Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq75 179 5e-40 seq732 143 3e-29 seq7156 105 8e-18 seq8805 104 3e-17 seq4369 100 3e-16 seq7774 95.1 1e-14 seq7203 86.0 8e-12 seq3 82.4 9e-11 >seq75 Length=61118 Score = 179 bits (198), Expect = 5e-40 Identities = 658/1012 (65%), Gaps = 35/1012 (3%) Strand=Plus/Plus Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 |||||| ||||||||||||| |||||||| | ||| | ||| || || | ||| || || Sbjct 21173 AATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGTGGCGCATGTTGGA 21232 Query 116298 CTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 | | ||||| ||| || |||| || ||||| || || ||| | || || || | Sbjct 21233 CGTGCGAGCT-TCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGTTCAGGTTACGCG 21291 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG 116415 | || || | || | || | ||||| | ||||| ||| || || |||||| Sbjct 21292 TCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCG----TCTTCA--- 21344 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| |||| || || || | ||||||| ||||||||| | |||||| ||| Sbjct 21345 ACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCGACGTG 21404 Query 116476 TACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 |||| || | ||| ||||| || || || || ||||| | ||||| || | Sbjct 21405 AACTCCATCACTTCACAGCACAAGTTACTGGACCGG--ATCGTGCCAAGGTTCTGCTGGT 21462 Query 116534 TTGACTTTGTGTTACAC-GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 | || |||| | | ||| |||||||| ||||||||| | ||| ||||| || | || Sbjct 21463 TCGA-TTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCTGC 21521 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGG-CGT-----TGGCTCGC 116646 | | | || || ||| | || ||||| || || ||| | || || Sbjct 21522 GCATCCAAGATCGCAAACCACA-----GCTGCTGGG-CATTGATCGTCTTCCTCGCCCGT 21575 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAG 116705 ||||| | ||||||||| || | | ||||||||| || ||| ||| ||| | || Sbjct 21576 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCC-CAGTACTCGTACAG 21634 Query 116706 CCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765 |||||| || | || ||||||||| | | ||| | |||| | || ||||| ||||| Sbjct 21635 CCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCAT 21694 Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825 ||| || || || | ||| | ||| |||| | ||||| ||| ||||| || Sbjct 21695 GAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCC 21754 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 116885 ||||| ||||| || | ||| || | | || |||||||||||||||| ||| | Sbjct 21755 ATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGAT 21814 Query 116886 CGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAA 116942 ||| | || || ||||| | ||| | || | || || | ||||| | ||||| Sbjct 21815 CGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21874 Query 116943 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT 117002 ||||||||||| || || || || | || |||||| || || ||||| || Sbjct 21875 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATT 21934 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 |||| | || || ||| || || ||||| || |||||||| || || || || Sbjct 21935 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 21994 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 || | | | | | ||||| || || || || ||| | || | || | | || Sbjct 21995 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22054 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 ||| |||| ||| || | || ||||| || || || || || || ||||| ||| | Sbjct 22055 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22114 Query 117183 GAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 || | || | || ||||| || || || ||||| ||| | |||||| Sbjct 22115 -AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTC 22165 >seq732 Length=22061 Score = 143 bits (158), Expect = 3e-29 Identities = 532/823 (65%), Gaps = 17/823 (2%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||| ||||| ||||| || | || | Sbjct 8666 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAG 8725 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | |||||||||||||||| | |||| | | ||| || | | Sbjct 8726 ATCATGTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAG 8785 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | | || || |||| || |||||||||||| |||| | | |||||||| || Sbjct 8786 TACAACAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCA 8845 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | | || |||| |||| | ||| | | ||| || ||| || || || Sbjct 8846 ATCAGCTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGA 8905 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGT----CTATTGCGTAAAGT-CTTGAAGAGT 127513 | ||| | ||| | |||| | ||| | | | || | ||| | ||| | Sbjct 8906 ATGATCGTGTGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGAGG--- 8962 Query 127514 TCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 ||| ||||| || ||| | ||||| || || ||||| || |||||||||| Sbjct 8963 --CAC-GCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTG 9019 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 || || ||||||||||| |||||||||| ||| || |||| || || ||||| |||||| Sbjct 9020 AGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAG 9079 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTT-TGT 127692 || || || || || | || || || | || ||||| || | || | |||| || Sbjct 9080 AAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGG 9138 Query 127693 ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCG-ATACATGGGACGGTCTGGATCG 127751 || ||||||| | |||||| | || |||| | ||| | ||| |||| ||||| |||| Sbjct 9139 GTCGCACCACTTGAGCGCCCAAT-TGGCTTTCTTTCGAACACACGGGATGGTCTCAATCG 9197 Query 127752 CTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 127811 | | || | | ||| || | | ||||| |||||| | || ||||| |||| Sbjct 9198 CGCGCAGAAGGTGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAAT 9257 Query 127812 ATGTTTCGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGC 127871 | ||| ||||| ||||| | | ||| | | || || | || ||||| Sbjct 9258 AGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCG 9317 Query 127872 TTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACC 127931 | || || |||| | ||| || | | |||||| ||||| ||||| Sbjct 9318 GCACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGG 9377 Query 127932 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCC 127991 | ||||| || || || | || ||| || || | | ||||| || | ||| || || Sbjct 9378 CTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCC 9437 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| | |||||| | | |||| |||||| |||||||| Sbjct 9438 AGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCA 9480 >seq7156 Length=1532 Score = 105 bits (116), Expect = 8e-18 Identities = 248/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| || | | || | || || | ||| ||||| ||||| Sbjct 599 CGGTCAAAACGGCCTGGACGTAACAATGCTTTATCCAGCACATCTGCACGGTTAGTCGCA 540 Query 12762 GCGATGACAACGATGCCCGTCT-CGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 || || || | | ||| | | || | || || ||||||||||| || | || || Sbjct 539 GCAATCACGATCACGCCAGAATTCGCT-TCAAAACCATCCATCTCGACCAGCATCTGGTT 481 Query 12821 GATGGTTTGTTCACGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACC 12877 | || |||||||| ||||| || ||| | || ||||| |||| ||| || || Sbjct 480 CAATGTCTGTTCACGCTCATCGTTACCGCCGCCAGTACCA---GCACCGCGATGACGGCC 424 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAA 12937 || ||||| || || || || || |||||||| ||| ||||| ||| |||||| Sbjct 423 AACCGCGTCGATCTCATCGATAAATACGATACAAGGTGCATTTTTCTTGGCGTTTTCAAA 364 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 12997 || || ||||| | | ||||| || || |||||||| || ||||| | | |||| Sbjct 363 CATGTCACGCACACGCGCAGCACCCACGCCGACAAACATTTCTACAAAGTCAGAACCGGA 304 Query 12998 ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 || |||||| || |||| |||||| || || || ||||| || ||||| || || Sbjct 303 GATGCTGAAGAAGGGCACTTTGGCTTCACCGGCAATCGCACGGGCCAGCAGGGTTTTACC 244 Query 13058 CGTCCCTGG 13066 || || || Sbjct 243 AGTACCCGG 235 >seq8805 Length=1264 Score = 104 bits (114), Expect = 3e-17 Identities = 199/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || |||||||| || || || || | ||| | ||||| |||||| ||||||||| || Sbjct 934 CGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATATCAGGGCGGTTCGTTGCA 875 Query 12762 GCGATGACAA-CGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 || || |||| || || | | || || ||||| ||||| ||| ||| | || || Sbjct 874 GCAATCACAATCGTTGAGTGATT-GTCTTCAAAGCCGTCCATTTCAATCAGCAACTGGTT 816 Query 12821 GATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACC 12877 | ||||||||| || ||||||| ||| | | ||||| |||| || || ||| Sbjct 815 AAGGGTTTGTTCGCGCTCATCATGACCGCCGCCCATACCT---GCACCACGCTGACGACC 759 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAA 12937 ||||||||||||||||| || || | | ||| || || || ||| ||||| Sbjct 758 AACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTGGCCTGGTCAAA 699 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | || || |||| ||||| |||||||||||||| || ||||| Sbjct 698 CAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAA 651 >seq4369 Length=2652 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || |||||||| || || | |||||| ||||| || ||||||||| | ||| || || Sbjct 2599 CCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCTGGCATTAAACCACGTTTT 2540 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||||||| |||| | ||| || | || |||||||| ||||||||||| | ||| Sbjct 2539 TTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATCCCCTCCACCGCCATGAAG 2480 Query 127658 GCAAATAGACGCTCGGCAAA 127677 |||| |||||||| ||||| Sbjct 2479 GCAATGAGACGCTCAGCAAA 2460 >seq7774 Length=1414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 115552 TTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATT 115611 |||| || ||||||||||| || || ||||| || | |||||| |||| | |||||| Sbjct 1107 TTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAAATGCATG 1166 Query 115612 GAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCG 115671 |||| || ||||||| | || |||||||| || || || | || || ||| | Sbjct 1167 GAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGACTGACAG 1226 Query 115672 ATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACA 115731 || ||| || || || || |||||||| |||| | | |||||||||||| || Sbjct 1227 ATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTCCCAGACG 1286 Query 115732 GTTCTGTAGA 115741 ||| |||||| Sbjct 1287 GTTTTGTAGA 1296 >seq7203 Length=1522 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||| | || || ||||| || || | ||||| ||||| ||||| Sbjct 971 GCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAAGACCC 1030 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||| || || ||||||||||| |||| || |||||||| |||||||| || Sbjct 1031 GGCATTAAACCACGTTTTTTCAACCAGAATATCGAGCAGAATGAGCCTGAGAAGAAAATA 1090 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTC 127671 || || ||| || || || || || || || Sbjct 1091 CCTTCTACAACGGCAAATGCTAACAGGCGGTC 1122 >seq3 Length=134081 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 177728 GAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTG 177787 ||| ||||||| | | ||||||||||||||||| ||||||||| | ||||||| Sbjct 56172 GAGAAGATGTTGGCGAGTTTGGCACCGTAGCCATTCCGTCCACCAGTCGTCTTCTTCTTC 56231 Query 177788 TTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTGG 177837 ||||| || |||| | | |||||| | |||||||||| | ||||| || Sbjct 56232 TTGTCGTCAAAGTTACTGCCCGTGAGCAAGTGACCAAAGATCAGTTCGGG 56281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613414514399760