Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq732 147 2e-30
seq151 107 2e-18
seq1324 105 7e-18
>seq732
Length=22061
Score = 147 bits (162), Expect = 2e-30
Identities = 303/449 (67%), Gaps = 9/449 (2%)
Strand=Plus/Minus
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
|| ||||| || |||| || ||| ||||| ||| | || || || ||| || |
Sbjct 9120 GCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGC 9061
Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511
| ||||||| | || | | || | ||||| ||||| | ||| |||||| |
Sbjct 9060 TCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTC 9001
Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGACGCGC 52568
|| || || || || ||||||||||||||||||||||| |||| |||| |
Sbjct 9000 ATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTCCAAG---CTA 8944
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628
|||| | || || |||| ||| | || | || || ||| | |||
Sbjct 8943 GTGAAC---AAGCTGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATC 8887
Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688
|| | |||||| | || | ||||||| || |||||| | ||||||||| || | |
Sbjct 8886 GAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTC 8827
Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAG 52748
|||||| ||||||| |||||||| ||||| || |||||| |||||| | | |||
Sbjct 8826 ATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAG 8767
Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808
||| | || || || ||||| | ||| ||| || |||||| ||||||||||
Sbjct 8766 ATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACG 8707
Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||||||||||| || ||||||||
Sbjct 8706 AACTTTTTCGAGAAGCGTGTGGGCGAGTA 8678
>seq151
Length=51439
Score = 107 bits (118), Expect = 2e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| |||| ||||| ||| || || || || |||| |
Sbjct 38079 GACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38138
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| ||||| || || || || || ||||| ||| || || || | |
Sbjct 38139 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38198
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | | ||| | || |||||| || | ||| | ||| || || |||| || ||
Sbjct 38199 TTG-TCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTTCCCTGTCAACGTCTT 38257
Query 138600 TACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 38258 CACGAAAATCTGCATG 38273
Score = 105 bits (116), Expect = 7e-18
Identities = 142/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || ||| || || || || |||| |
Sbjct 38307 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCA 38366
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| ||||| || || || || || ||||| ||| || || || | |
Sbjct 38367 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38426
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | | ||| | || |||||| || | ||| | ||| || || |||| || ||
Sbjct 38427 TTG-TCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTT 38485
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 38486 CACGAAAATCTGCAT 38500
>seq1324
Length=13147
Score = 105 bits (116), Expect = 7e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
||||||| ||||||||||| | || || ||| || ||||| || |||| | |||
Sbjct 2104 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2163
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| |||||||| ||||| ||||| || ||||| || || || || || || | ||||
Sbjct 2164 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTG- 2222
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | | |||||| || |||||| || | ||| | ||| || || |||| || || |||
Sbjct 2223 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACA 2282
Query 138604 AAAATCTGCATG 138615
|| |||||||||
Sbjct 2283 AAGATCTGCATG 2294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496187427157920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |