Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq151 91.5 2e-13
seq1324 89.7 6e-13
>seq151
Length=51439
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||| |||| || |||||| || || ||||| ||| ||| || || |||| ||
Sbjct 38063 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTC 38122
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| || || || || || ||||||||||| | || | || ||||||||||
Sbjct 38123 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38182
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
||| || || || | | | | || ||| || ||||| || | ||| || || ||
Sbjct 38183 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTT 38242
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | |||||| || || || |||||
Sbjct 38243 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38272
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||| |||| || |||||| || || ||||| || ||| || || |||| ||
Sbjct 38291 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 38350
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| || || || || || ||||||||||| | || | || ||||||||||
Sbjct 38351 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38410
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
||| || || || | | | | || ||| || ||||| || | |||||| || ||
Sbjct 38411 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38470
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| || | |||||| || || || ||||| ||
Sbjct 38471 CCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38503
>seq1324
Length=13147
Score = 89.7 bits (98), Expect = 6e-13
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
||||||| || ||||| || | || || || |||| || || ||||| || || || |
Sbjct 2104 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2163
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | || ||||| ||| || || || || | | | |
Sbjct 2164 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCA-CATTG 2222
Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
|| | ||||| || ||||| || | |||||| || ||||| || | |||||| |||
Sbjct 2223 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACA 2282
Query 42198 AAGATTTGCAT 42208
||||| |||||
Sbjct 2283 AAGATCTGCAT 2293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543130734126240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |