Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq692 98.7 1e-15 seq8805 91.5 2e-13 seq732 87.8 2e-12 seq7774 84.2 3e-11 >seq692 Length=44129 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || |||||||||||||| ||||| || || ||||| ||| ||||| || | | ||| Sbjct 37482 ACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGAAC 37423 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || ||||| | || ||||| ||||||||||| | || | || ||||| Sbjct 37422 AGGTCGCGCACACGGGATGGGCCCACACCAACGAACATCTCGATAAAATCTGATCCAGAA 37363 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 || ||| || || ||| ||||| || ||||| || || || ||||| || Sbjct 37362 ATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTTCCT 37303 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||||||| | || | || ||||| || |||||||||||||| Sbjct 37302 GTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 37256 >seq8805 Length=1264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 357/555 (64%), Gaps = 40/555 (7%) Strand=Plus/Minus Query 11428 AGCGTTTTGTCCCTCGCATGAACACCCAAAATCTTCCTGCGTCCTTGAACACTGGGGAGA 11487 |||| |||| | | |||||||| | |||||| ||| |||| ||| | ||| Sbjct 1009 AGCGGCTTGTTCTTGGCATGAACCTGAAGAATCTTTTCGCGGCCTTCAACG-TCAGGACG 951 Query 11488 GTCACCTGAATC---TTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATA 11544 |||| | |||| | || || || || || || || || | ||| ||||||||||| Sbjct 950 GTCAAC--AATCACCTGGCGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATA 893 Query 11545 TCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCC 11601 || ||||| || || ||||| || ||| | | |||||| || |||||| Sbjct 892 TCAGGGCGGTTCGTTGCAGCAATCAC---AATCGTTGAGTGATTGTCTTCAAAGCCGTCC 836 Query 11602 ATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC--AC 11659 ||||| | || | |||||| | || ||||| |||||||| | || || || || Sbjct 835 ATTTCAATCAGCAACTGGTTAAGGGTTTGTTCGCGCTCATCAT--GACCGCCGCCCATAC 778 Query 11660 CTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACG------ 11713 |||| ||||| ||| || |||||||| || ||||| || | | ||| | Sbjct 777 CTGCACCACGCTGACGACCAACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCAT 718 Query 11714 GTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGA 11773 ||| ||| ||||| || || | ||||| || || || || ||||| || | Sbjct 717 GTTTTTTG------GCCTGGTCAAACAAGTCACGGACTCGAGAAGCACCCACACCCACAA 664 Query 11774 ACATCTCAACGAAGTTTGCGGCAGAA-CACTG-----AATGAAGGGAACATTAGACTCAC 11827 |||| ||||| || | ||||| ||||| || ||| || ||| || ||||| Sbjct 663 ACATTTCAACAAATT------CAGAACCACTGATGCTAAAGAAAGGCACAGAAGCCTCAC 610 Query 11828 CAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGC 11887 |||| | ||| ||| | | || ||||| |||||||| | || | || | | ||| Sbjct 609 CAGCAACTGCTTTAGCAATCAAGGTTTTACCTGTACCAGGCGGGCCTACAAGCAAGACGC 550 Query 11888 CACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947 | || |||||||| ||| | || ||||| || |||||||| |||| Sbjct 549 CTTTAGGAATCTTGGCGCCAAGGGCCTGATATTTATCAGGAGATTTTAGGAAGTCGACAA 490 Query 11948 TCTCCTCAAGTTCCT 11962 | || || ||||||| Sbjct 489 TTTCTTCGAGTTCCT 475 >seq732 Length=22061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/186 (71%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| ||| |||||||| || ||||| || ||||||||||| || | ||| Sbjct 8984 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 9043 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||||||||| | || || || || ||||| ||||| || || |||| || Sbjct 9044 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 9103 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTT----GTCGAACCACTTGAGAGCCCAGTT 119689 || | || ||||| || | | || |||| |||| |||||||||| ||||| || Sbjct 9104 GCCAGCAGCCGCTCCGC-GTACGAAGATACTTGTGGGTCGCACCACTTGAGCGCCCAATT 9162 Query 119690 GGCCTT 119695 ||| || Sbjct 9163 GGCTTT 9168 >seq7774 Length=1414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || |||||||| || ||||| | || | |||||| || | Sbjct 1113 CGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAAATGCATGGAGGTC 1172 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || ||||| | || || |||||||||| || | |||||||||||| ||| || Sbjct 1173 AGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGACTGACAGATAAAG 1232 Query 109528 CGACCACGATCAGCCGCCATGTCGATGA-TACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 ||||| ||||| ||||| ||||| | ||| || | ||||||||||| || || Sbjct 1233 GCGCCACGGTCAGCTGCCATATCGATCAGGGCAC-GCTGCTTGATTTCCCAGACGGTTTT 1291 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTC 109616 ||| | | |||||| | || ||||| || Sbjct 1292 GTAGATTTCCTTGATGTTTTCAGGAATCTC 1321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588887020450800