Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq75 203 3e-47 >seq75 Length=61118 Score = 203 bits (224), Expect = 3e-47 Identities = 1066/1696 (63%), Gaps = 44/1696 (3%) Strand=Plus/Minus Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 ||||| | |||||||| ||||| || || || ||||| || || |||||||||| | Sbjct 22112 CCATG-CGACCCCGACGCTGTTTAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCT 22054 Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 | | || | | || | || ||||| ||||| | || | | | || | |||| Sbjct 22053 TTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTATGATACCTTGAAACAATGTG 21994 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066 || ||| || |||| || || || || || || ||| | ||| | | || |||| | Sbjct 21993 CGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTATGCACAATATCCGGGCCACGA 21934 Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126 | |||||| || || || |||||| | || ||||| | |||| ||||| || || | Sbjct 21933 ATAGCTACATTCGAGGCACTAATGGCTCTTCGAACGGGATTATCCCCATGCTTCGCGTGT 21874 Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186 | || || |||| || |||||||| || ||||| || | | || || || || ||| Sbjct 21873 TTAATGACACGGCACGATACGTGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGA 21814 Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246 |||| | || || |||||||| |||||| | || |||| |||| || || || | Sbjct 21813 TCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCATG 21754 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 |||| || || | |||| | ||| | |||| || | ||||| || || || || | Sbjct 21753 GCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGGGTACCCGATCTATTCA 21694 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 ||||||| || || ||| |||||| | || ||||| |||||| ||| || | Sbjct 21693 TGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCAAATGAAGCTCCAGGGC 21634 Query 94367 TGTCCGACGTTTGTGGAT-CGCGTTTTGAAGACTT-GTATGCTCGTTACGAATCGCAGGG 94424 ||| ||| || || || |||| |||||| ||||| |||||| |||| Sbjct 21633 TGTACGAGTACTGGGGCGACGAGTTTG--AGACTTTGTATGAAAAGTACGAACAAGAGGG 21576 Query 94425 CAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGT 94484 ||| |||||| || |||| | |||||||| | |||| |||| | ||| | Sbjct 21575 ACGGGCGAGGAAGACGATCAATGCCCAGCAGCTGTGGTTTGCGATCTTGGATGCGCAGAT 21516 Query 94485 GGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCA 94544 || ||||| ||||| || | | ||||| | || ||| ||| || |||||||| Sbjct 21515 TGAAACGGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACCGCAAATCGAACCAGCA 21456 Query 94545 GCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCC 94604 | |||| || |||| | | || ||||| || | | |||| || || || Sbjct 21455 GAACCTTGGCACGATCCGGTCCAGTAACTTGTGCTGTGAAGTGATGGAGTTCACGTCGCC 21396 Query 94605 GGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGC 94664 ||| || | || |||||||| ||| || | ||| ||| || || ||| | Sbjct 21395 GGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAGCGCTGCCCAAGTTTGTTGAAGACGG 21336 Query 94665 CTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGG 94723 | || || | | | ||| | || |||| | || || || | | Sbjct 21335 CGT---GTTTAATTACAAGA---AGCTGTACGAC---GTGACCAGCGTCGTGACGCGT-- 21287 Query 94724 TCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 |||||||||| ||| || || ||| | ||||||||| | || || | | Sbjct 21286 -----AACCTGAACAAGGTGATTGAGGTGAATTACTACCCCGTTGCAGAAGCTCGCACGT 21232 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || ||||||| || ||||||||| ||||||| ||| | | Sbjct 21231 CCAACATGCGCCACCGTCCAGTCGGCATTGGTGTCCAGGGTCTCGCGGATGCGTTTATTC 21172 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCG-----GCGGGTT-TGAATTTGAACATAT 94897 | ||| ||||| | || || | ||||| ||||| |||||| | Sbjct 21171 TCATGAA------CTACGCGTTTGAAAGCGAGCAAGCGCGGGAGCTGAATAAGAACATCT 21118 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 |||| | || || |||| | ||||| || | | | |||| ||| | Sbjct 21117 TCGAGACGATCTACTACGCTTCGATGAAGACGTCGATGGAGATTGCCAA---GGAATTGG 21061 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCT 95017 | || |||| |||||| || || || | |||| || || ||||||||| | | Sbjct 21060 GTCCGTACGAGACGTTCCAGGGCTCTCCAGCGAGCAAGGGGATCTTCCAGTTCGACATGT 21001 Query 95018 GGGGTGTGAAGCCCTCG---GGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTAT 95072 |||| || | ||| ||| ||||| | |||||| | || | | | | | || || Sbjct 21000 GGGGCGTCACGCCGTCGTCAGGTCTTTGGGACTGGACGGAGTTGAAGGAGA--ACGTGAT 20943 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| | || | ||| | ||||| ||||| || ||||| ||||| || ||||| || Sbjct 20942 CAAGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCA 20883 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||| || ||||||||||||||| | || || | ||| || || |||||||| | || || Sbjct 20882 GATTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGT 20823 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 ||| || || || || | | | |||||| |||| | ||| ||| ||||| Sbjct 20822 GCTGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGAAGGAATTGATTGACCTGGG 20763 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 | ||| | | ||| |||||| | || || | |||||||| || || | Sbjct 20762 CATCTGGACGCCCGAAGTCCGCAACCAAATTCTGAACGACGGTGGCTCCGTGCAAAAGGT 20703 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || ||| | || |||||| |||||||| |||||||| || |||| Sbjct 20702 TAAGACCATCCCGAATGATGTCAAGGAAAAGTACAAGACAGTGTGGGAAATTAAGCAGAA 20643 Query 95373 CGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNN 95432 ||| | || | | |||| | || || | | ||| |||||||| Sbjct 20642 GTCGATCTTGGATCTCTCGGCTGATCGTGGCGCGTACATTTGCCAGAGCCAGTCGCTCAA 20583 Query 95433 NNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAG 95492 || || || || | | | || | ||||| ||| || |||| ||||| Sbjct 20582 TATTCATATTGCGGATCCGACGATCAGTAAGCTGACGTCGATGCACTTTTACGCGTGGAA 20523 Query 95493 AAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACA 95552 ||||| |||||||| ||||||||||| |||| | || || || ||| |||| || Sbjct 20522 GAAGGGGCTCAAGACGGGTATGTATTACATGCGTGGGCGCCCGAAAGCTGACGCCATCCA 20463 Query 95553 GTTCGCCCTAGAAAAG 95568 |||| || | || ||| Sbjct 20462 GTTCACCGTGGACAAG 20447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494648459692560