Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq151 131 2e-25 seq1324 116 4e-21 seq373 89.7 5e-13 >seq151 Length=51439 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| || || | |||||| || || || |||||||| || Sbjct 38274 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 38333 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| ||||||||||||||| | || |||||||||||||| || || Sbjct 38334 AGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38393 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCAC 64395 || || || || || || || || ||||| ||| || | | ||| |||| ||||| Sbjct 38394 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGC-TCCAC 38452 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||| || ||||| || || |||||||| ||||| || Sbjct 38453 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38503 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| || || | |||||| || || || |||||||| || Sbjct 38046 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 38105 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| ||||||||||||||| | || |||||||||||||| || || Sbjct 38106 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38165 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCAC 64395 || || || || || || || || ||||| ||| || | | ||| |||| ||||| Sbjct 38166 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGC-TCCAC 38224 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || ||||| || || |||||||| ||||| Sbjct 38225 GTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 >seq1324 Length=13147 Score = 116 bits (128), Expect = 4e-21 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| |||||||| || | || ||||| ||||||| || |||||||||||| | || Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| |||||||| ||||| || || || || || ||||| ||| || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2225 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | |||||||| ||||| || || || | Sbjct 2226 ATGCTGTCGGA-CGGC-TCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAA 2283 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 2284 AGATCTGCAT 2293 >seq373 Length=42858 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | |||||| || || | |||||| || || || |||||||| || | Sbjct 34200 ACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 34259 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || ||||||||||| || | ||||| ||||||||||| || || Sbjct 34260 CAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 34319 Query 64336 AATTCCT 64342 ||||||| Sbjct 34320 AATTCCT 34326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499569316161840