Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_010116.1
Length=58663
Score E
Sequences producing significant alignments: (Bits) Value
seq4113 104 9e-18
seq3194 86.0 2e-12
>seq4113
Length=2865
Score = 104 bits (114), Expect = 9e-18
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 6641 ATCGAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAA 6699
|||||| ||| ||||| ||||||||| ||||| |||||| | |||| |||||| ||
Sbjct 166 ATCGACCGCG-TCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAA 108
Query 6700 CCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCT 6759
||| || ||||||||||| || || || ||||| |||||| || |||| ||| |||||||
Sbjct 107 CCCGTGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCT 48
Query 6760 G 6760
|
Sbjct 47 G 47
>seq3194
Length=4057
Score = 86.0 bits (94), Expect = 2e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 6659 ATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAACCCCTGCGGTGAGCAACCG 6718
||||||||| ||||| ||| || | |||| ||| || ||||||||||| ||||||||
Sbjct 1 ATGAACAACAACTGGTTCTGTGAAAACATCCGCGCTACCAACCCCTGCGGCGAGCAACCA 60
Query 6719 CTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCTG 6760
| ||||| ||||| || ||| || ||||||| | ||||||
Sbjct 61 TTGCCGCCATACGGCGCGTGCCTGCTGGGCTCAGTTAACCTG 102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 187573075413500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |