Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq7712 230 1e-55 seq2623 122 4e-23 seq7041 98.7 5e-16 seq304 93.3 2e-14 >seq7712 Length=1425 Score = 230 bits (254), Expect = 1e-55 Identities = 457/669 (68%), Gaps = 21/669 (3%) Strand=Plus/Plus Query 65904 GTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTAT 65963 || || | |||||| ||||| ||| | ||||| ||| || || ||||| || Sbjct 717 GTCGAAATCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTG 776 Query 65964 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 66023 |||| |||||| || ||||| |||||||| || || || || || ||| | || ||| | Sbjct 777 CCGAAGGGCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACC 836 Query 66024 CTCCACGCGGTGGC-CAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGA 66082 || || || | || || |||| |||| ||||||| ||| || | |||||||||||| Sbjct 837 CTGCAGGCCATTGCGCAGTGCC-AGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGA 895 Query 66083 ACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGT 66142 ||| | |||||||| ||||| | ||| || || |||||||| |||| || | Sbjct 896 GCATGCGCTCGACCCGATCTACGCGGGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCT 955 Query 66143 TGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGG 66202 |||||| ||||| || |||||||| ||||| |||| ||| | || || || | Sbjct 956 ATCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTCGAG 1015 Query 66203 CGAGGTTTCCATCATCGTTGTG---GACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCT 66259 | || || || ||||| ||| ||||| ||||| || ||| ||| |||||| | Sbjct 1016 CTCGG--TCGAT-ATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAAT 1072 Query 66260 CGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCAT 66319 |||||| || || || ||| || || ||||| || || |||||| || || | Sbjct 1073 CGAAGGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCT 1132 Query 66320 GCGCAAGCTGACCGGCACGATTGCCAGC--ACCAACACGCTCACCCTGTGGGTGAATCAG 66377 ||||||||||||||| | || | ||| ||||||| | | | | || ||| Sbjct 1133 GCGCAAGCTGACCGGTAACAT--CAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAG 1190 Query 66378 CTGCGCGAGAAGATCGGCAACGT------GGGCTACGGCCCGAATGAGACCACCACCGGT 66431 ||||| | ||||||||| | | ||| | ||||| | | | |||||||| Sbjct 1191 TTGCGCCACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTG---ACCACCGGC 1247 Query 66432 GGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAG 66491 ||||| || || |||||||||||||||||| |||| |||| | |||| | | Sbjct 1248 GGTAACGCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATC 1307 Query 66492 AAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTG 66551 ||| |||| || ||| ||||||||| || | ||||| |||||||||||| || Sbjct 1308 AAGAAAGGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTG 1367 Query 66552 GCGCCTCCG 66560 ||||||||| Sbjct 1368 GCGCCTCCG 1376 >seq2623 Length=5434 Score = 122 bits (134), Expect = 4e-23 Identities = 286/428 (67%), Gaps = 13/428 (3%) Strand=Plus/Minus Query 66054 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 66113 || ||| ||| || | ||||| ||||| ||| | || ||||| | || || || Sbjct 432 GGCGGCGTCGCGGCTTTTATCGATGCCGAGCATGCGCTGGACCCGCAATATGCAGCCAAA 373 Query 66114 CTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTG 66173 || || ||| |||| |||| || || |||||||||||||||||| ||||| ||| Sbjct 372 CTGGGCGTGAATGTGCCTGATCTGTTGATTTCGCAGCCAGACACTGGCGAACAGGCGCTG 313 Query 66174 GAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTG 66233 || |||| ||| | || || || || || || | || || |||||||| Sbjct 312 GAAATCGCCGACATGCTGGTGCGTTCAGGTTCTGTGGATATTGTGGTGGTTGACTCTGTC 253 Query 66234 GCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTG 66293 || || ||| ||||| || ||| | ||||| || || || ||| || | |||||| Sbjct 252 GCCGCGCTGACTCCGCGTGCAGAGATTGAAGGCGAAATGGGCGACAGCCATATGGGCCTG 193 Query 66294 CATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGC--ACCA 66351 || || ||||||||||| |||||| |||| || ||||| || | || | ||| |||| Sbjct 192 CAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAACTGACTGGTAACAT--CAAGCGTACCA 135 Query 66352 ACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGG-- 66409 | || || | | | || ||| | || ||| |||||| | || | ||| Sbjct 134 ATACACTGGTGATCTTCATTAACCAGATCCGTATGAAAATCGGCGTCATG---TTCGGTA 78 Query 66410 -CCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGG 66468 |||| || || || ||||| || || || || ||||||||||| ||||| ||| Sbjct 77 ACCCG---GAAACAACGACCGGCGGCAACGCGCTTAAATTCTACGCCTCTGTGCGCCTGG 21 Query 66469 ATGTCCGC 66476 || ||||| Sbjct 20 ATATCCGC 13 >seq7041 Length=1559 Score = 98.7 bits (108), Expect = 5e-16 Identities = 372/576 (65%), Gaps = 17/576 (3%) Strand=Plus/Plus Query 65907 GACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCG 65966 ||| ||||||| |||||| | | | || |||| ||| || ||||| || || || Sbjct 206 GACGCCATTCCAACCGGCGCTCTGTCACTTGACGTCGCCCTTGGCATTGGTGGCCTGCCC 265 Query 65967 AGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTC 66026 | ||||| || | || | | ||| |||||| || || |||| | || Sbjct 266 CGCGGCCGTGTCATTGAAGTTTTCGGCGTAGAGTCTGGCGGTAAAACAACCATCACGCTT 325 Query 66027 CACGCGGTGGCCAATGCCCAGAAGGCCGGT-GGCAACGCCGCCTACATCGACGCCGAACA 66085 ||||| || ||| | ||||| | | | || || | |||||| | ||||||| ||||| Sbjct 326 CACGCTGTTGCCGAAGCCCA-ACGTCAGGGCGGTATCGCCGCGTTTATCGACGTAGAACA 384 Query 66086 TTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGT 66145 | ||||| ||||| ||||| ||| | || || ||| | ||| || |||| Sbjct 385 CGCCCTCGATCCTGAATACGCTAAAGCGATTGGCGTCGATATTGACTCCCTGCTGGTCTC 444 Query 66146 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 66205 ||||| ||| || || | || || || ||| | || | || | || | Sbjct 445 TCAGCCCAGCACCGGTGAAGAAGCGCTAGAAATCATGGAACAGCTGATTCGCAGCGGTGC 504 Query 66206 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 66265 || |||||||||| ||||||| || || || || || | || | ||||| Sbjct 505 TGTCGACATCATCGTTCTGGACTCGGTTGCCGCTCTTGTCACCAAAAACGAAATTGAAGG 564 Query 66266 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 66325 || || || || | ||||||||| |||| |||||| ||||||||||||| |||| || Sbjct 565 CGAAATGGGTGATACCCACGTCGGCTTGCAGGCCCGCTTGATGTCTCAGGCTCTGCGTAA 624 Query 66326 GCT--GACCGG-CACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCG 66382 || ||||| |||| ||| || ||||||| || | | || || |||||||| Sbjct 625 ACTCACACCGGTCACG---GCCCGCTCCAACACTGTCGTAATCTTCGTCAACCAGCTGCG 681 Query 66383 CGAGAAGATCGGC---AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGC 66439 || || ||||| | | ||| || |||||| |||||| | |||||| || Sbjct 682 TGAAAAAGTCGGCGTGATGTTCGGCAAC--CCCGAA----ACCACCCCAGGTGGTCGCGC 735 Query 66440 TCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCG 66475 ||||| ||||| | || || ||| | || || || Sbjct 736 GCTGCGTTTCTATTCTTCTGTCCGTCTTGAAGTACG 771 >seq304 Length=36179 Score = 93.3 bits (102), Expect = 2e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 66146 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 66205 |||||| ||| |||| || | || |||||||||| |||| || ||| ||| || | Sbjct 15249 GCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTGACACACTGATCAGGTCGGGAGC 15308 Query 66206 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 66265 || | | |||| | ||| ||| || ||||| ||||| || || ||||| ||||| Sbjct 15309 AGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCTCGTGCCCCGAGCAGAGCTGGAAGG 15368 Query 66266 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 66325 ||| || || ||| ||| | | ||||| || ||||| ||| ||| || ||||||| Sbjct 15369 GGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACGCCTAATGAGTCAAGCTCTGCGCAA 15428 Query 66326 GCTGACCGG 66334 |||||| || Sbjct 15429 GCTGACTGG 15437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242434684564712