8865 TCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTT 8806 Query 243607 GTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCC 243666 ||||| |||||| | || | |||| || ||| | | | | | |||||||| Sbjct 8805 GTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAGATTTTCCATGCAAAGAACCCA 8746 Query 243667 TTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 |||| || ||||| | || |||||||| || || || ||||| ||||| |||||||| Sbjct 8745 TTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGT 8687 >seq91 Length=60761 Score = 118 bits (130), Expect = 2e-21 Identities = 408/634 (64%), Gaps = 23/634 (4%) Strand=Plus/Plus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | ||||||||| |||||||| |||||| ||| | | ||||| Sbjct 12011 CTGCTCCACGAATTTGGACAGATTGCCCTTGTAGATCTTCAACTTACGCGTC---TCGTA 12067 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || ||||| ||||| || ||||||||| || |||||||| ||||| || | | Sbjct 12068 GTGAATAATGTTCGTGCAGACCTTGTCGAGGAAACCAGAGTCGTGCGACACCATGATCGA 12127 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 | |||| | ||| | || || | |||||| |||||| ||| | Sbjct 12128 GGTCACGTTAGTCAGGCCAGTGAGATAATTCTCCAGCCAAGCCACGTTCTTGACATCCAA 12187 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 ||||| |||||||| || || || | | | || ||| | ||||| ||||| || || Sbjct 12188 GTGGTTCGTCGGCTCATCGAGCAGCAAGATATCAGCCTTCCGCAGCATAGCACGAGCCAG 12247 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | | |||||| ||||| || || ||||||||| | ||| |||| || || Sbjct 12248 CTCCAATTTCATCTTCCAACCGCCAGAAAGAGTGCCGA------CAGCTTGGGCCTGCAT 12301 Query 334022 ATCA------AAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 334075 ||| ||||| || |||||| ||| || | || | | | Sbjct 12302 CTCATCTGTGAAGCCCACACCAGATAGAGTGTCCTCGACCTCCTTGCGCGG------GGT 12355 Query 334076 TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCC 334135 ||||| | | ||||| ||||| |||| | || || | | || || | Sbjct 12356 GTCCTTGAGGTCCTCATCCACCAGGATGAACTCAACCACAGACAGCTCCGCTTCCGAAGC 12415 Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC-CCTTCAA 334194 | || | ||| ||||| | |||| |||| | || || | |||| || || | Sbjct 12416 CTGCAGGTTGTGCTCCACAAACACAGTCTTCAGCTCGTC-GCGGCTTGGAAATCCCTCCA 12474 Query 334195 GCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACA 334254 ||||||||||| ||| ||||||||||| || || ||||| |||||| || || |||| Sbjct 12475 GCTGACCGTTCGAAATGGCGCGCATCAGCGTCGACTTACCACACCCGTTGGGACCGCACA 12534 Query 334255 GACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCAC 334314 ||||||| |||| |||||||| ||| || || | |||||||| | || | |||| Sbjct 12535 GACCGTAACGGTGACCACGCTTAAGACGGAGACGAGCATTGTTCAACAAGATCATACCAC 12594 Query 334315 CATATGCCAGAGAAAATTCACAATCACACAGATC 334348 | || || || || || ||||| | ||| || || Sbjct 12595 CGTAAGCAAGCGAGAACTCACAGTTACAGAGGTC 12628 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||||||||| || ||||||| ||||| |||||||| | ||| || || Sbjct 11603 CTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTTGCAGTCTCATCGAG 11662 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||||||||| ||||||||||| | |||||| || || Sbjct 11663 GTGCGACTCAATGTGGTGGAAAGCATGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTG 11722 Query 333434 CTTCCA 333439 |||||| Sbjct 11723 CTTCCA 11728 >seq3 Length=134081 Score = 89.7 bits (98), Expect = 1e-12 Identities = 256/391 (65%), Gaps = 2/391 (1%) Strand=Plus/Plus Query 297244 GATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGA 297303 ||||||| ||| ||||| | || | | | | |||||||| || || || || | Sbjct 53780 GATGTCTAGTGGGTTGTACGTCGGAACAGAACTGGACCAACCTGTTCCAATGCCGTCAGT 53839 Query 297304 ACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACC 297363 || || || || | | || || | || | || |||| || |||||| | ||| Sbjct 53840 GCCGTTGACGAGCACCATGGGGATGATCGGAATGTACCACTCCGGCTCGATCGATTGACC 53899 Query 297364 GTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTG 297423 ||| |||| || ||| || || | || || ||| | || | | || || || | Sbjct 53900 GTCTTCATCCAAATACTTGAGCACATCATTGTCTAAAGGATCGTAGATCTTGCGGGTAAG 53959 Query 297424 AGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCT 297483 | | || || |||||||| || || | ||| || |||||| || ||| ||| | Sbjct 53960 TTGCTCCAAATTGGTGAAAATGTAACGAGAACTTGCCGCATCCTTGCCGCCCATCAAACG 54019 Query 297484 CGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTG 297543 || ||| ||||| || ||| ||| || |||||||||||||| ||| |||| || Sbjct 54020 CGTACCAAACTGACCGATTGGCGACAGAAGGTGAATGTTATTGCTTCCAACAAAATCTTG 54079 Query 297544 TGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTC 297603 ||| | |||||||| || |||| | | |||||| ||||| || || ||||| Sbjct 54080 TGCCATATTCACGATACAACCCTGCAAACTTTGTTCGCCGTGGTGGTACGCAGAGTGCTC 54139 Query 297604 TGCAACGTAACC-GCTGAACTGTGCAACCTT 297633 | |||||||| ||| || || || ||||| Sbjct 54140 GGATACGTAACCTGCT-AATTGCGCCACCTT 54169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102709216964100