Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq732 233 2e-56 seq151 127 2e-24 seq1324 95.1 1e-14 seq373 95.1 1e-14 >seq732 Length=22061 Score = 233 bits (258), Expect = 2e-56 Identities = 426/613 (69%), Gaps = 18/613 (3%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | ||| |||||||| |||| |||||| || | |||||| ||||| || Sbjct 8955 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 9014 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||| |||||||| ||||| || || |||||||| || | | ||| ||||| Sbjct 9015 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 9074 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | ||| ||||| | || || |||| ||| ||||| || ||| | | ||| Sbjct 9075 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTT 9134 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTC 133124 | || ||| |||||||| | ||| ||||||| || ||||| || || || Sbjct 9135 GTGGGTCGCACCACTTGAGCGCCCAATTGGC--TTTCTTTCGAACACACGGGATGGTCTC 9192 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC----ACGTAGGTGTCGATGA 133180 || ||| || | || | | || |||| | | | | ||| ||||| |||| Sbjct 9193 AATCGCGCGCAGAA---GGTGATCCTTCTCCGTCGC-CTCTTTAATGTACGTGTCAATGA 9248 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | |||||| | ||||||||| | ||| || || ||||| || ||||| |||||||||| Sbjct 9249 GCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACC 9308 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGAT 133298 | || || ||| |||||||| | || ||| | || | ||||||| ||||| || || Sbjct 9309 GAGCTTCCGGCACTTGCACTTCAT-TGCTAAA-GTTCATGGCCAGATTCTCGTTCACAAT 9366 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 ||| || ||||| || || ||||| ||||| |||||||| || || ||||| ||||| | Sbjct 9367 GCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGT 9426 Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACG 133417 | | | ||||||| | | | | || | || ||| | |||||| | ||||| |||| Sbjct 9427 GAGGTTCGCCCAGTC-CTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACG 9485 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477 | || || || || |||||||| ||||| ||| | ||| || ||||| | ||||| Sbjct 9486 AAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAA 9545 Query 133478 ACCGGCGGGGGTT 133490 | ||| |||||| Sbjct 9546 AGCGGTTGGGGTT 9558 >seq151 Length=51439 Score = 127 bits (140), Expect = 2e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||| | || || || || ||||| | ||||| ||| | Sbjct 38503 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38444 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | || || | | || | || |||| ||||| ||||| || |||||| | Sbjct 38443 TCTGACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTG 38386 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| |||||||| || | || ||||| |||||||| |||| ||||| || | ||||| Sbjct 38385 ACCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACT 38326 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||||||||| ||||||| || || | || ||| Sbjct 38325 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38273 Score = 113 bits (124), Expect = 5e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || || || || || || | ||||| ||| | | Sbjct 38272 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATTACGCTGGACGTGGAGCCGTCT 38213 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | || || | | || | || |||| ||||| ||||| || |||||| |||| Sbjct 38212 GACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 38155 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | |||||||| || | || ||||| |||||||| |||| || || || | ||||||| Sbjct 38154 AGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTACA 38095 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| ||||||| || || | || ||| Sbjct 38094 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38045 >seq1324 Length=13147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || ||||| || ||||| | ||||| ||| | || Sbjct 2293 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2234 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | || || | || || || || ||||| | ||||| Sbjct 2233 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2174 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| || ||||| |||| ||||| ||| ||||||||| Sbjct 2173 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2114 Query 38424 ATCCAAAAGG 38433 |||||||||| Sbjct 2113 ATCCAAAAGG 2104 >seq373 Length=42858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 |||||||| | ||||| ||||| ||||| | ||| ||||| ||||| || || | || Sbjct 34325 GGAATTCCGCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTCGT 34266 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| |||||||||| ||||||| ||| || | Sbjct 34265 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGTCTGCGT 34206 Query 38466 GGCGG 38470 ||||| Sbjct 34205 GGCGG 34201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500097236394240