Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1795 217 1e-50
seq3384 89.7 4e-12
seq432 89.7 4e-12
>seq1795
Length=8984
Score = 217 bits (240), Expect = 1e-50
Identities = 936/1460 (64%), Gaps = 31/1460 (2%)
Strand=Plus/Minus
Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269
|| ||| ||||| || || || || ||| || || || || |||| | ||| ||
Sbjct 2707 ATCATTTGTAATCGTGATCTTGTTCTCTTTCCCCGTCGACTTCTCGACGGCTGACACGTT 2648
Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329
||||| ||||| |||||| ||||||||||| ||||| ||||| || || | | |
Sbjct 2647 TAGAATGCCATTCACATCCACGTCAAATGTGACGTCAATCTGAGGCACACCACGCGGCAT 2588
Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389
||| || || || ||||| |||| | || ||| || ||||| || | ||
Sbjct 2587 AGGCGGAATGCCGTCCAAGCTAAACTTGCCTAGAAGATGGTTATCGCGTGTCATCGCCCG 2528
Query 517390 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT- 517447
||||| || || | ||||| |||| | ||| |||||||| | ||| || | |||
Sbjct 2527 CTCACCTTCAAACACCTGGATCAGTA-CACCAGGCTGATTATCGGCATACGTCGAGAATG 2469
Query 517448 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507
||| | || ||| || ||| || ||||| | ||| | |||||||| | ||
Sbjct 2468 ACTGCGACTTCTTTGCAGGGACC-GTAGTGTTGCGTGGAATGAGCTTGGTCATGACTCCG 2410
Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567
||||| || || || ||||| || | ||| | ||||| | || | || || || ||
Sbjct 2409 CCTGCCGTCTCCAATCCAAGCGACAAAGGTGCTACATCCAACAGCAGAAGATCCTGCAGC 2350
Query 517568 TTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624
|| | | ||| || ||||| || ||||| | | || ||||| || |||
Sbjct 2349 TTGGAAGAGGCCCCACCGCCACTCAGAATTGCAGCTTGGACGGTCGCTCCATACGCCACA 2290
Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684
||||| || ||||||| | | | || || || || || || |||| || |
Sbjct 2289 GCTTCGTCCGGATTAATCGACTTAAATAATTCCTTTCCGTTAAAGAAATCGATCAGCAAC 2230
Query 517685 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744
||| ||||| || || |||| || || || || | || || |||||||| | |
Sbjct 2229 TGTTGCACCTTTGGGATGCGAGTGGAGCCACCGACCAGGACGATCTCATGCACTTCGCCT 2170
Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804
|| ||| || || || ||||||| | || || || | | | ||| ||
Sbjct 2169 TTCGACAGCTTCGAGTCGCGCAAAACTTGGGCGACTGGCTCCATTGTCTTGCGAAAGAAA 2110
Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864
|| | || || || || ||| | |||| |||| || || |||| || || ||
Sbjct 2109 TCGGCGCATAGATCCTCAAATCTCGCTCGCGTAATGGTCGTGTTGAAATCGATGCCGTCA 2050
Query 517865 AACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 517923
| | ||||||| ||||| ||| | ||| | |||| || | | || || || ||
Sbjct 2049 AGAAGCGAATCAATCTCAAT-GTACGCTTGCGCAGAAGTGGACAAGGTCCGCTTGGCTCG 1991
Query 517924 TTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTA 517981
|| ||||| || | |||| || | ||| | || || | ||| |||| | |
Sbjct 1990 CTCGCATGCCGTACGCAGTCGACGCAGGGCACGT--TGGTTCAACGTCATATCTTTGCGA 1933
Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCAC 518039
| || | |||||| || ||| | ||| | ||||| || || ||||| |||||||
Sbjct 1932 TGCTTACGCTTGAACTCGGAGACAAA--ATGATCCACAAGGCGGTTGTCAAAGTCTTCAC 1875
Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099
| ||||| | || | || | || ||| | || | || | || || |||| ||
Sbjct 1874 CGCCCAAATGCGTGTCACCGGCAGTGGCTTTCACCTCAAAGATGCCGTCCTCAATGCTCA 1815
Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159
| || | || ||| || || || |||| ||| || || || ||||| ||| |
Sbjct 1814 ACAGCGACACGTCAAACGTGCCGCCGCCCAGATCGAAGATTAGCACATTGTGTTCGCCGC 1755
Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219
| | | || || || || || || | || ||||| ||||| || || ||||| | ||
Sbjct 1754 CCT---TCTTGTCCAGGCCGTAGGCGATCGCGGCAGCCGTTGGCTCGTTGATAATACGCA 1698
Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279
|| || | ||||||||| ||| |||||||| || || || | ||| || ||||| |
Sbjct 1697 GCACGTTCAAACCAGCAATGGCTCCAGCATCTTTGGTCGCCTGACGTTGCGAGTCGTTGA 1638
Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339
| |||||||| || || | || |||| | |||| || ||||||||||| ||
Sbjct 1637 AGTATGCAGGGACCGTCACCACTGCATTCCTCACTTGCTTGCCAATATAAGCTTCCGCAA 1578
Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGA 518397
| | ||| || | | | ||| || || || | || || |||| || ||||
Sbjct 1577 TCTCACGCATCTTGATCAGCACCATGGACGAGATCTCCTCAGGCTGGAACCTT--TTGGT 1520
Query 518398 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT---AATAACTTTAAA 518454
||| || | | ||||| | | ||||| | | || | | || || ||
Sbjct 1519 CTCACCTTTAAACTGCACTTCCACCTGAGGTTTGTCCGCCGAATCTCGAGTCACCTTGAA 1460
Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTT-TGG-TCATTAAAATCTCTACCAATTAAT 518512
||||||| ||| || || || || ||||| ||| ||| ||| | | || || ||
Sbjct 1459 CGGCCAGTGTTTAATGTCCGACTG--CACTTCTGGATCAGAAAACTTGCGTCCGATCAAA 1402
Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572
|| || ||||| || | || ||| || || || ||| |||| | || ||||||||
Sbjct 1401 CGCTTGGCATCGAACACCGTGTTGTGTGCGTTCATAGCAACTTGGTTCTTCGCTGCATCA 1342
Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632
||||||||| | |||| ||| ||||| | ||||| ||||| || ||||| || |||||
Sbjct 1341 CCAATCAGACGCTCTGACTCCGTAAACGCCACATACGATGGCGTCGTGCGGTTTCCTTGG 1282
Query 518633 TCATTCGCAATAATTTCAAC 518652
|| ||||||||||| || ||
Sbjct 1281 TCGTTCGCAATAATCTCCAC 1262
>seq3384
Length=3776
Score = 89.7 bits (98), Expect = 4e-12
Identities = 148/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
||||| ||||| || |||| || || ||||| || ||||||||||| | || | |
Sbjct 3503 TTATCTAGACCGTAGGCAAGCGCTGCTGCAGTAGGCTCATTAATAATACGTCGTACTTCA 3562
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
|| || || || | || ||||| ||||| || || | || | ||| || || ||||||
Sbjct 3563 AGTCCTGCGATCTTACCAGCATCCTTAGTTGCCTGACGCTGCGCATCATTGAAGTATGCA 3622
Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGC-CGTTTG-TT 518345
|| || ||||| || || || |||||| | || | ||| |||| | | | || ||
Sbjct 3623 GGTACTGTAATCACAGCTTCTGTTACTGGCTGTCCGAGATA--TGCTTCCGCATCTGCTT 3680
Query 518346 TCATTTTACTTAAAATCATTGATGAAATTT 518375
||| ||| |||||||||| ||||||||
Sbjct 3681 TCAGCTTAGACAAAATCATTGCTGAAATTT 3710
Score = 86.0 bits (94), Expect = 5e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298
||| |||||| ||||| ||||||||||| || |||||||| || | || || | |
Sbjct 3507 CTAGACCGTAGGCAAGCGCTGCTGCAGTAGGCTCATTAATAATACGTCGTACTTCAAGTC 3566
Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358
| || || ||| ||| ||| |||||| || | ||| || ||||| || ||||| ||||
Sbjct 3567 CTGCGATCTTACCAGCATCCTTAGTTGCCTGACGCTGCGCATCATTGAAGTATGCAGGTA 3626
Query 322359 CAGTAATAACTGCTT 322373
| ||||| || ||||
Sbjct 3627 CTGTAATCACAGCTT 3641
>seq432
Length=31072
Score = 89.7 bits (98), Expect = 4e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
||||||||||| ||||| | || ||||||||||| || ||||| || | || ||||||
Sbjct 14468 GGTAAAGAAGGACGTATCCGCGGTAATTTGATGGGCAAGCGTGTAGACTTTTCGGCACGT 14527
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966
|| |||||||| |||| || |||||||| | | |||| || |||||||
Sbjct 14528 ACGGTTATTACCGCTGACCCGAATATTGCAATTGACCAAGTGGGCGTTCCTC 14579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780222652868716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |