Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq75 122 8e-23 seq151 113 4e-20 seq732 102 8e-17 >seq75 Length=61118 Score = 122 bits (134), Expect = 8e-23 Identities = 332/505 (66%), Gaps = 9/505 (2%) Strand=Plus/Plus Query 145693 TTGCCGCACGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGT 145752 |||| | ||||||| | |||| ||| ||||||||||| | || | ||| ||| Sbjct 20429 TTGCAGATCGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGG 20483 Query 145753 TTTGTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATG 145812 |||| || ||||| || ||||||||| |||| ||||| ||||||||| || Sbjct 20484 CGCCCACGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATC 20543 Query 145813 CTCGACA--TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGAT 145870 || || | || || ||| || || || | | | ||| || || |||||||| Sbjct 20544 GACGTCAGCTTACTGAT--CGTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGC 20601 Query 145871 CAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATG 145930 |||| | | | || || || | | || | || |||| ||||||||||| Sbjct 20602 AAATGTACGCGCCACGATCAGCCGAGAGATCCAAGATCGACTTCTGCTTAATTTCCCACA 20661 Query 145931 CGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCAT 145990 | || || | |||||||| | | || || | || || ||||| || ||| Sbjct 20662 CTGTCTTGTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCAC 20721 Query 145991 TTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCT 146050 ||| || |||| |||||| | ||| || || | ||| || ||| | | ||| Sbjct 20722 CGTCGTTCAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCT 20781 Query 146051 TGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGT 146110 | || || |||| ||| || | | ||||||||| || || ||||| | |||| | Sbjct 20782 TCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATAT 20841 Query 146111 TGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAG 146170 | ||| ||||||| | |||||||||||| || || ||||| ||||||| ||| || | Sbjct 20842 TCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCG 20901 Query 146171 GCATGTACGCCACCAGCAAAGAGTT 146195 |||| |||||| |||| |||||| Sbjct 20902 GCATTGGCGCCACGAGCAGAGAGTT 20926 >seq151 Length=51439 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 38274 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 38333 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 38334 AGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38393 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | | || | | ||| | ||| || Sbjct 38394 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACG 38453 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || || |||| || || || ||||||||||| Sbjct 38454 TCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38500 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || ||||| || | | Sbjct 38046 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 38105 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || || || |||||| |||||||| || || || Sbjct 38106 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38165 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | | || | | ||| | ||| || Sbjct 38166 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACG 38225 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| || || |||| || || || |||||||||||| Sbjct 38226 TCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATG 38273 >seq732 Length=22061 Score = 102 bits (112), Expect = 8e-17 Identities = 286/432 (66%), Gaps = 29/432 (7%) Strand=Plus/Minus Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAGG 47218 ||||| ||| | |||||||||||| || ||| |||| |||| |||| | || Sbjct 9093 GTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGG 9035 Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278 | ||||| ||||||| || |||||||| || |||| || ||| ||||||| Sbjct 9034 TCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCATGCACAC 8975 Query 47279 CAACTTTGCCTGTCTC---TACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCAC 47335 ||||||| || ||| |||| ||| |||| | | ||| || || | | Sbjct 8974 GGACTTTGCGTGCCTCATGTACTCCAAG-CTAGTGA-----ACAAGCTGCCCGAGGACCG 8921 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 |||| | || || ||| || || | || ||| |||||| | || | || Sbjct 8920 CGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCT 8861 Query 47396 GCCCGAATCTTTAG----TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451 ||||| || || | || |||||| ||| | | ||| | ||||||| || |||| Sbjct 8860 GCCCG----TTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTG 8805 Query 47452 TCGCCGACCGCCTG-----CTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAA 47506 | || ||||||||| |||| || || || || ||||||| ||| | |||| Sbjct 8804 TAGCGGACCGCCTGTTGTACTCGCTCGGC----GTGTCG-AAGATTTTCCATGCAAAGAA 8750 Query 47507 TCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCG 47566 ||||| || | ||| ||| || ||||| |||||||||| ||||||||||||||||| Sbjct 8749 CCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCG 8690 Query 47567 CGTCGGCGAATA 47578 || ||||| || Sbjct 8689 TGTGGGCGAGTA 8678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475428963716640