Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq6992 289 7e-74 seq6336 141 2e-29 seq2792 123 6e-24 >seq6992 Length=1569 Score = 289 bits (320), Expect = 7e-74 Identities = 1002/1527 (66%), Gaps = 66/1527 (4%) Strand=Plus/Plus Query 14793 GGCGACCAGTGGAACACGAGCGCGATATCGGCCATCACGTCGTCGACGGT-TCGAGGGAG 14851 |||| ||||||||| | | |||||| ||||||||| | || || ||| ||| | | Sbjct 33 GGCGGCCAGTGGAAGATGGCCGCGATGTCGGCCATCGCATCCTCTACGCAGTCGGGAAAT 92 Query 14852 GCGTCCGCCTTCGACGAGTTCGGCACCAAAAAA-CCGGCTACCTCGGTGCCGAGCTGGAC 14910 || | || || | ||||||| |||||| || || ||||| ||| | | | Sbjct 93 CCG-CTTCCCTCTGGGCCTTCGGCAAGAAAAAAACCTGC-ACCTCCTGGCCTACCGCCAG 150 Query 14911 GAGGTCCGCAGGGTCCAG-GCGTAGCACGTCCTGCGTGGTCAGAACGGGATCGCTGATGC 14969 ||||| || || |||| || | | ||||| |||||||| ||| | |||| Sbjct 151 CAGGTCGGCCGGATCCATCGCATTG-ACGTCGGCGGTGGTCAGCGTGGGCGAGGAAATGC 209 Query 14970 GCGGCAGCACCTTCGACAACGCGATCACGTCCAGCTGCAGCACGTCGGTGAGCGCGACGC 15029 | ||||||| | | || |||| | || |||||||||||||||||||||||| || || Sbjct 210 GAGGCAGCAGTGTTGCCAGCGCGGTGACATCCAGCTGCAGCACGTCGGTGAGCTTGAGGC 269 Query 15030 CGCGCAGCGCGCCCGCGAGCGGCTTGTTCAGCGTGACAGCGGTGATTTCCTGCTCGCCGC 15089 ||||||| |||| ||| |||||| | | ||| ||||||| ||||||||||| Sbjct 270 CGCGCAGTTCGCCTGCGCCGGGCTTGCGGACCTTGAGGTCGGTGATGGTCTGCTCGCCGC 329 Query 15090 GCTTGATCGGTGTGTCGAGCGTGATGACGGCGGATTGCTTCGATTGCATCGTATGGTTCC 15149 || |||| || |||||| | ||| | | ||| ||| ||||| | ||| | Sbjct 330 GCGTGATGGGCTGGTCGAGGGGAATGGCTGGGGAAAAGGTCGGGGTCATCGGAAGGTCTC 389 Query 15150 T---CTGAGG---GTAGGGGTAAGG------GGTTACAGGC--CAATGGCGCGGCGCTGC 15195 | |||| | || | ||| || | ||||| | ||||||||||| || Sbjct 390 AAGGCGGAGGCCCGGCGGCGCCAGGCCGGAAGGGT-CAGGCACCGATGGCGCGGCGGTGA 448 Query 15196 TGTGCGAGACGATCGACGCCGCCGACGACCTCGACGAAGTTCGGGACGTCGATCTCGATT 15255 | || || |||| |||||| ||||| ||||| | |||| | |||||||||||| Sbjct 449 GGGGCAAGCAGATCCACGCCGTTGACGATCTCGATCATGTTCATCAAATCGATCTCGATT 508 Query 15256 AGCGTCTCGCCGTTGCAGACG-AGCCGGTAATACGACAGG--GACATCGTGCCGGTCTGG 15312 | | | |||||||| | || ||| ||| || | || ||| || || | | Sbjct 509 ACGGGCACGCCGTTG-ATACTCAGCTTGTAGTAG--CTGGCCGACGTCTTGACCGAAAAC 565 Query 15313 TCGGCGTTGTCGCCGGCCTTGGCCTTGCCGGGGTCGATTTCCTTGTAGCGGCCGCGCACG 15372 |||| || ||||||| |||| | | ||||| || || ||||||| ||||||||||| Sbjct 566 TCGGTGTCATCGCCGGACTTGCCGGTACCGGGATCAATCTCCTTGTGACGGCCGCGCACA 625 Query 15373 TACACTTCGACCGCGTCGACTTCCTCGGTG---TCGTCGCGCTGATAGGAGCCAGCGAAA 15429 | ||| ||||| || || ||||||| ||||||||||| |||| ||| || || Sbjct 626 ACAATTTCCACCGCATCCAC---CTCGGTGGAATCGTCGCGCTGGTAGGCGCCGGCAAAG 682 Query 15430 CGTACGGTG-ACGCCGTCGACCTTCGACGTGCCCCATGTCTTGAACAT-CTCCTTCATGA 15487 || | | || ||| ||| | | | | | ||| | || | | || | ||| | Sbjct 683 CGCA-GCTGCACGGCGTTGTGCGTGGTGGCGCCGTACTGATTCAGTACGCTGCG-CATCA 740 Query 15488 AGCCGCCCATCGTCAGGCCGAGCTCCATCTTCTCCATGCCGAGGTCGATGTCGATCTCGG 15547 |||||| | || ||||||| ||||||||| ||||| ||||||||||| | | Sbjct 741 GGCCGCCGCACTTCCATTCGAGCTCGATCTTCTCCTGGCCGAAGTCGATGTCGACCGGGC 800 Query 15548 CGTTCATGCCGCCGCCGCGATACGCTTCCATCTTGCGCGTGAGCTTCGGCAACTGGATTT 15607 | ||||| ||||||||||||||| | ||||||||||| | ||| | |||| || | || Sbjct 801 CATTCATACCGCCGCCGCGATACTCCTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTT 860 Query 15608 CGGTGACTTCCCCGACGAACGAGGTG-CCGTCTTCGAAGACGTTGAAGTTCTTCAGTTTG 15666 || || | |||| || | | ||||| | ||| | ||||| || ||||| Sbjct 861 CGACCACCTGGCCGA-GATAGCTCTCACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTC 919 Query 15667 GATGGCAGAGCCATTGCGTTTCCCT--ATGGTGAGTGTCGAGCGATCAGACCGCGATGCT 15724 |||| |||||| | ||| || | |||| | ||| | | | || || Sbjct 920 TTGGGCAAAGCCATGGGGTTCTCCGGGAATCTGAGGCGGGTGCGTTACG-CGTTGACGCG 978 Query 15725 TTGCGCGAACTTGACCAGATAGCGGTCGGTGATGCGCTGGCGGAACGTCAGGTCTTCGAG 15784 || ||||| | | |||| |||| | |||||| || | | | || || || || Sbjct 979 TTCGGCGAAGTCGGCCAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAAGTTCTCCAG 1038 Query 15785 CGGCGGGGCAGGGCAGAAGTCGTAATCGATGA--AGCCCTGGCCGGCCTTGAGCGAAT-- 15840 ||| || | || | |||||||||||||| ||| | ||| | ||||| Sbjct 1039 CGGTGGCACCGGCGTGTAGTCGTAATCGATGCGCAGCGC--GCCATCGGCGAGCGTGGTG 1096 Query 15841 -CCTTGTCGTTCGCGCCCGGATCGAACCAGCATTCGCCGTCGATCAGGTAGCCGGCGGTC 15899 | ||| | | ||| ||| ||||| | | | ||||||| |||||| | | | Sbjct 1097 GCGCTGTTGACCATGCCG---TCGTACCAGGCGTTGGCATCGATCAAGTAGCCCGACGAC 1153 Query 15900 TTCCACGCGCGGAACTTCGCATTCACGCCATCGACGATGTCGCGCATCAGCGTGCGGCTC 15959 ||| |||||||||| || || | |||| | || | | ||||| | || | Sbjct 1154 TTCAGGTCGCGGAACTTGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGGGTGC 1213 Query 15960 ATCGGCTGGTCGACGGCCCACATGTGCGCCT-CGGCCATCGTGTCGGCGATCACCTGCGC 16018 ||||| | ||||||| || ||||| |||| || |||||||| | | |||||| Sbjct 1214 ATCGGTTTGTCGACGTAGAACGCCA-CGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGC 1272 Query 16019 ACTGCGCACATAGTTCTCGAACGCCCACAGCTTGTCCTCGGAACAGGTGCGCGATCCCCA 16078 ||||| ||||||| || ||| |||||||| | || |||||||||||||| Sbjct 1273 GGTGCGCGTGGCCGTCTCGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCA 1332 Query 16079 TAGACGGTAACCGTCCGCGTTCACCAGCGTGGTCACTTCGTGGCTGTTCAGGTAGCCCGC 16138 | || | |||| ||||||||||||| | ||| ||| ||| ||| || Sbjct 1333 GAAGCGCTGGCCGTTGAACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGC 1392 Query 16139 GTCGGTGTTCGGGTCCTGCAGGTCCCAGAACACGTCGCGGCTGATGCCCGTGACGCCGTT 16198 |||||| ||| |||||||| ||||| ||| || | |||||| |||||||| Sbjct 1393 ATCGGTGGCCGGATCCTGCAGATCCCAATGCACATCCTTGGAGATGCCGGTGACGCC--- 1449 Query 16199 GACCACG---ACGTTCGAGATCGTCTTGTGCCAGCCGATCTCTTC---GTCGATCTTCGC 16252 ||||| ||||| || | ||||||||||||| || ||| ||||||||| || Sbjct 1450 AGCCACGGGCACGTTGGACAGGCTCTTGTGCCAGCC---CTGTTCGGTGTCGATCTTGGC 1506 Query 16253 GCGCATGCCGAGCGCGCGCGCCGTTGC 16279 |||| ||||||||| ||||| || || Sbjct 1507 ACGCAGGCCGAGCGCACGCGCAGTGGC 1533 >seq6336 Length=1727 Score = 141 bits (156), Expect = 2e-29 Identities = 234/336 (70%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 32547 CCTCGGCACCAACGCGCGCACTGCGCAGAGCTACCACGGCAACCTGTATTTCGACGAGTA 32606 |||||| ||||| || ||||| || ||| ||||||||||||| | || |||||||| | Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420 Query 32607 CTTCTGGGTGCCGCGCTTCCAGGAGCTGCGCAAGGTCGCCTCCGGCATGGCGATTCACGA 32666 ||||||| | ||| | || || |||||||||| |||||||||||| ||| | Sbjct 1421 CTTCTGGACCTACGGGTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACAA 1480 Query 32667 CCAGTGGCGGCAGACGTATTTCTCGACGCCGTCGAGCCTCGCGCACGACGCTTATCCGTT 32726 ||||||| |||| || ||| || || |||||| | || ||||| || || |||| Sbjct 1481 GAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGTT 1540 Query 32727 CTGGTCGGGCAAGCTGTTCAACCGTGGCCGACCGAAAGATCAGCACGTATC--GATCGAC 32784 ||| | ||| ||| |||| ||| ||| | ||| || ||| |||||| Sbjct 1541 TTGGACCGGCGAGCGCCGCAACAAGGGCAAGCCGGCGGCGCAG--CGGATCCAGATCGAT 1598 Query 32785 ATTTCGCACGCGGCGCTGGCCGCGGGCCGTTCGTGTCAGGACGGCCAGTGGCGCCAGATC 32844 | ||||||| |||||||||| || || || |||||| || ||||| |||||| Sbjct 1599 GTCTCGCACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGCCTGGCGGCAGATC 1658 Query 32845 GTCACGGTCGAGGACGCCGTGCGCGGCGGTTGCAAC 32880 |||| || |||||| |||| | || ||| || Sbjct 1659 GTCAACATCCTCGACGCCCAGCGCCGTGGCTGCGAC 1694 >seq2792 Length=4928 Score = 123 bits (136), Expect = 6e-24 Identities = 417/636 (66%), Gaps = 30/636 (5%) Strand=Plus/Plus Query 9131 CTTTCTGGCCGAGATGGAGAAGGTCGTCCCTTGGTCGCGGCTGCTGTCGGTGATCGGGCC 9190 ||| || ||||||||||| |||| ||||| ||| | | ||||| | ||||| ||| Sbjct 1228 CTTCCTAGCCGAGATGGAACAGGTGGTCCCCTGGAAGGCGTTGCTGGCCCAGATCGAGCC 1287 Query 9191 GTATTACCCGAA---GGGCGAGCGTGGC-CGGCCGCCGATTGGCCTGGAACGGATGCTGC 9246 | |||||||| |||| |||||| ||||||||| ||||| |||||||| Sbjct 1288 GCATTACCCGCGCTCGGGCC-GCGTGGGTCGGCCGCCGTACTCAATGGAAACGATGCTGC 1346 Query 9247 GGATCTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGATGCGCTCT 9306 | ||| || |||||||||||||||| | ||| ||| || | || || ||||| Sbjct 1347 GCATCCACCTGCTGCAGCAGTGGTATGCATTGAGCGACCCTGGCATGGAGGAAGCGCTGC 1406 Query 9307 ACGACAGCATCGCGATGCGCGCCTTCGCGGG---CATCGACCTGGCGCGCGAGAACGTGC 9363 |||| | | | | || || || ||| | || || ||| | ||||| | | Sbjct 1407 ACGAGATCGCCTCAATTCGGTTGTTTGCGCGGCTCAGCGGCCTTGA-CGCGA-----TTC 1460 Query 9364 CGGACGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGACGCGAA 9423 |||| | |||||| | | || ||||| | ||||||| ||||| || || || Sbjct 1461 CGGATGAGACCACGATCCTCAACTTCCGTTGTCTGCTGGAGACGCACGGCCTTGCGGCAA 1520 Query 9424 AGCTGTTCGACGAGAT---CG-GCATCGAGTTGTGCGAGCGCGGGCTGATGA-TGAAGGA 9478 || || |||| | | | || ||| | ||| || |||| | | || | Sbjct 1521 AGATGCTCGAAGCGGTGAACGCGCACCT-----TGCCCGCAAGGGCCAAAGCCTGCGTGC 1575 Query 9479 AGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAGAACGCCGGGAA 9538 |||||| | || |||| |||||| || | || | | ||||| ||||||||| | Sbjct 1576 TGGCACGATCGTAAATGCCACGATCATCAACGCGCCAACTTCCACCAAGAACGCCAACAG 1635 Query 9539 GAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCATGAA 9598 | || | |||| | ||| | ||||| ||||||||| | ||||| ||||| ||||| Sbjct 1636 GTCGCGCGGCCCGTAAATGTACCAGACCCGCAAGGGCAACCAGTGGTACTTCGGGATGAA 1695 Query 9599 GGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGCGGC 9658 ||| ||| ||||||| |||| || ||||||||||| |||| |||||| || Sbjct 1696 GGCGCATATCGGCGTTGACGAATTTTCCGGTCTGGTGCACCACGTGAAGTGCACGGCAGC 1755 Query 9659 CAACGAGCCGGACGTATCGCAG--GCCCACGCCCTGCTGCACGGTCATG-AGCAGGAAGC 9715 || | || | || ||| ||||||| ||| ||||||| | | ||| || | Sbjct 1756 TAA--TGTTGGCGATGTCACAGTCACCCACGCGCTGTTGCACGGCAAGGAAGCCGG-TGT 1812 Query 9716 GTTTGGCGATGCGGGCTACACCGGCGTGGACAAGCG 9751 ||| | |||| ||||||| ||| | ||||| || Sbjct 1813 GTTCGACGATAGCGGCTACAGCGGTGCAGACAAACG 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119016516148936