Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq6992 437 2e-118 seq6336 122 2e-23 >seq6992 Length=1569 Score = 437 bits (484), Expect = 2e-118 Identities = 767/1100 (70%), Gaps = 45/1100 (4%) Strand=Plus/Plus Query 13585 CCGATCGCCTGGCGCAGACCGGCGAGCAGGTCGTTACCGTTGATCTTCTCGATCATGTTG 13644 ||||| || |||| || ||| ||||| || ||||||| ||||||||||||| Sbjct 431 CCGATGGCGCGGCGGTGAGGGGCAAGCAGATCCACGCCGTTGACGATCTCGATCATGTTC 490 Query 13645 ATGAAATCCATCTCGATCAGCTCCTGACCGTTGATGGACAGCTTGTAGTAGCTGGCCGCC 13704 || ||||| |||||||| | | |||||||| |||||||||||||||||||| | Sbjct 491 ATCAAATCGATCTCGATTACGGGCACGCCGTTGATACTCAGCTTGTAGTAGCTGGCCGAC 550 Query 13705 GTCGTGACCTTGAAATCGGTGTCTTCCTTCGGCTTGCCTGAACCCATGTCGATTTCCTTG 13764 ||| ||||| || |||||||| || | |||||| | ||| || || |||||| Sbjct 551 GTCTTGACCGAAAACTCGGTGTCATCGCCGGACTTGCCGGTACCGGGATCAATCTCCTTG 610 Query 13765 TGGCGGCCGCGCACGACGATTTCGACCGAATCGTAGGTC-TTCGAATCCTCGCGCTGGTA 13823 || ||||||||||| || ||||| |||| ||| | || | ||||| ||||||||||| Sbjct 611 TGACGGCCGCGCACAACAATTTCCACCGCATC-CACCTCGGTGGAATCGTCGCGCTGGTA 669 Query 13824 GCCGCCCGAGAAACGAAGTTGCACGCCGTCGTGCGTGGTGATGCCGTAC--ATGC-GAAC 13880 | |||| | || || || |||||| ||| |||||||||| ||||||| || | | || Sbjct 670 GGCGCCGGCAAAGCGCAGCTGCACGGCGTTGTGCGTGGTGGCGCCGTACTGATTCAGTAC 729 Query 13881 GACATCCTCCATGAAGCCGCCGCACGTCCATTCGAGCTGGATCGCTTCCTGGCCGAAGTC 13940 | | | ||| | |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 730 G-CTGC--GCATCAGGCCGCCGCACTTCCATTCGAGCTCGATCTTCTCCTGGCCGAAGTC 786 Query 13941 GATCGGGATCGGGCCGCTCATGCCGCCGCCCTGGTAGTCCTCCATCTTTCGCGACAGCTT 14000 ||| || |||||| |||| |||||||| | || ||||||||||| || |||||| | Sbjct 787 GATGTCGACCGGGCCATTCATACCGCCGCCGCGATACTCCTCCATCTTGCGGGACAGCGT 846 Query 14001 CGGGAGCTGGATTTCCTTCGTCTCGCCGACAAAGTTGGTGCCGTTGTGAAACAGGTTGAA 14060 || |||| | ||| | || ||||| | || | |||| || |||||||||| Sbjct 847 GGGCAGCTTCACTTCGACCACCTGGCCGAGATAGCTCTCACCGTCGTTGAACAGGTTGAG 906 Query 14061 GCCTTTCAGCTTGCGGGGCATACCCATGTGTGTGACTCCTGG----TTAGGCCG------ 14110 |||| || || ||||| | ||||| | || |||| || | |||| | Sbjct 907 CGCTTTGAGTTTCTTGGGCAAAGCCATG-GGGT-TCTCCGGGAATCTGAGGCGGGTGCGT 964 Query 14111 -AC------ACGCGCGAGGCGAAATCGGCGAGATAGCGATCGGTGATGCGCTGGCGCAGC 14163 || ||||| |||||| ||||| || |||| |||||| || | |||| Sbjct 965 TACGCGTTGACGCGTTCGGCGAAGTCGGCCAGGTAGCTGGTGGTGATCTTCTTGTACAGC 1024 Query 14164 TTCAGGTTTTCGAGCGGCGGGACCGGCGTGTAGTCGTAGTCGATCCATGTACCGC-CCGA 14222 | || ||| || ||||| || ||||||||||||||||| ||||| | | | ||| || Sbjct 1025 TGCAAGTTCTCCAGCGGTGGCACCGGCGTGTAGTCGTAATCGATGC--GCAGCGCGCCAT 1082 Query 14223 CGTC-AGCTCGTCGGTCGTGTTCGGCTCCGGGTCGTACCAGGCGCCGCCACCGATCAGCT 14281 || | ||| | || |||| | ||||||||||||| | || |||||| | Sbjct 1083 CGGCGAGCGTGGTGGCGCTGTTGACCATGCCGTCGTACCAGGCGTTGGCATCGATCAAGT 1142 Query 14282 CG-CCGACCGAGACTTC--GCGGCGGAACCACGCGTTGATGTTCTCGATGATGTcgcgcg 14338 | ||||| |||||| | ||||||| |||||||| | ||||| | || | Sbjct 1143 AGCCCGAC---GACTTCAGGTCGCGGAACTTGGCGTTGATCGTTTCGATCAGATCCCTGA 1199 Query 14339 cgcgcgACGGGTTGAGCGGGCCGTCGACG----ACGCCCATCTGTTCCTCGGCGATCGTG 14394 | |||| |||| | ||| ||||||| ||||| | | |||||||| ||| Sbjct 1200 CCAGCGAGGGGTGCATCGGTTTGTCGACGTAGAACGCCACGC----CTTCGGCGATGGTG 1255 Query 14395 TCAGCGATCACCTGTGCCGAACGCGTGTAGTTCTCGAAGAAGAACTTGCCGTCCGCGTCG 14454 || || | | ||| || | |||||| |||||||| |||| || |||| | || Sbjct 1256 TCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCTCGAAGGCGAACATGTTGTCCTCCGCG 1315 Query 14455 CACGTGCGCGAGCCCCAGAAACGGAAGCCGTTTCGGTTGACGAGCGTGGTGACCTGGTTC 14514 ||||||||||| |||||||| || |||||| | || |||||||||| | | | Sbjct 1316 CACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGAACGTCACCAGCGTGGTGATGTCGCCC 1375 Query 14515 TCGTTCAGATAGCCGGCGTCCGTTGCCGGGTCTTGCAAATCCCACGACACGTCCGCGCTG 14574 ||||| || |||||| || || ||||| || |||| |||||| ||| ||| | | Sbjct 1376 TCGTTGAGGATGCCGGCATCGGTGGCCGGATCCTGCAGATCCCAATGCACATCCTTGGAG 1435 Query 14575 ATGCCGGTCACGCCGTTGACGACGACGTTCGACAGCGTCTTGTGCCAGCCGATGTCGTTG 14634 |||||||| ||||| ||| ||||| ||||| ||||||||||||| ||| || Sbjct 1436 ATGCCGGTGACGCCAGCCACGGGCACGTTGGACAGGCTCTTGTGCCAGCCCTGTTCGGTG 1495 Query 14635 TCGATCTTCGCGCGCAGGCC 14654 |||||||| || |||||||| Sbjct 1496 TCGATCTTGGCACGCAGGCC 1515 Score = 91.5 bits (100), Expect = 4e-14 Identities = 230/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 13098 AGTCGTCCATGTCGCGCGGTGTCCAGCCGAACACCGTCGCGACGTCGGCCATCGCGTCTT 13157 || ||||||| || ||| | |||| ||| | | ||||| |||||||||||| || | Sbjct 16 AGCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTCGGCCATCGCATCCT 75 Query 13158 CTACGCGTTCTGGGATTCCATGCTCGCTTTCAGCGCCTTCGGC-ATCAAAAAACCGGCAA 13216 |||||| || || | ||| ||| | || | ||||||||| | |||||||| || Sbjct 76 CTACGCAGTCGGGAAATCC--GCT-TCCCTCTGGGCCTTCGGCAAGAAAAAAACCTGC-- 130 Query 13217 AAATAC-CCCCCAATGCCACGAGGTCGGCCGGGTCCATCAACGTGACATCCATTTCGGTC 13275 | | | || | |||| ||||||||||| |||||| |||| || |||| Sbjct 131 ACCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGACGTCGGCGGTGGTC 190 Query 13276 AGCGTCGGCGTGGTGATGCGCGGGAGTA-CCTTGCGCAGCGCGTCCACGTCGAGATTCAC 13334 ||||| |||| || ||||| || || | |||| ||||||| || || || | || Sbjct 191 AGCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGC-CAGCGCGGTGACATCCAGCTGCAG 249 Query 13335 GAGCGCCGCGAGCGACGTGCCGCGCAGTGCGCCGGCGGACGGCTTCGCGAGGGTCACGTG 13394 | | | |||| |||||||||| |||| ||| ||||| || | | || Sbjct 250 CACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTGCGGACCTTGAGGTC 309 Query 13395 CGTGATGGGCTGGTCGCCGTGCATGATCGGCGTGTCGAAGG 13435 ||||||| ||| |||||| || |||| ||| ||||| || Sbjct 310 GGTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAGGG 350 >seq6336 Length=1727 Score = 122 bits (134), Expect = 2e-23 Identities = 244/352 (69%), Gaps = 20/352 (6%) Strand=Plus/Plus Query 29115 CCTAGGGACGAACTCGCGCACCGCGCAGTCGTATCACGGCAATCTGTACTTCGACGAATA 29174 ||| ||||| || | |||||||| ||| || ||||||||| | ||||||||||||| Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420 Query 29175 TTTCTGGGTGCCGAAG--TTCCGCGAGCTGAATACCGTTGCGTCGGGCATGGCGATGCAC 29232 |||||| || | | ||| ||| |||| | || || ||||||||||||||| Sbjct 1421 CTTCTGGA--CCTACGGGTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCAC 1478 Query 29233 AAACGCTGGCGGCTGACCTACTTCAGCACGCCGTCGAGTACGACCCATGAAGCCTACGCG 29292 || ||||| ||||||||||||||| || ||||| | | |||| || |||||| || Sbjct 1479 AAGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACG 1538 Query 29293 TTCTGGAGCGGCGCCGATGCGAATCGTGGGCGCGCGCCTAGCG-ATCGTATCCAGATCGA 29351 || |||| ||||| | || | | |||| || ||| | || ||||||||||| Sbjct 1539 TTTTGGACCGGCG-AGCGCCGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGA 1597 Query 29352 ---CACGAGCCACGAAGCGCTCGTGCGAGGCATGCTGGGCGAGGA-CGAGCAGTGGCGTC 29407 | || ||||| ||||| | | || | || |||| || || ||||| | Sbjct 1598 TGTCTCG---CACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGC-CTGGCGGC 1653 Query 29408 AGATCGTCACCGTACTCGATGCGATCGAGGGC---GGCTGCGACTTGTTCGA 29456 ||||||||| | | ||||| || | || || ||||||||| ||||||| Sbjct 1654 AGATCGTCAACATCCTCGACGC---CCAGCGCCGTGGCTGCGACCTGTTCGA 1702 Score = 114 bits (126), Expect = 3e-21 Identities = 274/409 (67%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 28582 GAGCGCATCGAGGCGGCGGCCGAAACGCGCCTGATGGTCCTGATTGCGAAGGACAAGAAG 28641 |||||||||| | || |||| ||||| || | || |||||| |||| | ||| Sbjct 930 GAGCGCATCGGTGGCGCACTCGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGAAAAG 989 Query 28642 GACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGACAGATCGAGCGGCTCGCGCGC 28701 ||||| || | ||||||||| || ||||| || ||| | ||||| | |||||| Sbjct 990 TCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGCGCGC 1049 Query 28702 GTGCAGAAATACGG-GGAGACGGGGAAGGAAGGCGACCTGAACCCGAACATTGCCGCGCG 28760 | ||| ||| || | ||| || |||| ||| ||||| ||| | ||| || Sbjct 1050 ATCCAGCGCTACCAAGGCGGCGGC-AACGAAGCCGATCTGAATCCGGCTGTCGCCAATCG 1108 Query 28761 CAATGCCGGGCCGAAGCGCAAGCCGCCGAAAAACGAAATCAGCGAGGAACAGGAAGAGCG 28820 ||| || | ||| ||| || || | ||||| ||| || ||||||| |||| Sbjct 1109 CAACGCTGCGCCAAAGAAAAAACCCAAGCGCAACGACTTCACTGAAGAACAGGTCGAGCA 1168 Query 28821 GATCGTGAAGGCGTTCCGCGAATCACTG-TTCGACTACCAGAAGGTCTGGTATCGAAACG 28879 | | | |||||| ||| ||| |||||||||||| | ||||| || || Sbjct 1169 GCTGACCACCGCGTTCGTCGACGG-CTGCTTCGACTACCAGCGCGATTGGTACCGGGCCG 1227 Query 28880 GCGATCAGCAGACGCGCAATATCCTGAAGTCACGGCAGATCGGCGCCACCTGGTATTTCG 28939 || | ||| || |||| ||||| ||||| || |||||||| || || | || |||| Sbjct 1228 GCAACGAGCGCACCCGCATCATCCTCAAGTCGCGCCAGATCGGTGCAACGTTTTACTTCG 1287 Query 28940 CACGCGAGGCATTCGTCGACGCGCTCGATACCGGCCGCAACCAGATTTT 28988 | ||||| || | |||| |||||| ||||| ||||| |||||||| Sbjct 1288 CTCGCGAAGCGCTGATCGATGCGCTCACCACCGGGCGCAATCAGATTTT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129635791838444