Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_014458.1
Length=59598
Score E
Sequences producing significant alignments: (Bits) Value
seq5730 100 1e-16
>seq5730
Length=1907
Score = 100 bits (110), Expect = 1e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 53309 GACGACCAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGC 53366
|| || ||| ||| ||||||| ||||| | ||||||| | || || || |||
Sbjct 1557 GAAGAACAGGCGCATGCGCAGTTGCGCA--ATATCGCCGCCGTCCCGTTTGTCGGGCCGT 1500
Query 53367 ATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCC 53426
|||||| ||||||| || | ||| | || |||||| | || ||| |||||||||
Sbjct 1499 GGGTGGCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATCC 1440
Query 53427 CGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCG 53486
||||| || || | |||||||| || || ||||| ||||| |||||||||||| ||
Sbjct 1439 CGACCCGCGGTGCCATCATCCCGGCCGCGGTTGGCGTGGATATCGGCTGCGGCATGGCCG 1380
Query 53487 CAGCCCGCACCAC 53499
| | ||||||||
Sbjct 1379 CGGTGCGCACCAC 1367
Score = 89.7 bits (98), Expect = 2e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 53696 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 53755
||| |||||||||||||||||||||| ||||||||||| || || || ||| | ||||
Sbjct 1161 CAGATCGGCACGCTGGGCGGCGGCAACCACTTCATCGAACTCTGTCTGGACGAGACCGAC 1102
Query 53756 CGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCG 53807
|||||| || | ||||| ||| ||||||||| ||| ||| |||||
Sbjct 1101 GCGGTGTGGGTGATGTTGCACAGCGGCTCGCGTGGCACCGGCAACCTGATCG 1050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190564645997920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |