Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_014036.1
Length=174436
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 111 2e-19
>seq5177
Length=2144
Score = 111 bits (122), Expect = 2e-19
Identities = 197/284 (69%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 42843 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTT 42902
|| || || ||||| ||||||| || || ||||||| |||| | ||||||||
Sbjct 37 GTGGCGCGGTATGACCAGCAGAAATACCCGGTATTCGAAAAACTGATCGAGAAACAACTG 96
Query 42903 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42962
|| |||||||||||||||||||| || ||| |||| |||||| | |||
Sbjct 97 TCATTCTTCTGGCGTCCGGAAGAGGTGGATGTGTCACAGGACCGTTCTGATTATCAGGGC 156
Query 42963 CTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGAT 43022
|| || || |||||||| ||| ||| ||||| |||| || || ||| | |||
Sbjct 157 CTGCCCGAGCATGAAAAGCACATCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGAT 216
Query 43023 ACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGATG--TGAGCA 43080
|||| ||||| ||| | |||||| | || || | || | | | | || |||| |
Sbjct 217 TCCATCCAGGGCCGTAGCCCTAACGTGGCTTTGCTACCGCTGGTGT-CATTGCCTGAG-A 274
Query 43081 TGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCAC 43124
| ||||||||||| ||||| ||||||||| || ||||| |||
Sbjct 275 TTGAAACCTGGATAGAAACCTGGGCGTTTTCCGAGACCATACAC 318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557982889997760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |