Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq732 233 2e-56
seq151 127 2e-24
seq1324 95.1 1e-14
seq373 95.1 1e-14
>seq732
Length=22061
Score = 233 bits (258), Expect = 2e-56
Identities = 426/613 (69%), Gaps = 18/613 (3%)
Strand=Plus/Plus
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
|||| | ||| |||||||| |||| |||||| || | |||||| ||||| ||
Sbjct 8955 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 9014
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| | | ||| |||||||| ||||| || || |||||||| || | | ||| |||||
Sbjct 9015 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 9074
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
| ||||| | ||| ||||| | || || |||| ||| ||||| || ||| | | |||
Sbjct 9075 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTT 9134
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTC 133124
| || ||| |||||||| | ||| ||||||| || ||||| || || ||
Sbjct 9135 GTGGGTCGCACCACTTGAGCGCCCAATTGGC--TTTCTTTCGAACACACGGGATGGTCTC 9192
Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC----ACGTAGGTGTCGATGA 133180
|| ||| || | || | | || |||| | | | | ||| ||||| ||||
Sbjct 9193 AATCGCGCGCAGAA---GGTGATCCTTCTCCGTCGC-CTCTTTAATGTACGTGTCAATGA 9248
Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240
| |||||| | ||||||||| | ||| || || ||||| || ||||| ||||||||||
Sbjct 9249 GCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACC 9308
Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGAT 133298
| || || ||| |||||||| | || ||| | || | ||||||| ||||| || ||
Sbjct 9309 GAGCTTCCGGCACTTGCACTTCAT-TGCTAAA-GTTCATGGCCAGATTCTCGTTCACAAT 9366
Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358
||| || ||||| || || ||||| ||||| |||||||| || || ||||| ||||| |
Sbjct 9367 GCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGT 9426
Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACG 133417
| | | ||||||| | | | | || | || ||| | |||||| | ||||| ||||
Sbjct 9427 GAGGTTCGCCCAGTC-CTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACG 9485
Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477
| || || || || |||||||| ||||| ||| | ||| || ||||| | |||||
Sbjct 9486 AAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAA 9545
Query 133478 ACCGGCGGGGGTT 133490
| ||| ||||||
Sbjct 9546 AGCGGTTGGGGTT 9558
>seq151
Length=51439
Score = 127 bits (140), Expect = 2e-24
Identities = 171/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || ||| | || || || || ||||| | ||||| ||| |
Sbjct 38503 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38444
Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358
| ||| | || || | | || | || |||| ||||| ||||| || |||||| |
Sbjct 38443 TCTGACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTG 38386
Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418
|||| |||||||| || | || ||||| |||||||| |||| ||||| || | |||||
Sbjct 38385 ACCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACT 38326
Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||||| ||||| |||||||||| ||||||| || || | || |||
Sbjct 38325 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38273
Score = 113 bits (124), Expect = 5e-20
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||| | || || || || || || | ||||| ||| | |
Sbjct 38272 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATTACGCTGGACGTGGAGCCGTCT 38213
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
||| | || || | | || | || |||| ||||| ||||| || |||||| ||||
Sbjct 38212 GACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 38155
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| |||||||| || | || ||||| |||||||| |||| || || || | |||||||
Sbjct 38154 AGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTACA 38095
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||| ||||| |||||||||| ||||||| || || | || |||
Sbjct 38094 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38045
>seq1324
Length=13147
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||| | || ||||| || ||||| | ||||| ||| | ||
Sbjct 2293 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2234
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||||| | | | | || | || || | || || || || ||||| | |||||
Sbjct 2233 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2174
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| || ||||| |||| ||||| ||| |||||||||
Sbjct 2173 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2114
Query 38424 ATCCAAAAGG 38433
||||||||||
Sbjct 2113 ATCCAAAAGG 2104
>seq373
Length=42858
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|||||||| | ||||| ||||| ||||| | ||| ||||| ||||| || || | ||
Sbjct 34325 GGAATTCCGCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTCGT 34266
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465
|| || |||||||||||||| ||||| |||||||||| ||||||| ||| || |
Sbjct 34265 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGTCTGCGT 34206
Query 38466 GGCGG 38470
|||||
Sbjct 34205 GGCGG 34201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500097236394240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |