Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq5730 100 1e-16 >seq5730 Length=1907 Score = 100 bits (110), Expect = 1e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 53309 GACGACCAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGC 53366 || || ||| ||| ||||||| ||||| | ||||||| | || || || ||| Sbjct 1557 GAAGAACAGGCGCATGCGCAGTTGCGCA--ATATCGCCGCCGTCCCGTTTGTCGGGCCGT 1500 Query 53367 ATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCC 53426 |||||| ||||||| || | ||| | || |||||| | || ||| ||||||||| Sbjct 1499 GGGTGGCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATCC 1440 Query 53427 CGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCG 53486 ||||| || || | |||||||| || || ||||| ||||| |||||||||||| || Sbjct 1439 CGACCCGCGGTGCCATCATCCCGGCCGCGGTTGGCGTGGATATCGGCTGCGGCATGGCCG 1380 Query 53487 CAGCCCGCACCAC 53499 | | |||||||| Sbjct 1379 CGGTGCGCACCAC 1367 Score = 89.7 bits (98), Expect = 2e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 53696 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 53755 ||| |||||||||||||||||||||| ||||||||||| || || || ||| | |||| Sbjct 1161 CAGATCGGCACGCTGGGCGGCGGCAACCACTTCATCGAACTCTGTCTGGACGAGACCGAC 1102 Query 53756 CGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCG 53807 |||||| || | ||||| ||| ||||||||| ||| ||| ||||| Sbjct 1101 GCGGTGTGGGTGATGTTGCACAGCGGCTCGCGTGGCACCGGCAACCTGATCG 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190564645997920