Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3384 107 8e-18
seq1795 104 9e-17
>seq3384
Length=3776
Score = 107 bits (118), Expect = 8e-18
Identities = 255/378 (67%), Gaps = 18/378 (5%)
Strand=Plus/Minus
Query 451250 GAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309
||||||||| | ||| || | |||| |||||| | || ||| |||| | ||
Sbjct 3711 GAAATTTCAGCAATGATTTTGTCTAAGCTGAAAGCAGATGCGGAAGCATATCTCGGACAG 3652
Query 451310 CCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369
||||| || || || || ||||| || || || || ||||||||||| || || || |||
Sbjct 3651 CCAGTAACAGAAGCTGTGATTACAGTACCTGCATACTTCAATGATGCGCAGCGTCAGGCA 3592
Query 451370 ACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429
||||| ||||| || | || || || | | || | || ||||||||||| |||||
Sbjct 3591 ACTAAGGATGCTGGTAAGATCGCAGGACTTGAAGTACGACGTATTATTAATGAGCCTACT 3532
Query 451430 GCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTA 451489
||||| || || || || || ||| || || || || | |||| || | ||||
Sbjct 3531 GCAGCAGCGCTTGCCTACGGTCTA-GATAAGCAGAAAGATCAGA--AAGTAGCTATT--- 3478
Query 451490 GTATTTGATTTTGGTGGAGGAAC--TC-ATGAT--ACTTCT-GTACTTTCAATTGAAGAT 451543
| ||| ||||| ||||| || || | | | | |||| | |||| ||||
Sbjct 3477 ---TATGACTTTGGAGGAGGTACCTTCGACGTTTCAATTCTAGAGATTTCTTCTGAA--- 3424
Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603
|| |||||||||| | || ||||| || || ||||| ||||| || ||| | |||
Sbjct 3423 GGAACATTTGAAGTACTTTCTACAAATGGAGACACGCATCTTGGAGGAGATGATTTCGAT 3364
Query 451604 AATGCAATTGTGGAATGG 451621
| |||| | ||||||
Sbjct 3363 ACAAAAATTATTGAATGG 3346
>seq1795
Length=8984
Score = 104 bits (114), Expect = 9e-17
Identities = 284/427 (67%), Gaps = 6/427 (1%)
Strand=Plus/Plus
Query 452069 GATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATG 452128
||| ||||| | | |||||| ||||| | || |||||| | || || || || ||| |
Sbjct 2357 GATCTTCTGCTGTTGGATGTAGCACCTTTGTCGCTTGGATTGGAGACGGCAGGCGGAGTC 2416
Query 452129 ATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGT 452188
||||| || | ||| ||| ||| | | ||| || ||| || ||||
Sbjct 2417 ATGACCAAGCTCATTCCACGCAACACTACGGTCCCTGCAAAGAAGTCGCAGTCATTCTCG 2476
Query 452189 ACAGCAAGT-GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247
|| | | | ||||| || || |||||| || || ||||||||||| || || || ||
Sbjct 2477 AC-GTATGCCGATAATCAGCCTGGTGTACTGATCCAGGTGTTTGAAGGTGAGCGGGCGAT 2535
Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA-AACATTCCTCCTATGCCAA 452306
|||||| ||||| || ||||| | |||| ||| | |||||| ||||||||
Sbjct 2536 GACACGCGATAACCATCTTCTAGGCAAGTTTA-GCTTGGACGGCATTCCGCCTATGCCGC 2594
Query 452307 GGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGA 452366
| || ||||| ||||| | || | ||| || |||| ||||| ||||| || |||
Sbjct 2595 GTGGTGTGCCTCAGATTGACGTCACATTTGACGTGGATGTGAATGGCATTCTAAACGTGT 2654
Query 452367 GTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAAC 452425
|| || || || || | || ||| |||| || || || ||||| |||||||||
Sbjct 2655 CAGCCGTCGAGAAGTCGACGGGGAAA-GAGAACAAGATCACGATTACAAATGATAAAGGT 2713
Query 452426 CGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGAT 452485
|| |||| | | || ||||| ||||| | || || || | | |||||| |
Sbjct 2714 CGGCTATCACAGGCCGAGATTGATCGCATGGTGAACGATGCGGAGACGTACAAGGACCAA 2773
Query 452486 GATGAAC 452492
|||||||
Sbjct 2774 GATGAAC 2780
Score = 84.2 bits (92), Expect = 9e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278
||||||||| || |||| || ||||| || || || || ||||| || | || ||
Sbjct 1510 TAAAGGTGAGACCAAAAGGTTCCAGCCTGAGGAGATCTCGTCCATGGTGCTGATCAAGAT 1569
Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338
| || | || ||| |||||||| | ||| | ||||||| | || || ||
Sbjct 1570 GCGTGAGATTGCGGAAGCTTATATTGGCAAGCAAGTGAGGAATGCAGTGGTGACGGTCCC 1629
Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398
|| || ||||| || | ||||| || || || |||||||| ||| |||||||||||
Sbjct 1630 TGCATACTTCAACGACTCGCAACGTCAGGCGACCAAAGATGCTGGAGCCATTGCTGGTTT 1689
Query 451399 AAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
|| || || || ||||| || || || || || || ||
Sbjct 1690 GAACGTGCTGCGTATTATCAACGAGCCAACGGCTGCCGC 1728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975412456301288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |