Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq4113 104 9e-18 seq3194 86.0 2e-12 >seq4113 Length=2865 Score = 104 bits (114), Expect = 9e-18 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 6641 ATCGAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAA 6699 |||||| ||| ||||| ||||||||| ||||| |||||| | |||| |||||| || Sbjct 166 ATCGACCGCG-TCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAA 108 Query 6700 CCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCT 6759 ||| || ||||||||||| || || || ||||| |||||| || |||| ||| ||||||| Sbjct 107 CCCGTGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCT 48 Query 6760 G 6760 | Sbjct 47 G 47 >seq3194 Length=4057 Score = 86.0 bits (94), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 6659 ATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAACCCCTGCGGTGAGCAACCG 6718 ||||||||| ||||| ||| || | |||| ||| || ||||||||||| |||||||| Sbjct 1 ATGAACAACAACTGGTTCTGTGAAAACATCCGCGCTACCAACCCCTGCGGCGAGCAACCA 60 Query 6719 CTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCTG 6760 | ||||| ||||| || ||| || ||||||| | |||||| Sbjct 61 TTGCCGCCATACGGCGCGTGCCTGCTGGGCTCAGTTAACCTG 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187573075413500