Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq5177 412 1e-110 >seq5177 Length=2144 Score = 412 bits (456), Expect = 1e-110 Identities = 739/1065 (69%), Gaps = 37/1065 (3%) Strand=Plus/Plus Query 51901 AGAGCCAATGTTCTTTGGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGG 51960 ||| || ||||||||||||||| ||| ||||| || || |||||||| ||||| ||| Sbjct 6 AGAACCGATGTTCTTTGGTCAGCCCGTCAACGTGGCGCGGTATGACCAGCAGAAATACCC 65 Query 51961 CATATTCGAGAAGTTAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGA 52020 ||||||| || | || ||||||||| |||||||||||||||| ||||||||||| || Sbjct 66 GGTATTCGAAAAACTGATCGAGAAACAACTGTCATTCTTCTGGCGTCCGGAAGAGGTGGA 125 Query 52021 CGTTTCCCAGGACCGTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCAC 52080 || || ||||||||| |||||||||| || || | | ||| | ||||| |||| Sbjct 126 TGTGTCACAGGACCGTTCTGATTATCAGGGCCTGCCCGAGCATGAAAAGCACATCTTCAT 185 Query 52081 CAGTAATCTTCGTTATCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGT 52140 ||| || ||| || |||| || || || || || ||||| ||| | || ||| | Sbjct 186 CAGCAACCTTAAGTACCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGC 245 Query 52141 TTTGCTTCCAATCGTGAGCATT-CCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCT 52199 |||||| || | ||| |||| ||||| | || || ||||| ||||||||| | || | Sbjct 246 TTTGCTACCGCTGGTG-TCATTGCCTGAGATTGAAACCTGGATAGAAACCTGGGCGTTTT 304 Query 52200 CCGAGACTATTCATTCACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAA 52259 ||||||| || || || || || || ||||| ||||| || || || || | || || Sbjct 305 CCGAGACCATACACTCGCGCTCGTACACCCATATCATCCGCAACATCGTCAATGATCCCT 364 Query 52260 GCATTATCTTTGATGAAATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCT 52319 ||| || |||||||| ||||| || ||| |||||| || || ||| | ||| Sbjct 365 CCATCATTTTTGATGACATCGTGCGCAATGAAAACATCACCGCGCGCGCATCGGATATCG 424 Query 52320 CCCAATATTATGACGAAC---TCCAGCAACTCACTGCATTA-TGGCAGTTGTTCGGAGAA 52375 | || ||||| || |||| |||| || || ||| || | ||| || || ||| Sbjct 425 CGCATTATTACGATGAACTGATCCACCAGACCA-TGCTGTATTCACAGCTG---GGCGAA 480 Query 52376 GG-GAGC-CATGCT------GGTCATGAAATTAGTC----TGCGTGAGTTGAAGAAGAAG 52423 || |||| ||| | | | |||| ||| || ||| |||| || | Sbjct 481 GGTGAGCACATCATCAATGGCGAAACCAAATCGGTCAACAAACGCGAGCTGAAAAAACTG 540 Query 52424 CTGTATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTT 52483 || || ||||| ||| | ||| ||||||| || |||||||| |||||||| Sbjct 541 CTTTACCGCTGCCTGATGAACGTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTC 600 Query 52484 GCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGC 52543 || |||||||| ||||| || || || ||| | |||||||| || |||||||| || ||| Sbjct 601 GCCTGCTCATTCGCCTTTGCCGAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGC 660 Query 52544 TTAATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTT 52603 | ||||| || |||||||| || || |||| || || ||||||||||| || | || | Sbjct 661 CTGATTGCGCGTGATGAAGCCCTGCACCTGACCGGCACCCAGCACATGCTCAA-CATCAT 719 Query 52604 GCAAGT---GGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAA 52660 || || || |||| ||||| || | | || ||||| ||||||| | ||||| Sbjct 720 GC--GTTCCGGTCAAGACGACCCCGAGTTCGCCGAGATTGCCGCTGAATTGCATCAAGAG 777 Query 52661 TG---CCAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTG 52717 || | ||| ||||| || || || | || || || | ||||| || || || Sbjct 778 TGTTTCGAGA---TGTTCAAAACCGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTG 834 Query 52718 TTCAAAGATGGCTCTATGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATAT 52777 || ||||||||||| ||||| ||| | ||||| | || || ||| ||||| ||||| Sbjct 835 TTTAAAGATGGCTCCATGATAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGAATAC 894 Query 52778 ATCACGAATATTCGTATGCAAGCAGTTGGATTAGATGCTCCATT---CAAAGGTGCAACT 52834 ||||| || | |||||| | ||||| || || |||| ||| | || Sbjct 895 ATCACCAACAGCCGTATGGCCTCGGTTGGTTTGCCAGCCGCATTCCCCAATGCCAAAAGC 954 Query 52835 AACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAG 52894 ||||||||||| ||||| || | ||| || || ||| | ||||| || || || ||| Sbjct 955 AACCCGATTCCATGGATCAACACCTGGCTGGCGTCAGATACCGTACAAGTCGCCCCGCAG 1014 Query 52895 GAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAA 52939 ||| || | || ||||||||| |||| || ||||| || ||| Sbjct 1015 GAAGTAGAACTCAGCTCCTACCTGATCGGTCAGATTGATTCAGAA 1059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169374087729884