Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq7802 147 6e-31 >seq7802 Length=1410 Score = 147 bits (162), Expect = 6e-31 Identities = 225/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTC 8847 |||||||||||||||||||||| || ||| || ||||| || || ||||| | Sbjct 1066 GACTACCTGCAGCTGATGTCGG-TGCCGG--GCAACAGTGAAAACCGCGCGACCGAAATT 1010 Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907 | ||||| ||||| | ||||| | || ||||||||| | || ||| | || ||| Sbjct 1009 TCGGAAATCTCGCGTGGTCTCAAGGGCCTGGCCAAGGAACTCAATGTGCCGGTGATTGCG 950 Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967 ||||||||||| || || ||| || | || | ||||||| || || ||| |||| Sbjct 949 CTGTCGCAGCTCAACCGCTCGCTGGAAACCCGTACCGACAAGCGCCCGGTGATGGCCGAC 890 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027 ||||||| || || || ||||||||||| |||||| ||||| |||| ||||||||||| Sbjct 889 TTGCGCGAATCCGGCGCAATCGAGCAGGACGCCGACATGATCGTCTTCATCTACCGCGAC 830 Query 9028 GAGGTCTATAACCCCGACA--GCG-CAGATCGCGGTACGGCCGAAATCATCATTGCGAAG 9084 || ||| ||| || | || | ||| || |||||| |||||||| | ||| Sbjct 829 GATTACTACAACAAGGAAAATTCGCCGGATAAGGGCCTGGCCGAGATCATCATCGGCAAG 770 Query 9085 CAGCGAAACGGGCCGA 9100 || || ||| |||| Sbjct 769 CACCGTGGCGGACCGA 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127527294496056