Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq5730 131 2e-25 seq10663 95.1 2e-14 >seq5730 Length=1907 Score = 131 bits (144), Expect = 2e-25 Identities = 319/474 (67%), Gaps = 12/474 (3%) Strand=Plus/Minus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 ||| | ||||||||||| ||||||||||||||| ||||| || ||||| || | | Sbjct 1161 CAGATCGGCACGCTGGGCGGCGGCAACCACTTCATCGAACTCTGTCTGGACGAGACCGAC 1102 Query 41441 GACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCAC 41500 | |||||| | ||| |||| ||||| ||||| || |||||| | |||||| || Sbjct 1101 GCGGTGTGGGTGATGTTGCACAGCGGCTCGCGTGGCACCGGCAACCTGATCGGCACCTAC 1042 Query 41501 TACATCGAGCGTGCGC---AGAA---GGAGTGCGGCATG-TGGCACAGCAGCCTGCCGCA 41553 | ||||||||| |||| || | || | || || ||| || ||||| | Sbjct 1041 TTCATCGAGCGGGCGCGTGAGCAACTGGCACACCGCGTGCTGGGCTTTCA-TCTGCCCGA 983 Query 41554 CAACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCAT 41613 ||| || || || |||||| ||| | ||| ||| || | || || | | Sbjct 982 CAAGGACCTGGCCTTCTTCATGCAGGGCGAGCCGCTGTTCGATGAGTATGTGGAAGCGGT 923 Query 41614 GCTGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCA 41673 | |||||||||||| | ||| || | ||||||| | |||| || | ||| | Sbjct 922 GTCGTGGGCGCAGGATTACGCACGCGAAAATCGTGAAGCGATGATGGCGCGGGTGTTGGC 863 Query 41674 AGCGCTGCGTCGTCATCTGCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCA 41733 | | |||||| | ||||||| ||| ||||| | | |||||| ||||||||||| Sbjct 862 GGAGATGCGTCACCGTCTGCCGAAGTTCCAGCTGGAGAAGCTGGCGGTCAACTGCCACCA 803 Query 41734 CAACTATTGTG-AGCAGGAGAACCA-CTTCGGGCGCAACGTGTGGGTCACGCGCAAGGGT 41791 |||||| |||| || ||||| || | | | | | || || | |||| || ||||| Sbjct 802 CAACTA-TGTGCAGAGGGAGACGCACCATGGCGAGGAA-TTGCTGATCACCCGTAAGGGC 745 Query 41792 GCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACG 41845 ||||| | |||||| | ||| ||||| |||||||| || |||||| ||| Sbjct 744 GCGGTGAGCGCACGTACCGGCGAGCTGGGCATCATTCCCGGCAGCATGGGCACG 691 Score = 122 bits (134), Expect = 1e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 40991 GTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCT 41050 || ||| ||||||| |||| |||| |||| ||| || || || ||||||||| | Sbjct 1497 GTGGCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATCCCG 1438 Query 41051 ACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCG 41110 || | ||||||||||| ||||| ||||| |||||||| |||||||||||||||| ||| Sbjct 1437 ACCCGCGGTGCCATCATCCCGGCCGCGGTTGGCGTGGATATCGGCTGCGGCATGGCCGCG 1378 Query 41111 GTTCGTACCAGTCTCAAGGCCAGTCAGTTGCCGGACAACCTG 41152 || || |||| || ||||| | |||||||||||||| Sbjct 1377 GTGCGCACCACCCTGCGTGCCAGCGACCTGCCGGACAACCTG 1336 >seq10663 Length=1062 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 186303 GAGCGGGCGACGAGACTCGAACTCGCGACATCTTGCTTGGAAGGCAAGAACTCTACCAAC 186362 |||||||||||||| ||||||||||||||| | ||||||||||| || |||||||||| Sbjct 126 GAGCGGGCGACGAGGCTCGAACTCGCGACAACCAGCTTGGAAGGCTGGAGCTCTACCAAC 67 Query 186363 TGAGCTACGCCCGCA 186377 |||||||| ||||| Sbjct 66 TGAGCTACTTCCGCA 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739776221420400