Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1795 217 1e-50 seq3384 89.7 4e-12 seq432 89.7 4e-12 >seq1795 Length=8984 Score = 217 bits (240), Expect = 1e-50 Identities = 936/1460 (64%), Gaps = 31/1460 (2%) Strand=Plus/Minus Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 || ||| ||||| || || || || ||| || || || || |||| | ||| || Sbjct 2707 ATCATTTGTAATCGTGATCTTGTTCTCTTTCCCCGTCGACTTCTCGACGGCTGACACGTT 2648 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 ||||| ||||| |||||| ||||||||||| ||||| ||||| || || | | | Sbjct 2647 TAGAATGCCATTCACATCCACGTCAAATGTGACGTCAATCTGAGGCACACCACGCGGCAT 2588 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 ||| || || || ||||| |||| | || ||| || ||||| || | || Sbjct 2587 AGGCGGAATGCCGTCCAAGCTAAACTTGCCTAGAAGATGGTTATCGCGTGTCATCGCCCG 2528 Query 517390 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT- 517447 ||||| || || | ||||| |||| | ||| |||||||| | ||| || | ||| Sbjct 2527 CTCACCTTCAAACACCTGGATCAGTA-CACCAGGCTGATTATCGGCATACGTCGAGAATG 2469 Query 517448 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507 ||| | || ||| || ||| || ||||| | ||| | |||||||| | || Sbjct 2468 ACTGCGACTTCTTTGCAGGGACC-GTAGTGTTGCGTGGAATGAGCTTGGTCATGACTCCG 2410 Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567 ||||| || || || ||||| || | ||| | ||||| | || | || || || || Sbjct 2409 CCTGCCGTCTCCAATCCAAGCGACAAAGGTGCTACATCCAACAGCAGAAGATCCTGCAGC 2350 Query 517568 TTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 || | | ||| || ||||| || ||||| | | || ||||| || ||| Sbjct 2349 TTGGAAGAGGCCCCACCGCCACTCAGAATTGCAGCTTGGACGGTCGCTCCATACGCCACA 2290 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684 ||||| || ||||||| | | | || || || || || || |||| || | Sbjct 2289 GCTTCGTCCGGATTAATCGACTTAAATAATTCCTTTCCGTTAAAGAAATCGATCAGCAAC 2230 Query 517685 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| ||||| || || |||| || || || || | || || |||||||| | | Sbjct 2229 TGTTGCACCTTTGGGATGCGAGTGGAGCCACCGACCAGGACGATCTCATGCACTTCGCCT 2170 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 || ||| || || || ||||||| | || || || | | | ||| || Sbjct 2169 TTCGACAGCTTCGAGTCGCGCAAAACTTGGGCGACTGGCTCCATTGTCTTGCGAAAGAAA 2110 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || | || || || || ||| | |||| |||| || || |||| || || || Sbjct 2109 TCGGCGCATAGATCCTCAAATCTCGCTCGCGTAATGGTCGTGTTGAAATCGATGCCGTCA 2050 Query 517865 AACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 517923 | | ||||||| ||||| ||| | ||| | |||| || | | || || || || Sbjct 2049 AGAAGCGAATCAATCTCAAT-GTACGCTTGCGCAGAAGTGGACAAGGTCCGCTTGGCTCG 1991 Query 517924 TTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTA 517981 || ||||| || | |||| || | ||| | || || | ||| |||| | | Sbjct 1990 CTCGCATGCCGTACGCAGTCGACGCAGGGCACGT--TGGTTCAACGTCATATCTTTGCGA 1933 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCAC 518039 | || | |||||| || ||| | ||| | ||||| || || ||||| ||||||| Sbjct 1932 TGCTTACGCTTGAACTCGGAGACAAA--ATGATCCACAAGGCGGTTGTCAAAGTCTTCAC 1875 Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099 | ||||| | || | || | || ||| | || | || | || || |||| || Sbjct 1874 CGCCCAAATGCGTGTCACCGGCAGTGGCTTTCACCTCAAAGATGCCGTCCTCAATGCTCA 1815 Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159 | || | || ||| || || || |||| ||| || || || ||||| ||| | Sbjct 1814 ACAGCGACACGTCAAACGTGCCGCCGCCCAGATCGAAGATTAGCACATTGTGTTCGCCGC 1755 Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 | | | || || || || || || | || ||||| ||||| || || ||||| | || Sbjct 1754 CCT---TCTTGTCCAGGCCGTAGGCGATCGCGGCAGCCGTTGGCTCGTTGATAATACGCA 1698 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 || || | ||||||||| ||| |||||||| || || || | ||| || ||||| | Sbjct 1697 GCACGTTCAAACCAGCAATGGCTCCAGCATCTTTGGTCGCCTGACGTTGCGAGTCGTTGA 1638 Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339 | |||||||| || || | || |||| | |||| || ||||||||||| || Sbjct 1637 AGTATGCAGGGACCGTCACCACTGCATTCCTCACTTGCTTGCCAATATAAGCTTCCGCAA 1578 Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGA 518397 | | ||| || | | | ||| || || || | || || |||| || |||| Sbjct 1577 TCTCACGCATCTTGATCAGCACCATGGACGAGATCTCCTCAGGCTGGAACCTT--TTGGT 1520 Query 518398 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT---AATAACTTTAAA 518454 ||| || | | ||||| | | ||||| | | || | | || || || Sbjct 1519 CTCACCTTTAAACTGCACTTCCACCTGAGGTTTGTCCGCCGAATCTCGAGTCACCTTGAA 1460 Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTT-TGG-TCATTAAAATCTCTACCAATTAAT 518512 ||||||| ||| || || || || ||||| ||| ||| ||| | | || || || Sbjct 1459 CGGCCAGTGTTTAATGTCCGACTG--CACTTCTGGATCAGAAAACTTGCGTCCGATCAAA 1402 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || ||||| || | || ||| || || || ||| |||| | || |||||||| Sbjct 1401 CGCTTGGCATCGAACACCGTGTTGTGTGCGTTCATAGCAACTTGGTTCTTCGCTGCATCA 1342 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 ||||||||| | |||| ||| ||||| | ||||| ||||| || ||||| || ||||| Sbjct 1341 CCAATCAGACGCTCTGACTCCGTAAACGCCACATACGATGGCGTCGTGCGGTTTCCTTGG 1282 Query 518633 TCATTCGCAATAATTTCAAC 518652 || ||||||||||| || || Sbjct 1281 TCGTTCGCAATAATCTCCAC 1262 >seq3384 Length=3776 Score = 89.7 bits (98), Expect = 4e-12 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 ||||| ||||| || |||| || || ||||| || ||||||||||| | || | | Sbjct 3503 TTATCTAGACCGTAGGCAAGCGCTGCTGCAGTAGGCTCATTAATAATACGTCGTACTTCA 3562 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || || || | || ||||| ||||| || || | || | ||| || || |||||| Sbjct 3563 AGTCCTGCGATCTTACCAGCATCCTTAGTTGCCTGACGCTGCGCATCATTGAAGTATGCA 3622 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGC-CGTTTG-TT 518345 || || ||||| || || || |||||| | || | ||| |||| | | | || || Sbjct 3623 GGTACTGTAATCACAGCTTCTGTTACTGGCTGTCCGAGATA--TGCTTCCGCATCTGCTT 3680 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTT 518375 ||| ||| |||||||||| |||||||| Sbjct 3681 TCAGCTTAGACAAAATCATTGCTGAAATTT 3710 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||| |||||| ||||| ||||||||||| || |||||||| || | || || | | Sbjct 3507 CTAGACCGTAGGCAAGCGCTGCTGCAGTAGGCTCATTAATAATACGTCGTACTTCAAGTC 3566 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | || || ||| ||| ||| |||||| || | ||| || ||||| || ||||| |||| Sbjct 3567 CTGCGATCTTACCAGCATCCTTAGTTGCCTGACGCTGCGCATCATTGAAGTATGCAGGTA 3626 Query 322359 CAGTAATAACTGCTT 322373 | ||||| || |||| Sbjct 3627 CTGTAATCACAGCTT 3641 >seq432 Length=31072 Score = 89.7 bits (98), Expect = 4e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||||||||| ||||| | || ||||||||||| || ||||| || | || |||||| Sbjct 14468 GGTAAAGAAGGACGTATCCGCGGTAATTTGATGGGCAAGCGTGTAGACTTTTCGGCACGT 14527 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966 || |||||||| |||| || |||||||| | | |||| || ||||||| Sbjct 14528 ACGGTTATTACCGCTGACCCGAATATTGCAATTGACCAAGTGGGCGTTCCTC 14579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780222652868716