Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_012742.1 Length=44080 Score E Sequences producing significant alignments: (Bits) Value seq7310 136 1e-27 >seq7310 Length=1497 Score = 136 bits (150), Expect = 1e-27 Identities = 399/610 (65%), Gaps = 6/610 (1%) Strand=Plus/Plus Query 16060 TCCGTGGATACTACGACGAGGACGGCAAGCTAATTGGTGGGATGGGGCTGTCCGATATGC 16119 |||| || ||||||||| || ||||||||| || | || ||||| | |||| | Sbjct 867 TCCGCGGCTACTACGACAAGAGCGGCAAGCTCATCGCCGGCATGGGCAAGAGCGATGAGG 926 Query 16120 TTATCGACATCCCAGCATTCCAAGCCTTCATGCTGCATTGTCAGGCCAACTCCTACACCT 16179 ||||||||| | | || | ||||||| || || | || ||| |||||||| Sbjct 927 AGATCGACATCGAGTCGCTGCAGGGCTTCATGGCCCACTGCGAAGCGAACGGCTACACCT 986 Query 16180 ACGATTACTACCTTAAGGAGCCACGCAACCACGACGAGGTACTAAGCGCCCTTGCTATGG 16239 ||||||||| || | || ||| | ||||| ||||| || || | || ||| Sbjct 987 ACGATTACTGGCTGACCGAAGAACGTAGTCACGATGAGGTGCTGCAGTCCATAGCGTTGG 1046 Query 16240 CGGGGTTCGGGCAGTACACGAATTCCTCGGGCCGCATCTCTGTAGCCTGGGCAGGTTCCG 16299 |||| | || ||| |||| | ||||| | || || | ||||| | || Sbjct 1047 CGGGCATGGGCCAGACCACGTGGGCAGGTGGCCGGTTGTCGGTGGTGTGGGCGGCCGACG 1106 Query 16300 AGCAGCCGGTCTCGGCAGTCGTTAATATGGCGACGATTAAAGATGCGCAG-TTCCAAGTG 16358 |||||||| | |||| || ||||| ||||| || | |||| | |||| ||| ||| Sbjct 1107 AGCAGCCGCTGTCGGGCGTGGTTAACATGGCCGAGA-TGAAGAAGGGCAGCTTCAGCGTG 1165 Query 16359 GATTACACTCTGTCTAACACGGCTGACGGCATCGAGCTGTCTTACTTTGATAGAGAGATA 16418 || ||||| ||| | | | | || || ||||||||| || || || || || | Sbjct 1166 GACTACACGCTGGCCAGCGCTGCCGATGGCATCGAGTACAGCTATTTCGACAGCACGACA 1225 Query 16419 TGGGATACCACCACGCTGCGTGTTGCTGCACCCGGTGTAACAACTATGCTCAACCCCGCC 16478 | | | || ||||| || | || || || || ||| ||||||||||| || Sbjct 1226 AAGAAGGTCGAGACCCTGCGCGTGCCAGCGCCGGGCGTGGAAACGATGCTCAACCCGGCG 1285 Query 16479 CAGATTACCGCAGAGGGTGTGACGGATGC--CGCGCGGGCAGCGGAGCTTGCCCGGTACC 16536 | | | |||| || ||| | ||| || |||| || || ||| | || || |||| Sbjct 1286 CGGCTCACCGGTGAAGGTAT--CGGCCGCGAGGCGCATGCGGCCGAGATGGCGCGCTACC 1343 Query 16537 ATCTCGGGCAGTCTCTGTATCAGTACAAGGATATTTCCTTCGCCACGGACCTAGAGCACC 16596 | || | || |||| ||||||||||| || ||| ||| ||||| || | | Sbjct 1344 ACCTGGCCCAAAGCCTGTTCCAGTACAAGGACATCGGCTTTGCCCAAGACCTGCAGTATC 1403 Query 16597 TGTCTTACCGCAGGCTATCTTTGCTGTCCCTCTCCCACGACCTAACACAGTGGGGGTTCA 16656 || | ||||| | | || || |||| |||| |||||||| || |||||||||||| Sbjct 1404 TGACGTACCGACGTATGTCGATGTTGTCGATCTCGCACGACCTCACGCAGTGGGGGTTCG 1463 Query 16657 GCGGTAGCAT 16666 |||| |||| Sbjct 1464 GCGGGCGCAT 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140914172918744