Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_015266.1
Length=40555
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 437 2e-118
seq6336 122 2e-23
>seq6992
Length=1569
Score = 437 bits (484), Expect = 2e-118
Identities = 767/1100 (70%), Gaps = 45/1100 (4%)
Strand=Plus/Plus
Query 13585 CCGATCGCCTGGCGCAGACCGGCGAGCAGGTCGTTACCGTTGATCTTCTCGATCATGTTG 13644
||||| || |||| || ||| ||||| || ||||||| |||||||||||||
Sbjct 431 CCGATGGCGCGGCGGTGAGGGGCAAGCAGATCCACGCCGTTGACGATCTCGATCATGTTC 490
Query 13645 ATGAAATCCATCTCGATCAGCTCCTGACCGTTGATGGACAGCTTGTAGTAGCTGGCCGCC 13704
|| ||||| |||||||| | | |||||||| |||||||||||||||||||| |
Sbjct 491 ATCAAATCGATCTCGATTACGGGCACGCCGTTGATACTCAGCTTGTAGTAGCTGGCCGAC 550
Query 13705 GTCGTGACCTTGAAATCGGTGTCTTCCTTCGGCTTGCCTGAACCCATGTCGATTTCCTTG 13764
||| ||||| || |||||||| || | |||||| | ||| || || ||||||
Sbjct 551 GTCTTGACCGAAAACTCGGTGTCATCGCCGGACTTGCCGGTACCGGGATCAATCTCCTTG 610
Query 13765 TGGCGGCCGCGCACGACGATTTCGACCGAATCGTAGGTC-TTCGAATCCTCGCGCTGGTA 13823
|| ||||||||||| || ||||| |||| ||| | || | ||||| |||||||||||
Sbjct 611 TGACGGCCGCGCACAACAATTTCCACCGCATC-CACCTCGGTGGAATCGTCGCGCTGGTA 669
Query 13824 GCCGCCCGAGAAACGAAGTTGCACGCCGTCGTGCGTGGTGATGCCGTAC--ATGC-GAAC 13880
| |||| | || || || |||||| ||| |||||||||| ||||||| || | | ||
Sbjct 670 GGCGCCGGCAAAGCGCAGCTGCACGGCGTTGTGCGTGGTGGCGCCGTACTGATTCAGTAC 729
Query 13881 GACATCCTCCATGAAGCCGCCGCACGTCCATTCGAGCTGGATCGCTTCCTGGCCGAAGTC 13940
| | | ||| | |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 730 G-CTGC--GCATCAGGCCGCCGCACTTCCATTCGAGCTCGATCTTCTCCTGGCCGAAGTC 786
Query 13941 GATCGGGATCGGGCCGCTCATGCCGCCGCCCTGGTAGTCCTCCATCTTTCGCGACAGCTT 14000
||| || |||||| |||| |||||||| | || ||||||||||| || |||||| |
Sbjct 787 GATGTCGACCGGGCCATTCATACCGCCGCCGCGATACTCCTCCATCTTGCGGGACAGCGT 846
Query 14001 CGGGAGCTGGATTTCCTTCGTCTCGCCGACAAAGTTGGTGCCGTTGTGAAACAGGTTGAA 14060
|| |||| | ||| | || ||||| | || | |||| || ||||||||||
Sbjct 847 GGGCAGCTTCACTTCGACCACCTGGCCGAGATAGCTCTCACCGTCGTTGAACAGGTTGAG 906
Query 14061 GCCTTTCAGCTTGCGGGGCATACCCATGTGTGTGACTCCTGG----TTAGGCCG------ 14110
|||| || || ||||| | ||||| | || |||| || | |||| |
Sbjct 907 CGCTTTGAGTTTCTTGGGCAAAGCCATG-GGGT-TCTCCGGGAATCTGAGGCGGGTGCGT 964
Query 14111 -AC------ACGCGCGAGGCGAAATCGGCGAGATAGCGATCGGTGATGCGCTGGCGCAGC 14163
|| ||||| |||||| ||||| || |||| |||||| || | ||||
Sbjct 965 TACGCGTTGACGCGTTCGGCGAAGTCGGCCAGGTAGCTGGTGGTGATCTTCTTGTACAGC 1024
Query 14164 TTCAGGTTTTCGAGCGGCGGGACCGGCGTGTAGTCGTAGTCGATCCATGTACCGC-CCGA 14222
| || ||| || ||||| || ||||||||||||||||| ||||| | | | ||| ||
Sbjct 1025 TGCAAGTTCTCCAGCGGTGGCACCGGCGTGTAGTCGTAATCGATGC--GCAGCGCGCCAT 1082
Query 14223 CGTC-AGCTCGTCGGTCGTGTTCGGCTCCGGGTCGTACCAGGCGCCGCCACCGATCAGCT 14281
|| | ||| | || |||| | ||||||||||||| | || |||||| |
Sbjct 1083 CGGCGAGCGTGGTGGCGCTGTTGACCATGCCGTCGTACCAGGCGTTGGCATCGATCAAGT 1142
Query 14282 CG-CCGACCGAGACTTC--GCGGCGGAACCACGCGTTGATGTTCTCGATGATGTcgcgcg 14338
| ||||| |||||| | ||||||| |||||||| | ||||| | || |
Sbjct 1143 AGCCCGAC---GACTTCAGGTCGCGGAACTTGGCGTTGATCGTTTCGATCAGATCCCTGA 1199
Query 14339 cgcgcgACGGGTTGAGCGGGCCGTCGACG----ACGCCCATCTGTTCCTCGGCGATCGTG 14394
| |||| |||| | ||| ||||||| ||||| | | |||||||| |||
Sbjct 1200 CCAGCGAGGGGTGCATCGGTTTGTCGACGTAGAACGCCACGC----CTTCGGCGATGGTG 1255
Query 14395 TCAGCGATCACCTGTGCCGAACGCGTGTAGTTCTCGAAGAAGAACTTGCCGTCCGCGTCG 14454
|| || | | ||| || | |||||| |||||||| |||| || |||| | ||
Sbjct 1256 TCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCTCGAAGGCGAACATGTTGTCCTCCGCG 1315
Query 14455 CACGTGCGCGAGCCCCAGAAACGGAAGCCGTTTCGGTTGACGAGCGTGGTGACCTGGTTC 14514
||||||||||| |||||||| || |||||| | || |||||||||| | | |
Sbjct 1316 CACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGAACGTCACCAGCGTGGTGATGTCGCCC 1375
Query 14515 TCGTTCAGATAGCCGGCGTCCGTTGCCGGGTCTTGCAAATCCCACGACACGTCCGCGCTG 14574
||||| || |||||| || || ||||| || |||| |||||| ||| ||| | |
Sbjct 1376 TCGTTGAGGATGCCGGCATCGGTGGCCGGATCCTGCAGATCCCAATGCACATCCTTGGAG 1435
Query 14575 ATGCCGGTCACGCCGTTGACGACGACGTTCGACAGCGTCTTGTGCCAGCCGATGTCGTTG 14634
|||||||| ||||| ||| ||||| ||||| ||||||||||||| ||| ||
Sbjct 1436 ATGCCGGTGACGCCAGCCACGGGCACGTTGGACAGGCTCTTGTGCCAGCCCTGTTCGGTG 1495
Query 14635 TCGATCTTCGCGCGCAGGCC 14654
|||||||| || ||||||||
Sbjct 1496 TCGATCTTGGCACGCAGGCC 1515
Score = 91.5 bits (100), Expect = 4e-14
Identities = 230/341 (67%), Gaps = 9/341 (3%)
Strand=Plus/Plus
Query 13098 AGTCGTCCATGTCGCGCGGTGTCCAGCCGAACACCGTCGCGACGTCGGCCATCGCGTCTT 13157
|| ||||||| || ||| | |||| ||| | | ||||| |||||||||||| || |
Sbjct 16 AGCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTCGGCCATCGCATCCT 75
Query 13158 CTACGCGTTCTGGGATTCCATGCTCGCTTTCAGCGCCTTCGGC-ATCAAAAAACCGGCAA 13216
|||||| || || | ||| ||| | || | ||||||||| | |||||||| ||
Sbjct 76 CTACGCAGTCGGGAAATCC--GCT-TCCCTCTGGGCCTTCGGCAAGAAAAAAACCTGC-- 130
Query 13217 AAATAC-CCCCCAATGCCACGAGGTCGGCCGGGTCCATCAACGTGACATCCATTTCGGTC 13275
| | | || | |||| ||||||||||| |||||| |||| || ||||
Sbjct 131 ACCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGACGTCGGCGGTGGTC 190
Query 13276 AGCGTCGGCGTGGTGATGCGCGGGAGTA-CCTTGCGCAGCGCGTCCACGTCGAGATTCAC 13334
||||| |||| || ||||| || || | |||| ||||||| || || || | ||
Sbjct 191 AGCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGC-CAGCGCGGTGACATCCAGCTGCAG 249
Query 13335 GAGCGCCGCGAGCGACGTGCCGCGCAGTGCGCCGGCGGACGGCTTCGCGAGGGTCACGTG 13394
| | | |||| |||||||||| |||| ||| ||||| || | | ||
Sbjct 250 CACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTGCGGACCTTGAGGTC 309
Query 13395 CGTGATGGGCTGGTCGCCGTGCATGATCGGCGTGTCGAAGG 13435
||||||| ||| |||||| || |||| ||| ||||| ||
Sbjct 310 GGTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAGGG 350
>seq6336
Length=1727
Score = 122 bits (134), Expect = 2e-23
Identities = 244/352 (69%), Gaps = 20/352 (6%)
Strand=Plus/Plus
Query 29115 CCTAGGGACGAACTCGCGCACCGCGCAGTCGTATCACGGCAATCTGTACTTCGACGAATA 29174
||| ||||| || | |||||||| ||| || ||||||||| | |||||||||||||
Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420
Query 29175 TTTCTGGGTGCCGAAG--TTCCGCGAGCTGAATACCGTTGCGTCGGGCATGGCGATGCAC 29232
|||||| || | | ||| ||| |||| | || || |||||||||||||||
Sbjct 1421 CTTCTGGA--CCTACGGGTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCAC 1478
Query 29233 AAACGCTGGCGGCTGACCTACTTCAGCACGCCGTCGAGTACGACCCATGAAGCCTACGCG 29292
|| ||||| ||||||||||||||| || ||||| | | |||| || |||||| ||
Sbjct 1479 AAGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACG 1538
Query 29293 TTCTGGAGCGGCGCCGATGCGAATCGTGGGCGCGCGCCTAGCG-ATCGTATCCAGATCGA 29351
|| |||| ||||| | || | | |||| || ||| | || |||||||||||
Sbjct 1539 TTTTGGACCGGCG-AGCGCCGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGA 1597
Query 29352 ---CACGAGCCACGAAGCGCTCGTGCGAGGCATGCTGGGCGAGGA-CGAGCAGTGGCGTC 29407
| || ||||| ||||| | | || | || |||| || || ||||| |
Sbjct 1598 TGTCTCG---CACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGC-CTGGCGGC 1653
Query 29408 AGATCGTCACCGTACTCGATGCGATCGAGGGC---GGCTGCGACTTGTTCGA 29456
||||||||| | | ||||| || | || || ||||||||| |||||||
Sbjct 1654 AGATCGTCAACATCCTCGACGC---CCAGCGCCGTGGCTGCGACCTGTTCGA 1702
Score = 114 bits (126), Expect = 3e-21
Identities = 274/409 (67%), Gaps = 4/409 (1%)
Strand=Plus/Plus
Query 28582 GAGCGCATCGAGGCGGCGGCCGAAACGCGCCTGATGGTCCTGATTGCGAAGGACAAGAAG 28641
|||||||||| | || |||| ||||| || | || |||||| |||| | |||
Sbjct 930 GAGCGCATCGGTGGCGCACTCGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGAAAAG 989
Query 28642 GACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGACAGATCGAGCGGCTCGCGCGC 28701
||||| || | ||||||||| || ||||| || ||| | ||||| | ||||||
Sbjct 990 TCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGCGCGC 1049
Query 28702 GTGCAGAAATACGG-GGAGACGGGGAAGGAAGGCGACCTGAACCCGAACATTGCCGCGCG 28760
| ||| ||| || | ||| || |||| ||| ||||| ||| | ||| ||
Sbjct 1050 ATCCAGCGCTACCAAGGCGGCGGC-AACGAAGCCGATCTGAATCCGGCTGTCGCCAATCG 1108
Query 28761 CAATGCCGGGCCGAAGCGCAAGCCGCCGAAAAACGAAATCAGCGAGGAACAGGAAGAGCG 28820
||| || | ||| ||| || || | ||||| ||| || ||||||| ||||
Sbjct 1109 CAACGCTGCGCCAAAGAAAAAACCCAAGCGCAACGACTTCACTGAAGAACAGGTCGAGCA 1168
Query 28821 GATCGTGAAGGCGTTCCGCGAATCACTG-TTCGACTACCAGAAGGTCTGGTATCGAAACG 28879
| | | |||||| ||| ||| |||||||||||| | ||||| || ||
Sbjct 1169 GCTGACCACCGCGTTCGTCGACGG-CTGCTTCGACTACCAGCGCGATTGGTACCGGGCCG 1227
Query 28880 GCGATCAGCAGACGCGCAATATCCTGAAGTCACGGCAGATCGGCGCCACCTGGTATTTCG 28939
|| | ||| || |||| ||||| ||||| || |||||||| || || | || ||||
Sbjct 1228 GCAACGAGCGCACCCGCATCATCCTCAAGTCGCGCCAGATCGGTGCAACGTTTTACTTCG 1287
Query 28940 CACGCGAGGCATTCGTCGACGCGCTCGATACCGGCCGCAACCAGATTTT 28988
| ||||| || | |||| |||||| ||||| ||||| ||||||||
Sbjct 1288 CTCGCGAAGCGCTGATCGATGCGCTCACCACCGGGCGCAATCAGATTTT 1336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129635791838444
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