Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq732 147 2e-30 seq151 107 2e-18 seq1324 105 7e-18 >seq732 Length=22061 Score = 147 bits (162), Expect = 2e-30 Identities = 303/449 (67%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| || |||| || ||| ||||| ||| | || || || ||| || | Sbjct 9120 GCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGC 9061 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||||| | || | | || | ||||| ||||| | ||| |||||| | Sbjct 9060 TCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTC 9001 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGACGCGC 52568 || || || || || ||||||||||||||||||||||| |||| |||| | Sbjct 9000 ATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTCCAAG---CTA 8944 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628 |||| | || || |||| ||| | || | || || ||| | ||| Sbjct 8943 GTGAAC---AAGCTGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATC 8887 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || | |||||| | || | ||||||| || |||||| | ||||||||| || | | Sbjct 8886 GAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTC 8827 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAG 52748 |||||| ||||||| |||||||| ||||| || |||||| |||||| | | ||| Sbjct 8826 ATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAG 8767 Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 ||| | || || || ||||| | ||| ||| || |||||| |||||||||| Sbjct 8766 ATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACG 8707 Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||||| || |||||||| Sbjct 8706 AACTTTTTCGAGAAGCGTGTGGGCGAGTA 8678 >seq151 Length=51439 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| ||||| ||| || || || || |||| | Sbjct 38079 GACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38138 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || || | | Sbjct 38139 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38198 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||| | || |||||| || | ||| | ||| || || |||| || || Sbjct 38199 TTG-TCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTTCCCTGTCAACGTCTT 38257 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 38258 CACGAAAATCTGCATG 38273 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||| || || || || |||| | Sbjct 38307 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCA 38366 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || || | | Sbjct 38367 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38426 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||| | || |||||| || | ||| | ||| || || |||| || || Sbjct 38427 TTG-TCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTT 38485 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 38486 CACGAAAATCTGCAT 38500 >seq1324 Length=13147 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| ||||||||||| | || || ||| || ||||| || |||| | ||| Sbjct 2104 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2163 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| ||||| || ||||| || || || || || || | |||| Sbjct 2164 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTG- 2222 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | ||| || || |||| || || ||| Sbjct 2223 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACA 2282 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 2283 AAGATCTGCATG 2294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496187427157920