Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq3759 187 3e-42
seq4369 154 2e-32
seq732 125 8e-24
seq7156 123 3e-23
seq6184 100 3e-16
seq692 89.7 6e-13
seq12085 87.8 2e-12
seq12082 87.8 2e-12
>seq3759
Length=3256
Score = 187 bits (206), Expect = 3e-42
Identities = 527/800 (66%), Gaps = 12/800 (2%)
Strand=Plus/Minus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
|||||||||||||| || || |||||||| | || |||||| || | ||||| |||| |
Sbjct 2663 CGGAGATAGTACATACCCGTTTTGAGTCCCTTTTCCCACGCATAGAAGTGCATGGAAGTG 2604
Query 105650 AGCTTGGACATCGTT-GGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708
||||| | || ||| ||| | | ||||||||||||||||| | ||| || | |
Sbjct 2603 AGCTTCG-CAAAGTTAGGATCTGATACAAAAAGATTCATACTTTGCCCCTGACAAACGTA 2545
Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCG 105768
||| | | ||| ||||||||||| | | | |||| ||| ||||| |||
Sbjct 2544 TGCACCTCTGTCTGCAGCCATATCAATAATAGCTCTCATGCTGAGCTCCCAGCTTGTTTT 2485
Query 105769 GTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTT 105828
||| |||| |||||| || || || ||||||||||| || || ||||| | |
Sbjct 2484 GTAAAGATCACGGATATCTTCCGGTATCTCTGAGATATTCTGGATAGAACCGTCATGTGT 2425
Query 105829 GACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAG 105888
| || || ||||| |||| |||||||| | || | ||| ||| ||
Sbjct 2424 AATAATTTTGTCACGGATATCTTTGGTCCAAAGACTTAGTGACTCCAAATCTCGGACTAG 2365
Query 105889 ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGT 105948
|| ||||| || || | ||| ||||| | | | | ||||| | || | ||
Sbjct 2364 GTGTTTGTTCACTATGATAAATTCTCCTGACAATACGCGACGAAGATAAAGATTGGAAGT 2305
Query 105949 GTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008
|| || |||||||| || || ||||||||||| ||| | ||| ||| || |||||
Sbjct 2304 ATATGGCTCAAAGCACTCGTTGTTACCCAAGATCTGTCCACTGGTGGCAGTAGGCATCAA 2245
Query 106009 TGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTG-AGAACATCCC 106067
|| || | |||| ||| || | ||| | ||||| || | | | | | | ||| ||
Sbjct 2244 GGCGATAAGAAGAGAGTTTCGCACACCATGCTCCTTTAT-CTTATTTCGCAAAGCATTCC 2186
Query 106068 AGTCGTA-GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGAC 106126
|||| | | || || ||| || ||||||||||||| |||| || || |||||
Sbjct 2185 AGTCCCACCTACTACTAGGAGTCA-CTCCCCACATATCAAACTGAAATACACCCTGGGAA 2127
Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTT---GGGCTTCAGCCAATTCACAGCTC 106183
| |||||||| || | || ||||||| ||||| | ||| || | |||||
Sbjct 2126 ATAGGAGAACCTTCGTAGGTTTCATAGGTACCTTCACGAGCT---GCAATATCACAAGAA 2070
Query 106184 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 106243
|| || | || | |||||||| || ||||| | ||| | || || ||||
Sbjct 2069 GCAGAAAGTGCCGCATAGTACATGGTCTCGAAGATCTCACGATTGAGCTGCTGCGCTTTC 2010
Query 106244 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 106303
|| || ||||| | || | || ||||| |||| || || || || || || |
Sbjct 2009 TCCGAGTCAAAAGGATATCTAAGCAGGATAAACGCATCAGCAAGTCCCTGCACTCCAAGT 1950
Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363
|| | || | ||||||||||| || | |||| |||||| || |||||| ||||
Sbjct 1949 CCCACTGGGCGATGTCGCATATTGGAAGTACGCGTAGTCTCCACTGGATAATGATTTTGA 1890
Query 106364 TCAATGACTCGGTTTAGATT 106383
||||| ||||| || | |||
Sbjct 1889 TCAATCACTCGATTCATATT 1870
>seq4369
Length=2652
Score = 154 bits (170), Expect = 2e-32
Identities = 351/523 (67%), Gaps = 10/523 (2%)
Strand=Plus/Minus
Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351
|| || || || ||||| | |||||| ||||| | |||||||| | ||| || ||
Sbjct 2599 CCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCTGGCATTAAACCACGTTTT 2540
Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
|||||||||||||||| ||||| | || |||||||| || |||||||| | ||
Sbjct 2539 TTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATCCCCTCCACCGCCATGAAG 2480
Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471
|||| || ||||| || || | | || | || | ||| |||| |||||||||
Sbjct 2479 GCAATGAGACGCTCAGCAAATG---TACCCTCT---TCTATCCACTTCAGTGCCCATTTT 2426
Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGAT 117531
|| |||||| |||| || | ||| | | | || |||||||| ||||||
Sbjct 2425 GCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAACTTGGCCTTTTCTACC 2366
Query 117532 CCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTT-CATT 117590
|||| ||||| ||| | |||||||| || || || || |||| | ||| |||
Sbjct 2365 GCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAGCATGTATGTTTTCCATC 2306
Query 117591 ATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAAAT 117649
||| || ||| || | |||| | || || || | |||||| || | | |||||
Sbjct 2305 ATG--ATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCACCTCTTTCATAAAAT 2248
Query 117650 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 117709
| | | |||||| || || ||||| | | |||||||| |||| || | |
Sbjct 2247 TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAGAACGCCAAAATATGCG 2188
Query 117710 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 117769
||||| | |||||| ||||| || | ||||| || ||| || | ||||||||
Sbjct 2187 AAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCAAAGTCATCGGACAAAT 2128
Query 117770 CAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTATA 117812
||| |||||| ||||||||| | | || ||| ||||||||
Sbjct 2127 CAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085
>seq732
Length=22061
Score = 125 bits (138), Expect = 8e-24
Identities = 331/499 (66%), Gaps = 10/499 (2%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
|| || || || |||||||| || ||||| ||||| || | ||| || | |||||
Sbjct 8678 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 8737
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105
|||||||||| ||||| || | |||| | ||| || | | | || ||
Sbjct 8738 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 8797
Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165
|||| ||| |||||||||||| | |||| | | |||||||| || || || | |
Sbjct 8798 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 8857
Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225
|| || | |||| | ||| | | ||| ||| || || || | ||| | ||||
Sbjct 8858 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 8917
Query 117226 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281
| || || || || | || || | | | ||| |||| |||| ||
Sbjct 8918 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 8973
Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341
| ||| | ||||||||||| ||| || || || ||||||| ||||| ||||||||
Sbjct 8974 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 9033
Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401
||| |||||||||| |||| | || | |||||| || || |||||||| || || || ||
Sbjct 9034 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 9093
Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTT-TGTGTCAAACCATTTCA 117460
| ||||| || | || ||||| ||| | || || |||| || ||| |||| || |
Sbjct 9094 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 9152
Query 117461 TTGCCCATTTCGCCTTCTT 117479
||||| || || |||||
Sbjct 9153 GCGCCCAATTGGCTTTCTT 9171
>seq7156
Length=1532
Score = 123 bits (136), Expect = 3e-23
Identities = 251/368 (68%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| || |||||||| | | || | ||| || | ||| | || || |||||
Sbjct 599 CGGTCAAAACGGCCTGGACGTAACAATGCTTTATCCAGCACATCTGCACGGTTAGTCGCA 540
Query 9252 GCGATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310
|| || || | | || | ||| | ||||||||||||||||| || | |||||
Sbjct 539 GCAATCACGATCACGCCAGAATTCGCT-TCAAAACCATCCATCTCGACCAGCATCTGGTT 481
Query 9311 AATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9368
| || ||||| || ||||| || ||| | | | |||||||| ||| || ||
Sbjct 480 CAATGTCTGTTCACGCTCATCGTTACCGCCGCC--AGTACCAGCACCGCGATGACGGCCA 423
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| || || |||||||| || || || ||||| ||| ||||| |||| |||||||
Sbjct 422 ACCGCGTCGATCTCATCGATAAATACGATACAAGGTGCATTTTTCTTGGCGTTTTCAAAC 363
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488
| || || || | || ||||| || |||||||| || ||||||| | ||||
Sbjct 362 ATGTCACGCACACGCGCAGCACCCACGCCGACAAACATTTCTACAAAGTCAGAACCGGAG 303
Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
|| |||||| || || | |||||| ||||| || ||||| || || || |||||
Sbjct 302 ATGCTGAAGAAGGGCACTTTGGCTTCACCGGCAATCGCACGGGCCAGCAGGGTTTTACCA 243
Query 9549 GTACCTGG 9556
||||| ||
Sbjct 242 GTACCCGG 235
>seq6184
Length=1767
Score = 100 bits (110), Expect = 3e-16
Identities = 249/370 (67%), Gaps = 6/370 (2%)
Strand=Plus/Minus
Query 9190 TACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCG 9249
|||||||||| || |||||||| || || || ||||| | |||| | ||| || |
Sbjct 391 TACGATCAAATCGCCCTGGACGTAGAAGAGCAGGGTCAAGTACATCAGGTCTATTTGTGG 332
Query 9250 CGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309
|| || || | || ||| || ||||| |||||||| ||||| | | || |
Sbjct 331 AAGCCATTACGATAACGTTTGTATCCACTTCAAATCCATCCATTTCTGTAAGGATCTGAT 272
Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCC 9368
| | ||||||||| || ||||||| || | ||| ||||||| || || ||
Sbjct 271 TGAGAGTTTGTTCGCGCTCATCATGTCCTCCACCTACT-CCAGCACCACGCTGACGACCT 213
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG-GCGATTTCAAA 9427
|| ||||| || ||||| || |||| |||| | || | | ||| || ||| |||
Sbjct 212 ACAGCATCTATTTCATCTATAAAGATAATAGAAGGCGCAGTA-CGCTTTGCTTTTTTAAA 154
Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487
||| || | || | || || ||||| ||||||||||||||||| | | | ||
Sbjct 153 GAGGTCTCTTACTCGAGATGCACCTACACCTACAAACATCTCCACAAACTCAGAACCAGA 94
Query 9488 -ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546
| | || | || || |||| || ||| || || | || ||||| ||||| |||||||
Sbjct 93 GATAGTGTA-AAAAGGAACATCAGCTTCTCCTGCTACTGCACGGGCTAGAAGTGTCTTAC 35
Query 9547 CCGTACCTGG 9556
| || |||||
Sbjct 34 CAGTTCCTGG 25
>seq692
Length=44129
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426
|||| || ||||||||||||||||| ||||| || || || | || || | |
Sbjct 37484 CCACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGA 37425
Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486
| || ||||| || | | |||||||||||| |||||||| | ||| | || | |
Sbjct 37424 ACAGGTCGCGCACACGGGATGGGCCCACACCAACGAACATCTCGATAAAATCTGATCCAG 37365
Query 9487 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546
|| | ||| ||||| ||| |||||| ||| ||||| || || || ||||| |
Sbjct 37364 AAATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTTC 37305
Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
| ||||| ||| || | || ||||||||| || |||||||| ||
Sbjct 37304 CTGTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 37256
>seq12085
Length=2098
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| |||
Sbjct 563 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 622
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 623 CCGGTAGGAGCTT 635
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| |||
Sbjct 718 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 777
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 778 CCGGTAGGAGCTT 790
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| ||| || |||||||| | | || ||||||||||
Sbjct 222 GCTCTTATGGTGTAATGGTCAGCACTCTGGGCTCTGAATCCAGCGATCCGGGTTCAAATC 281
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 282 CCGGTAGGAGCTT 294
>seq12082
Length=1675
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 735 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 794
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 795 CCGGTAGGAGCTT 807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589891668650640
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