Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq692 98.7 1e-15
seq8805 91.5 2e-13
seq732 87.8 2e-12
seq7774 84.2 3e-11
>seq692
Length=44129
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
|| |||||||||||||| ||||| || || ||||| ||| ||||| || | | |||
Sbjct 37482 ACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGAAC 37423
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799
|| || || ||||| | || ||||| ||||||||||| | || | || |||||
Sbjct 37422 AGGTCGCGCACACGGGATGGGCCCACACCAACGAACATCTCGATAAAATCTGATCCAGAA 37363
Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859
|| ||| || || ||| ||||| || ||||| || || || ||||| ||
Sbjct 37362 ATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTTCCT 37303
Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
|||||||| | || | || ||||| || ||||||||||||||
Sbjct 37302 GTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 37256
>seq8805
Length=1264
Score = 91.5 bits (100), Expect = 2e-13
Identities = 357/555 (64%), Gaps = 40/555 (7%)
Strand=Plus/Minus
Query 11428 AGCGTTTTGTCCCTCGCATGAACACCCAAAATCTTCCTGCGTCCTTGAACACTGGGGAGA 11487
|||| |||| | | |||||||| | |||||| ||| |||| ||| | |||
Sbjct 1009 AGCGGCTTGTTCTTGGCATGAACCTGAAGAATCTTTTCGCGGCCTTCAACG-TCAGGACG 951
Query 11488 GTCACCTGAATC---TTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATA 11544
|||| | |||| | || || || || || || || || | ||| |||||||||||
Sbjct 950 GTCAAC--AATCACCTGGCGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATA 893
Query 11545 TCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCC 11601
|| ||||| || || ||||| || ||| | | |||||| || ||||||
Sbjct 892 TCAGGGCGGTTCGTTGCAGCAATCAC---AATCGTTGAGTGATTGTCTTCAAAGCCGTCC 836
Query 11602 ATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC--AC 11659
||||| | || | |||||| | || ||||| |||||||| | || || || ||
Sbjct 835 ATTTCAATCAGCAACTGGTTAAGGGTTTGTTCGCGCTCATCAT--GACCGCCGCCCATAC 778
Query 11660 CTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACG------ 11713
|||| ||||| ||| || |||||||| || ||||| || | | ||| |
Sbjct 777 CTGCACCACGCTGACGACCAACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCAT 718
Query 11714 GTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGA 11773
||| ||| ||||| || || | ||||| || || || || ||||| || |
Sbjct 717 GTTTTTTG------GCCTGGTCAAACAAGTCACGGACTCGAGAAGCACCCACACCCACAA 664
Query 11774 ACATCTCAACGAAGTTTGCGGCAGAA-CACTG-----AATGAAGGGAACATTAGACTCAC 11827
|||| ||||| || | ||||| ||||| || ||| || ||| || |||||
Sbjct 663 ACATTTCAACAAATT------CAGAACCACTGATGCTAAAGAAAGGCACAGAAGCCTCAC 610
Query 11828 CAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGC 11887
|||| | ||| ||| | | || ||||| |||||||| | || | || | | |||
Sbjct 609 CAGCAACTGCTTTAGCAATCAAGGTTTTACCTGTACCAGGCGGGCCTACAAGCAAGACGC 550
Query 11888 CACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947
| || |||||||| ||| | || ||||| || |||||||| ||||
Sbjct 549 CTTTAGGAATCTTGGCGCCAAGGGCCTGATATTTATCAGGAGATTTTAGGAAGTCGACAA 490
Query 11948 TCTCCTCAAGTTCCT 11962
| || || |||||||
Sbjct 489 TTTCTTCGAGTTCCT 475
>seq732
Length=22061
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/186 (71%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573
|| ||||| ||| |||||||| || ||||| || ||||||||||| || | |||
Sbjct 8984 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 9043
Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633
|| ||||||||||| | || || || || ||||| ||||| || || |||| ||
Sbjct 9044 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 9103
Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTT----GTCGAACCACTTGAGAGCCCAGTT 119689
|| | || ||||| || | | || |||| |||| |||||||||| ||||| ||
Sbjct 9104 GCCAGCAGCCGCTCCGC-GTACGAAGATACTTGTGGGTCGCACCACTTGAGCGCCCAATT 9162
Query 119690 GGCCTT 119695
||| ||
Sbjct 9163 GGCTTT 9168
>seq7774
Length=1414
Score = 84.2 bits (92), Expect = 3e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| || || ||||| || |||||||| || ||||| | || | |||||| || |
Sbjct 1113 CGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAAATGCATGGAGGTC 1172
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
|| ||||| | || || |||||||||| || | |||||||||||| ||| ||
Sbjct 1173 AGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGACTGACAGATAAAG 1232
Query 109528 CGACCACGATCAGCCGCCATGTCGATGA-TACACTTTTGGCTAATTTCCCAGACAGTCTT 109586
||||| ||||| ||||| ||||| | ||| || | ||||||||||| || ||
Sbjct 1233 GCGCCACGGTCAGCTGCCATATCGATCAGGGCAC-GCTGCTTGATTTCCCAGACGGTTTT 1291
Query 109587 GTACAAATTCTTGATATCATCGGGAATGTC 109616
||| | | |||||| | || ||||| ||
Sbjct 1292 GTAGATTTCCTTGATGTTTTCAGGAATCTC 1321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588887020450800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |