Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq5177 111 2e-19 >seq5177 Length=2144 Score = 111 bits (122), Expect = 2e-19 Identities = 197/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 42843 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTT 42902 || || || ||||| ||||||| || || ||||||| |||| | |||||||| Sbjct 37 GTGGCGCGGTATGACCAGCAGAAATACCCGGTATTCGAAAAACTGATCGAGAAACAACTG 96 Query 42903 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42962 || |||||||||||||||||||| || ||| |||| |||||| | ||| Sbjct 97 TCATTCTTCTGGCGTCCGGAAGAGGTGGATGTGTCACAGGACCGTTCTGATTATCAGGGC 156 Query 42963 CTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGAT 43022 || || || |||||||| ||| ||| ||||| |||| || || ||| | ||| Sbjct 157 CTGCCCGAGCATGAAAAGCACATCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGAT 216 Query 43023 ACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGATG--TGAGCA 43080 |||| ||||| ||| | |||||| | || || | || | | | | || |||| | Sbjct 217 TCCATCCAGGGCCGTAGCCCTAACGTGGCTTTGCTACCGCTGGTGT-CATTGCCTGAG-A 274 Query 43081 TGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCAC 43124 | ||||||||||| ||||| ||||||||| || ||||| ||| Sbjct 275 TTGAAACCTGGATAGAAACCTGGGCGTTTTCCGAGACCATACAC 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557982889997760