Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3384 107 8e-18 seq1795 104 9e-17 >seq3384 Length=3776 Score = 107 bits (118), Expect = 8e-18 Identities = 255/378 (67%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 451250 GAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309 ||||||||| | ||| || | |||| |||||| | || ||| |||| | || Sbjct 3711 GAAATTTCAGCAATGATTTTGTCTAAGCTGAAAGCAGATGCGGAAGCATATCTCGGACAG 3652 Query 451310 CCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369 ||||| || || || || ||||| || || || || ||||||||||| || || || ||| Sbjct 3651 CCAGTAACAGAAGCTGTGATTACAGTACCTGCATACTTCAATGATGCGCAGCGTCAGGCA 3592 Query 451370 ACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429 ||||| ||||| || | || || || | | || | || ||||||||||| ||||| Sbjct 3591 ACTAAGGATGCTGGTAAGATCGCAGGACTTGAAGTACGACGTATTATTAATGAGCCTACT 3532 Query 451430 GCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTA 451489 ||||| || || || || || ||| || || || || | |||| || | |||| Sbjct 3531 GCAGCAGCGCTTGCCTACGGTCTA-GATAAGCAGAAAGATCAGA--AAGTAGCTATT--- 3478 Query 451490 GTATTTGATTTTGGTGGAGGAAC--TC-ATGAT--ACTTCT-GTACTTTCAATTGAAGAT 451543 | ||| ||||| ||||| || || | | | | |||| | |||| |||| Sbjct 3477 ---TATGACTTTGGAGGAGGTACCTTCGACGTTTCAATTCTAGAGATTTCTTCTGAA--- 3424 Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || |||||||||| | || ||||| || || ||||| ||||| || ||| | ||| Sbjct 3423 GGAACATTTGAAGTACTTTCTACAAATGGAGACACGCATCTTGGAGGAGATGATTTCGAT 3364 Query 451604 AATGCAATTGTGGAATGG 451621 | |||| | |||||| Sbjct 3363 ACAAAAATTATTGAATGG 3346 >seq1795 Length=8984 Score = 104 bits (114), Expect = 9e-17 Identities = 284/427 (67%), Gaps = 6/427 (1%) Strand=Plus/Plus Query 452069 GATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATG 452128 ||| ||||| | | |||||| ||||| | || |||||| | || || || || ||| | Sbjct 2357 GATCTTCTGCTGTTGGATGTAGCACCTTTGTCGCTTGGATTGGAGACGGCAGGCGGAGTC 2416 Query 452129 ATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGT 452188 ||||| || | ||| ||| ||| | | ||| || ||| || |||| Sbjct 2417 ATGACCAAGCTCATTCCACGCAACACTACGGTCCCTGCAAAGAAGTCGCAGTCATTCTCG 2476 Query 452189 ACAGCAAGT-GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247 || | | | ||||| || || |||||| || || ||||||||||| || || || || Sbjct 2477 AC-GTATGCCGATAATCAGCCTGGTGTACTGATCCAGGTGTTTGAAGGTGAGCGGGCGAT 2535 Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA-AACATTCCTCCTATGCCAA 452306 |||||| ||||| || ||||| | |||| ||| | |||||| |||||||| Sbjct 2536 GACACGCGATAACCATCTTCTAGGCAAGTTTA-GCTTGGACGGCATTCCGCCTATGCCGC 2594 Query 452307 GGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGA 452366 | || ||||| ||||| | || | ||| || |||| ||||| ||||| || ||| Sbjct 2595 GTGGTGTGCCTCAGATTGACGTCACATTTGACGTGGATGTGAATGGCATTCTAAACGTGT 2654 Query 452367 GTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAAC 452425 || || || || || | || ||| |||| || || || ||||| ||||||||| Sbjct 2655 CAGCCGTCGAGAAGTCGACGGGGAAA-GAGAACAAGATCACGATTACAAATGATAAAGGT 2713 Query 452426 CGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGAT 452485 || |||| | | || ||||| ||||| | || || || | | |||||| | Sbjct 2714 CGGCTATCACAGGCCGAGATTGATCGCATGGTGAACGATGCGGAGACGTACAAGGACCAA 2773 Query 452486 GATGAAC 452492 ||||||| Sbjct 2774 GATGAAC 2780 Score = 84.2 bits (92), Expect = 9e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278 ||||||||| || |||| || ||||| || || || || ||||| || | || || Sbjct 1510 TAAAGGTGAGACCAAAAGGTTCCAGCCTGAGGAGATCTCGTCCATGGTGCTGATCAAGAT 1569 Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338 | || | || ||| |||||||| | ||| | ||||||| | || || || Sbjct 1570 GCGTGAGATTGCGGAAGCTTATATTGGCAAGCAAGTGAGGAATGCAGTGGTGACGGTCCC 1629 Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398 || || ||||| || | ||||| || || || |||||||| ||| ||||||||||| Sbjct 1630 TGCATACTTCAACGACTCGCAACGTCAGGCGACCAAAGATGCTGGAGCCATTGCTGGTTT 1689 Query 451399 AAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || || || || ||||| || || || || || || || Sbjct 1690 GAACGTGCTGCGTATTATCAACGAGCCAACGGCTGCCGC 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975412456301288