Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq5177 120 4e-22 seq7821 114 2e-20 seq3648 84.2 3e-11 >seq5177 Length=2144 Score = 120 bits (132), Expect = 4e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 127055 CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTT 127114 ||||||||| | ||||||| |||||||||||||||||| |||||||| ||||| Sbjct 702 CTGGGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTT 643 Query 127115 GCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACG 127174 ||||||||||| ||| |||||||| | ||| | |||||||||||| || || || || Sbjct 642 GCCTTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCG 583 Query 127175 AATCGCTTCCA 127185 |||||||||| Sbjct 582 GATCGCTTCCA 572 >seq7821 Length=1406 Score = 114 bits (126), Expect = 2e-20 Identities = 219/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 127992 CGGGACGTAATAAGTGTTTGCACTGATCATCTGATCCACAAACTTCTGCATGATAGCGAC 128051 |||| |||| | ||||| ||| ||| ||| || ||||||||||||||||| | || Sbjct 502 CGGGTCGTAGTTGGTGTTGGCAGAAATCGACTGGTCGACAAACTTCTGCATGATGCCCAC 561 Query 128052 AATATCGAGGTAACCCTTCATGCCACGTTTAGCCATCGCCCAAGCGGTTTCATACTCGCT 128111 | ||||||||||| ||| |||| || | || ||| | |||| | Sbjct 562 CAGTCTGAGGTAACCCT-CATT----GTTTGGCATTTTCCACAGCAACTGG-TACTGGTC 615 Query 128112 ACCAAGCATTTCTACCTCTGGCACTAGCTGATTAAACACACCATCTTTCGATTGCTTGGT 128171 || || || | ||| ||||||| ||| | | ||| ||||| ||||||||| Sbjct 616 ACGCAGGCGGTCGATCTCAGGCACTACCTGGCGCAGGATACCGTCTTTGGATTGCTTGAC 675 Query 128172 GCTCACTAGGCCACGCGGTGGCTCGATACCGTTTGTGCTGTTGGTAATTTGGCTAGAACT 128231 | || ||||| |||||||| || ||||| || ||| ||||| || ||||| || | Sbjct 676 GGATACCAGGCCGCGCGGTGGTTCAATACCATTGGTGGCGTTGGCGATCTGGCTGGAGGT 735 Query 128232 TTCACACGGCATAAACGCGCTCAGTGTGTCATTGCGCATACCGTACTTTTTAATCTCGCC 128291 ||| | ||||| ||||| |||| ||| ||||||| || | |||| ||||||| Sbjct 736 TTCTGATGGCATTAACGCAGTCAGGGTGGAGTTGCGCAGGCCATCTTTTTGAATCTCGGT 795 Query 128292 ACGTAGCCATTCCCAATCCA 128311 ||| || | ||||||||||| Sbjct 796 ACGCAGGCTTTCCCAATCCA 815 >seq3648 Length=3382 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 936 TGGTGGGCCGTGATGGATTCGAACCATCGACCAAAAGATTAAAAGTCTTCTGCTCTACCG 877 Query 191922 ACTAAGCTAACGGC 191935 ||| |||||||||| Sbjct 876 ACTGAGCTAACGGC 863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720620715775680