Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq75 203 3e-47
>seq75
Length=61118
Score = 203 bits (224), Expect = 3e-47
Identities = 1066/1696 (63%), Gaps = 44/1696 (3%)
Strand=Plus/Minus
Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946
||||| | |||||||| ||||| || || || ||||| || || |||||||||| |
Sbjct 22112 CCATG-CGACCCCGACGCTGTTTAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCT 22054
Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006
| | || | | || | || ||||| ||||| | || | | | || | ||||
Sbjct 22053 TTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTATGATACCTTGAAACAATGTG 21994
Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066
|| ||| || |||| || || || || || || ||| | ||| | | || |||| |
Sbjct 21993 CGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTATGCACAATATCCGGGCCACGA 21934
Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126
| |||||| || || || |||||| | || ||||| | |||| ||||| || || |
Sbjct 21933 ATAGCTACATTCGAGGCACTAATGGCTCTTCGAACGGGATTATCCCCATGCTTCGCGTGT 21874
Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186
| || || |||| || |||||||| || ||||| || | | || || || || |||
Sbjct 21873 TTAATGACACGGCACGATACGTGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGA 21814
Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246
|||| | || || |||||||| |||||| | || |||| |||| || || || |
Sbjct 21813 TCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCATG 21754
Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306
|||| || || | |||| | ||| | |||| || | ||||| || || || || |
Sbjct 21753 GCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGGGTACCCGATCTATTCA 21694
Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366
||||||| || || ||| |||||| | || ||||| |||||| ||| || |
Sbjct 21693 TGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCAAATGAAGCTCCAGGGC 21634
Query 94367 TGTCCGACGTTTGTGGAT-CGCGTTTTGAAGACTT-GTATGCTCGTTACGAATCGCAGGG 94424
||| ||| || || || |||| |||||| ||||| |||||| ||||
Sbjct 21633 TGTACGAGTACTGGGGCGACGAGTTTG--AGACTTTGTATGAAAAGTACGAACAAGAGGG 21576
Query 94425 CAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGT 94484
||| |||||| || |||| | |||||||| | |||| |||| | ||| |
Sbjct 21575 ACGGGCGAGGAAGACGATCAATGCCCAGCAGCTGTGGTTTGCGATCTTGGATGCGCAGAT 21516
Query 94485 GGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCA 94544
|| ||||| ||||| || | | ||||| | || ||| ||| || ||||||||
Sbjct 21515 TGAAACGGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACCGCAAATCGAACCAGCA 21456
Query 94545 GCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCC 94604
| |||| || |||| | | || ||||| || | | |||| || || ||
Sbjct 21455 GAACCTTGGCACGATCCGGTCCAGTAACTTGTGCTGTGAAGTGATGGAGTTCACGTCGCC 21396
Query 94605 GGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGC 94664
||| || | || |||||||| ||| || | ||| ||| || || ||| |
Sbjct 21395 GGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAGCGCTGCCCAAGTTTGTTGAAGACGG 21336
Query 94665 CTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGG 94723
| || || | | | ||| | || |||| | || || || | |
Sbjct 21335 CGT---GTTTAATTACAAGA---AGCTGTACGAC---GTGACCAGCGTCGTGACGCGT-- 21287
Query 94724 TCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783
|||||||||| ||| || || ||| | ||||||||| | || || | |
Sbjct 21286 -----AACCTGAACAAGGTGATTGAGGTGAATTACTACCCCGTTGCAGAAGCTCGCACGT 21232
Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843
| ||| || || || || ||||||| || ||||||||| ||||||| ||| | |
Sbjct 21231 CCAACATGCGCCACCGTCCAGTCGGCATTGGTGTCCAGGGTCTCGCGGATGCGTTTATTC 21172
Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCG-----GCGGGTT-TGAATTTGAACATAT 94897
| ||| ||||| | || || | ||||| ||||| |||||| |
Sbjct 21171 TCATGAA------CTACGCGTTTGAAAGCGAGCAAGCGCGGGAGCTGAATAAGAACATCT 21118
Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957
|||| | || || |||| | ||||| || | | | |||| ||| |
Sbjct 21117 TCGAGACGATCTACTACGCTTCGATGAAGACGTCGATGGAGATTGCCAA---GGAATTGG 21061
Query 94958 GGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCT 95017
| || |||| |||||| || || || | |||| || || ||||||||| | |
Sbjct 21060 GTCCGTACGAGACGTTCCAGGGCTCTCCAGCGAGCAAGGGGATCTTCCAGTTCGACATGT 21001
Query 95018 GGGGTGTGAAGCCCTCG---GGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTAT 95072
|||| || | ||| ||| ||||| | |||||| | || | | | | | || ||
Sbjct 21000 GGGGCGTCACGCCGTCGTCAGGTCTTTGGGACTGGACGGAGTTGAAGGAGA--ACGTGAT 20943
Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132
||| | || | ||| | ||||| ||||| || ||||| ||||| || ||||| ||
Sbjct 20942 CAAGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCA 20883
Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192
||| || ||||||||||||||| | || || | ||| || || |||||||| | || ||
Sbjct 20882 GATTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGT 20823
Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252
||| || || || || | | | |||||| |||| | ||| ||| |||||
Sbjct 20822 GCTGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGAAGGAATTGATTGACCTGGG 20763
Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312
| ||| | | ||| |||||| | || || | |||||||| || || |
Sbjct 20762 CATCTGGACGCCCGAAGTCCGCAACCAAATTCTGAACGACGGTGGCTCCGTGCAAAAGGT 20703
Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
| || ||| | || |||||| |||||||| |||||||| || ||||
Sbjct 20702 TAAGACCATCCCGAATGATGTCAAGGAAAAGTACAAGACAGTGTGGGAAATTAAGCAGAA 20643
Query 95373 CGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNN 95432
||| | || | | |||| | || || | | ||| ||||||||
Sbjct 20642 GTCGATCTTGGATCTCTCGGCTGATCGTGGCGCGTACATTTGCCAGAGCCAGTCGCTCAA 20583
Query 95433 NNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAG 95492
|| || || || | | | || | ||||| ||| || |||| |||||
Sbjct 20582 TATTCATATTGCGGATCCGACGATCAGTAAGCTGACGTCGATGCACTTTTACGCGTGGAA 20523
Query 95493 AAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACA 95552
||||| |||||||| ||||||||||| |||| | || || || ||| |||| ||
Sbjct 20522 GAAGGGGCTCAAGACGGGTATGTATTACATGCGTGGGCGCCCGAAAGCTGACGCCATCCA 20463
Query 95553 GTTCGCCCTAGAAAAG 95568
|||| || | || |||
Sbjct 20462 GTTCACCGTGGACAAG 20447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494648459692560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |