Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3759 187 3e-42 seq4369 154 2e-32 seq732 125 8e-24 seq7156 123 3e-23 seq6184 100 3e-16 seq692 89.7 6e-13 seq12085 87.8 2e-12 seq12082 87.8 2e-12 >seq3759 Length=3256 Score = 187 bits (206), Expect = 3e-42 Identities = 527/800 (66%), Gaps = 12/800 (2%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 |||||||||||||| || || |||||||| | || |||||| || | ||||| |||| | Sbjct 2663 CGGAGATAGTACATACCCGTTTTGAGTCCCTTTTCCCACGCATAGAAGTGCATGGAAGTG 2604 Query 105650 AGCTTGGACATCGTT-GGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708 ||||| | || ||| ||| | | ||||||||||||||||| | ||| || | | Sbjct 2603 AGCTTCG-CAAAGTTAGGATCTGATACAAAAAGATTCATACTTTGCCCCTGACAAACGTA 2545 Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCG 105768 ||| | | ||| ||||||||||| | | | |||| ||| ||||| ||| Sbjct 2544 TGCACCTCTGTCTGCAGCCATATCAATAATAGCTCTCATGCTGAGCTCCCAGCTTGTTTT 2485 Query 105769 GTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTT 105828 ||| |||| |||||| || || || ||||||||||| || || ||||| | | Sbjct 2484 GTAAAGATCACGGATATCTTCCGGTATCTCTGAGATATTCTGGATAGAACCGTCATGTGT 2425 Query 105829 GACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAG 105888 | || || ||||| |||| |||||||| | || | ||| ||| || Sbjct 2424 AATAATTTTGTCACGGATATCTTTGGTCCAAAGACTTAGTGACTCCAAATCTCGGACTAG 2365 Query 105889 ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGT 105948 || ||||| || || | ||| ||||| | | | | ||||| | || | || Sbjct 2364 GTGTTTGTTCACTATGATAAATTCTCCTGACAATACGCGACGAAGATAAAGATTGGAAGT 2305 Query 105949 GTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 || || |||||||| || || ||||||||||| ||| | ||| ||| || ||||| Sbjct 2304 ATATGGCTCAAAGCACTCGTTGTTACCCAAGATCTGTCCACTGGTGGCAGTAGGCATCAA 2245 Query 106009 TGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTG-AGAACATCCC 106067 || || | |||| ||| || | ||| | ||||| || | | | | | | ||| || Sbjct 2244 GGCGATAAGAAGAGAGTTTCGCACACCATGCTCCTTTAT-CTTATTTCGCAAAGCATTCC 2186 Query 106068 AGTCGTA-GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGAC 106126 |||| | | || || ||| || ||||||||||||| |||| || || ||||| Sbjct 2185 AGTCCCACCTACTACTAGGAGTCA-CTCCCCACATATCAAACTGAAATACACCCTGGGAA 2127 Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTT---GGGCTTCAGCCAATTCACAGCTC 106183 | |||||||| || | || ||||||| ||||| | ||| || | ||||| Sbjct 2126 ATAGGAGAACCTTCGTAGGTTTCATAGGTACCTTCACGAGCT---GCAATATCACAAGAA 2070 Query 106184 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 106243 || || | || | |||||||| || ||||| | ||| | || || |||| Sbjct 2069 GCAGAAAGTGCCGCATAGTACATGGTCTCGAAGATCTCACGATTGAGCTGCTGCGCTTTC 2010 Query 106244 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || ||||| | || | || ||||| |||| || || || || || || | Sbjct 2009 TCCGAGTCAAAAGGATATCTAAGCAGGATAAACGCATCAGCAAGTCCCTGCACTCCAAGT 1950 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || | || | ||||||||||| || | |||| |||||| || |||||| |||| Sbjct 1949 CCCACTGGGCGATGTCGCATATTGGAAGTACGCGTAGTCTCCACTGGATAATGATTTTGA 1890 Query 106364 TCAATGACTCGGTTTAGATT 106383 ||||| ||||| || | ||| Sbjct 1889 TCAATCACTCGATTCATATT 1870 >seq4369 Length=2652 Score = 154 bits (170), Expect = 2e-32 Identities = 351/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || || || ||||| | |||||| ||||| | |||||||| | ||| || || Sbjct 2599 CCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCTGGCATTAAACCACGTTTT 2540 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||||||||||||||| ||||| | || |||||||| || |||||||| | || Sbjct 2539 TTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATCCCCTCCACCGCCATGAAG 2480 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 |||| || ||||| || || | | || | || | ||| |||| ||||||||| Sbjct 2479 GCAATGAGACGCTCAGCAAATG---TACCCTCT---TCTATCCACTTCAGTGCCCATTTT 2426 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGAT 117531 || |||||| |||| || | ||| | | | || |||||||| |||||| Sbjct 2425 GCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAACTTGGCCTTTTCTACC 2366 Query 117532 CCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTT-CATT 117590 |||| ||||| ||| | |||||||| || || || || |||| | ||| ||| Sbjct 2365 GCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAGCATGTATGTTTTCCATC 2306 Query 117591 ATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAAAT 117649 ||| || ||| || | |||| | || || || | |||||| || | | ||||| Sbjct 2305 ATG--ATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCACCTCTTTCATAAAAT 2248 Query 117650 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 117709 | | | |||||| || || ||||| | | |||||||| |||| || | | Sbjct 2247 TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAGAACGCCAAAATATGCG 2188 Query 117710 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 117769 ||||| | |||||| ||||| || | ||||| || ||| || | |||||||| Sbjct 2187 AAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCAAAGTCATCGGACAAAT 2128 Query 117770 CAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTATA 117812 ||| |||||| ||||||||| | | || ||| |||||||| Sbjct 2127 CAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085 >seq732 Length=22061 Score = 125 bits (138), Expect = 8e-24 Identities = 331/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||| ||||| || | ||| || | ||||| Sbjct 8678 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 8737 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||||||||| ||||| || | |||| | ||| || | | | || || Sbjct 8738 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 8797 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 |||| ||| |||||||||||| | |||| | | |||||||| || || || | | Sbjct 8798 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 8857 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 || || | |||| | ||| | | ||| ||| || || || | ||| | |||| Sbjct 8858 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 8917 Query 117226 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | || || || || | || || | | | ||| |||| |||| || Sbjct 8918 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 8973 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 | ||| | ||||||||||| ||| || || || ||||||| ||||| |||||||| Sbjct 8974 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 9033 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 ||| |||||||||| |||| | || | |||||| || || |||||||| || || || || Sbjct 9034 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 9093 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTT-TGTGTCAAACCATTTCA 117460 | ||||| || | || ||||| ||| | || || |||| || ||| |||| || | Sbjct 9094 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 9152 Query 117461 TTGCCCATTTCGCCTTCTT 117479 ||||| || || ||||| Sbjct 9153 GCGCCCAATTGGCTTTCTT 9171 >seq7156 Length=1532 Score = 123 bits (136), Expect = 3e-23 Identities = 251/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || |||||||| | | || | ||| || | ||| | || || ||||| Sbjct 599 CGGTCAAAACGGCCTGGACGTAACAATGCTTTATCCAGCACATCTGCACGGTTAGTCGCA 540 Query 9252 GCGATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || || || | | || | ||| | ||||||||||||||||| || | ||||| Sbjct 539 GCAATCACGATCACGCCAGAATTCGCT-TCAAAACCATCCATCTCGACCAGCATCTGGTT 481 Query 9311 AATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9368 | || ||||| || ||||| || ||| | | | |||||||| ||| || || Sbjct 480 CAATGTCTGTTCACGCTCATCGTTACCGCCGCC--AGTACCAGCACCGCGATGACGGCCA 423 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || || || |||||||| || || || ||||| ||| ||||| |||| ||||||| Sbjct 422 ACCGCGTCGATCTCATCGATAAATACGATACAAGGTGCATTTTTCTTGGCGTTTTCAAAC 363 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 | || || || | || ||||| || |||||||| || ||||||| | |||| Sbjct 362 ATGTCACGCACACGCGCAGCACCCACGCCGACAAACATTTCTACAAAGTCAGAACCGGAG 303 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || |||||| || || | |||||| ||||| || ||||| || || || ||||| Sbjct 302 ATGCTGAAGAAGGGCACTTTGGCTTCACCGGCAATCGCACGGGCCAGCAGGGTTTTACCA 243 Query 9549 GTACCTGG 9556 ||||| || Sbjct 242 GTACCCGG 235 >seq6184 Length=1767 Score = 100 bits (110), Expect = 3e-16 Identities = 249/370 (67%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 9190 TACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCG 9249 |||||||||| || |||||||| || || || ||||| | |||| | ||| || | Sbjct 391 TACGATCAAATCGCCCTGGACGTAGAAGAGCAGGGTCAAGTACATCAGGTCTATTTGTGG 332 Query 9250 CGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 || || || | || ||| || ||||| |||||||| ||||| | | || | Sbjct 331 AAGCCATTACGATAACGTTTGTATCCACTTCAAATCCATCCATTTCTGTAAGGATCTGAT 272 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCC 9368 | | ||||||||| || ||||||| || | ||| ||||||| || || || Sbjct 271 TGAGAGTTTGTTCGCGCTCATCATGTCCTCCACCTACT-CCAGCACCACGCTGACGACCT 213 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG-GCGATTTCAAA 9427 || ||||| || ||||| || |||| |||| | || | | ||| || ||| ||| Sbjct 212 ACAGCATCTATTTCATCTATAAAGATAATAGAAGGCGCAGTA-CGCTTTGCTTTTTTAAA 154 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||| || | || | || || ||||| ||||||||||||||||| | | | || Sbjct 153 GAGGTCTCTTACTCGAGATGCACCTACACCTACAAACATCTCCACAAACTCAGAACCAGA 94 Query 9488 -ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 | | || | || || |||| || ||| || || | || ||||| ||||| ||||||| Sbjct 93 GATAGTGTA-AAAAGGAACATCAGCTTCTCCTGCTACTGCACGGGCTAGAAGTGTCTTAC 35 Query 9547 CCGTACCTGG 9556 | || ||||| Sbjct 34 CAGTTCCTGG 25 >seq692 Length=44129 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 |||| || ||||||||||||||||| ||||| || || || | || || | | Sbjct 37484 CCACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGA 37425 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 | || ||||| || | | |||||||||||| |||||||| | ||| | || | | Sbjct 37424 ACAGGTCGCGCACACGGGATGGGCCCACACCAACGAACATCTCGATAAAATCTGATCCAG 37365 Query 9487 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 || | ||| ||||| ||| |||||| ||| ||||| || || || ||||| | Sbjct 37364 AAATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTTC 37305 Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 | ||||| ||| || | || ||||||||| || |||||||| || Sbjct 37304 CTGTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 37256 >seq12085 Length=2098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| ||| Sbjct 563 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 622 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 623 CCGGTAGGAGCTT 635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| ||| Sbjct 718 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 777 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 778 CCGGTAGGAGCTT 790 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| ||| || |||||||| | | || |||||||||| Sbjct 222 GCTCTTATGGTGTAATGGTCAGCACTCTGGGCTCTGAATCCAGCGATCCGGGTTCAAATC 281 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 282 CCGGTAGGAGCTT 294 >seq12082 Length=1675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 735 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 794 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 795 CCGGTAGGAGCTT 807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589891668650640