Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_015273.1
Length=32317
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 443 4e-120
seq6336 179 8e-41
>seq6992
Length=1569
Score = 443 bits (490), Expect = 4e-120
Identities = 758/1095 (69%), Gaps = 21/1095 (2%)
Strand=Plus/Plus
Query 11630 CCGATCGCGCTGCGCAGGTCGGCGAGCAGGTCGTCGCCGTTCACGACTTCGACCATGTTG 11689
||||| |||| ||| | ||| ||||| || ||||||| |||| |||| ||||||
Sbjct 431 CCGATGGCGCGGCGGTGAGGGGCAAGCAGATCCACGCCGTTGACGATCTCGATCATGTTC 490
Query 11690 ATGAGGTCGATTTCGACGAGCGTTTCGCCGTTTACGGTGAGCTTGTAATAGCTGCACGTC 11749
|| | ||||| |||| | | ||||||| | | |||||||| |||||| || |
Sbjct 491 ATCAAATCGATCTCGATTACGGGCACGCCGTTGATACTCAGCTTGTAGTAGCTGGCCGAC 550
Query 11750 GTCGAAACCTTGAACGCCGTATCGTCGCCGGGCTTCGCGTTGCCGAAATCGATTTCCTTG 11809
||| ||| ||| | || || ||||||| ||| || | ||| ||| || ||||||
Sbjct 551 GTCTTGACCGAAAACTCGGTGTCATCGCCGGACTTGCCGGTACCGGGATCAATCTCCTTG 610
Query 11810 TGACGGCCGCGCACGACGATTTCGATTGCGTCGTGCTTCGTCGAATCCTCG-GCTCGATA 11868
|||||||||||||| || ||||| | || || || || ||||| ||| ||| | ||
Sbjct 611 TGACGGCCGCGCACAACAATTTCCACCGCATCCACCTCGGTGGAATCGTCGCGCTGG-TA 669
Query 11869 CGCGCCGGCGAATCGCAGTTGCACGCCGTCATGCTTGAGCGTGCCGTATTGCGCGAGTAC 11928
|||||||| || ||||| |||||| ||| ||| || | |||||| || |||||
Sbjct 670 GGCGCCGGCAAAGCGCAGCTGCACGGCGTTGTGCGTGGTGGCGCCGTACTGATTCAGTAC 729
Query 11929 CGACTTGATAAAGCCGCCGGCCGTCCATTCGAAAGCGATCGCCTCTTGCCCTTGATCGAT 11988
|| | ||||||| | ||||||||| ||||| ||| || || |||||
Sbjct 730 GCTGCGCATCAGGCCGCCGCACTTCCATTCGAGCTCGATCTTCTCCTGGCCGAAGTCGAT 789
Query 11989 ATCGATCGGGCCATTCGTGCCGCCGCCGCGCCATGCTTCCATCTTGCGCGAGAGCTTCGG 12048
|||| |||||||||| | ||||||||||| | | ||||||||||| || ||| | ||
Sbjct 790 GTCGACCGGGCCATTCATACCGCCGCCGCGATACTCCTCCATCTTGCGGGACAGCGTGGG 849
Query 12049 CAGCCCGACTTCTGCAATCTGTCCGGCGAAGTTTTCGCCGTTCTGGAACAGATTGAAGTT 12108
|||| ||||| | | ||| ||| || | || |||| | |||||| ||||
Sbjct 850 CAGCTTCACTTCGACCACCTGGCCGAGATAGCTCTCACCGTCGTTGAACAGGTTGAGCGC 909
Query 12109 CTTCAGTTTCTTCGGCAATGCCATG---TTC-------ATTTACTCCCTA---GTTATGC 12155
|| |||||||| ||||| |||||| ||| || | | |||| ||
Sbjct 910 TTTGAGTTTCTTGGGCAAAGCCATGGGGTTCTCCGGGAATCTGAGGCGGGTGCGTTACGC 969
Query 12156 CGTGACGCGCGCGGCGAAATCGGCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAG 12215
||||||| ||||||| ||||| ||||| | | |||||| | | |||| ||
Sbjct 970 GTTGACGCGTTCGGCGAAGTCGGCCAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAA 1029
Query 12216 GTTTTCGATCGGCGGAACGGGCGTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAG 12275
||| || | ||| || || |||||||||||||||||||| |||| ||| | |||
Sbjct 1030 GTTCTCCAGCGGTGGCACCGGCGTGTAGTCGTAATCGATGCGCAGCGCGCCATCGGCGAG 1089
Query 12276 CGATTCGACGGGGTTCGCGCTGTCGTCGTACCAAGCCGAGCCGCCGAGCAGATAGCCGTT 12335
|| | || ||| | || |||||||||| || | | ||| || |||||
Sbjct 1090 CGTGGTGGCGCTGTTGACCATGCCGTCGTACCAGGCGTTGGCATCGATCAAGTAGCCCGA 1149
Query 12336 TGCGATCAGCTCGCGGAATTTCGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGG 12395
| |||| |||||||| || |||||||| ||||||||| || | || | ||| ||
Sbjct 1150 CGACTTCAGGTCGCGGAACTTGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGG 1209
Query 12396 GTGCATCGGCTTGTCGACATAAA---CCATGTGTGCTTCCGCCATCGTGTCGGCGAGCAC 12452
||||||||| |||||||| || | ||| | |||| || || |||||||| || |
Sbjct 1210 GTGCATCGGTTTGTCGACGTAGAACGCCACGC---CTTCGGCGATGGTGTCGGCCAGGAT 1266
Query 12453 TTGCGCGGTGCGCGTGTAGTTCTCGAATGCGAACAGCGGATCATCCGAGCAGGTGCGCGA 12512
||||||||||||||| ||||||| ||||||| || |||| ||| ||||||||
Sbjct 1267 CTGCGCGGTGCGCGTGGCCGTCTCGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGA 1326
Query 12513 ACCCCAGAAGCGATAGCCCGTCGAGTTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTA 12572
||||||||||| | ||| | | | | ||||| || | ||| ||||||||||
Sbjct 1327 TCCCCAGAAGCGCTGGCCGTTGAACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGAT 1386
Query 12573 GCCGGCATCGGTCGCGGGGTCTTGCAAGTCCCAGAAAACATCCTTGCTGATACCCGTAAC 12632
|||||||||||| || || || |||| ||||| ||||||||| ||| || || ||
Sbjct 1387 GCCGGCATCGGTGGCCGGATCCTGCAGATCCCAATGCACATCCTTGGAGATGCCGGTGAC 1446
Query 12633 GCCATTGATGCCGACATTCGAAATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGC 12692
|||| | | || || || | |||||||||||||| ||| ||||||||||||
Sbjct 1447 GCCAGCCACGGGCACGTTGGACAGGCTCTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGC 1506
Query 12693 GCGCAAGCCGAGCGC 12707
|||| |||||||||
Sbjct 1507 ACGCAGGCCGAGCGC 1521
Score = 104 bits (114), Expect = 5e-18
Identities = 232/340 (68%), Gaps = 9/340 (3%)
Strand=Plus/Plus
Query 11168 GCCGTCCATATCGCGCGGTGTCCAGTGAAAAACCGTCGCGATATCGGCCATCGCTTCTTC 11227
||||||||| || ||| | |||||| || | | |||||| ||||||||||| || ||
Sbjct 17 GCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTCGGCCATCGCATCCTC 76
Query 11228 AACGTGGTCGGGGATGCCG-TGCTCTAGCTCGCCCGCTTCGGC-AGCAAAAAAGATGCGA 11285
||| |||||| | ||| | | || || | | ||||||| || |||||| ||| |
Sbjct 77 TACGCAGTCGGGAAATCCGCTTCCCT--CTGGGC--CTTCGGCAAGAAAAAAACCTGC-A 131
Query 11286 ACGCCACCCCCAATTGCACGAGGTCGGCGGGGTCGAGCTGCTGCACGTCGAATTCGGTGA 11345
| || || | || |||||||| || || | | | |||||| ||| |
Sbjct 132 CCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGACGTCGGCGGTGGTCA 191
Query 11346 GGGTCGGCGACGAGATGCGCGGCAACA-CCTTGCCGAGCGCGTCGACGTCCAGATTCACG 11404
| || ||||| || ||||| |||| || ||||| |||||| ||| ||||| | ||
Sbjct 192 GCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGCC-AGCGCGGTGACATCCAGCTGCAGC 250
Query 11405 AGCGCATTGAGCGACGTGCCGCGCAGCTCGCCGGCGGCCGGCTTACGCAAGGTGATTTCG 11464
| | ||||| ||||||||| ||||| ||| | ||||| || | ||| |||
Sbjct 251 ACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTGCGGACCTTGAGGTCG 310
Query 11465 GTGATTTCCTGTTCGCCGCGCTTGATCGGGGCGTCGAGGG 11504
||||| ||| ||||||||| |||| || ||||||||
Sbjct 311 GTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAGGG 350
>seq6336
Length=1727
Score = 179 bits (198), Expect = 8e-41
Identities = 262/368 (71%), Gaps = 2/368 (1%)
Strand=Plus/Plus
Query 25445 CCTCGGCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGAGTA 25504
|||||| || ||| | || || || ||| |||| |||||||||||||| |||||||| |
Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420
Query 25505 TTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCACAA 25564
|| ||| |||||| | | | |||||||| || |||||||||||||||||
Sbjct 1421 CTTCTGGACCTACGGGTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACAA 1480
Query 25565 GAAATGGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACCTT 25624
||| ||||| ||||| || || || || |||||||| | |||||||| ||||| ||
Sbjct 1481 GAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGTT 1540
Query 25625 CTGGAGTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGATAT 25684
|||| ||||||| | ||||| |||| | ||| | | || || ||||| |
Sbjct 1541 TTGGACCGGCGAGCGCCGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGATGT 1600
Query 25685 TTCGCACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACAGTTTCGCCAGATCGT 25744
|||||| ||||| || |||| || | |||| |||| || | || ||||||||
Sbjct 1601 CTCGCACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGCCTGGCGGCAGATCGT 1660
Query 25745 GACGGTCGAGGATG-CCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCC 25803
| || || | || |||| | || |||||| |||||||||||||||||||||||
Sbjct 1661 CAACATCCTCGACGCCCAGCGCC-GTGGCTGCGACCTGTTCGATATCGACGAGCTGCGCG 1719
Query 25804 TTGAATAC 25811
||||||
Sbjct 1720 AGGAATAC 1727
Score = 120 bits (132), Expect = 6e-23
Identities = 330/502 (66%), Gaps = 14/502 (3%)
Strand=Plus/Plus
Query 23864 AAACTCGATCACGGTTTCGTCGGCGACCGTGAAAAGGTTCGTCGGCGATACCTTGCGGCC 23923
||| || | | ||||||| |||||||| ||||| ||||| ||| || |||||| |
Sbjct 101 AAATTCCAGCGCGGTTTCCTCGGCGACGGTGAACAGGTTGCCCGGTGACTGCTTGCGATC 160
Query 23924 GGAGAACGGCGAGGCGGTCGGGTTCTGAGCTG-CGAAAGAAAGGATTTCGGTGCCGAGGC 23982
|| ||||| ||| |||||||| |||| |||| || || |||||| ||||
Sbjct 161 GGCCAACGGGTTGGCCTCGGGGTTCTG-GCTGGCGAAGCTGAGCATGGAGGTGCCCAGGC 219
Query 23983 TCGCGGGGCTATCGGTCACGGCGAGGCCGATGAGATACGCCTGTTTCGTGTCGGCGAATG 24042
| || || ||||| || || ||||||| ||||||||||| |||| |||||||
Sbjct 220 TGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGTGTTGGCGAATT 279
Query 24043 ACGGGTCGATTTCGCACGAGGTGTAAATCTTTTGCTTCGCCTTCGTCATCGCGACCAGCT 24102
| | | ||| |||||| | ||| ||||| | ||| | || | || ||| |
Sbjct 280 TCTCCTGCACCTCGATGCTGGTGTAGAGCTTCTGCTTGGACTTGTTGATGGTGATCAGGT 339
Query 24103 CGGCAGTCGGCTCGATTTGCGCGAACAGTCC---GAGCT---TGCCGGCGAATTCGCCCG 24156
|||| ||||||||||| || || ||||| | | ||| |||| ||| ||| ||
Sbjct 340 CGGCGGTCGGCTCGATCTGGGCAAACAGCGCCAGGCGCTTGGTGCCATCGATCTCGACC- 398
Query 24157 TGAGTTCTTGCGTTTCGACCGCGAGCACGTCGCCGTATGCCTTGAACGGGCCATCGGGCA 24216
|||| | || || || || ||||| || || |||||| || ||||
Sbjct 399 -----TCTTCGGCTTTCACTGCAGTGACATCGCCATACGCACGGAACGGCGAGTCCGGCA 453
Query 24217 CGATGCCGCGATAGTGTTCGAGGTTCACGCGTGCGCCGTATTTCGTCGGCGAGTAGTTCG 24276
| || ||| ||| |||| | ||| ||| ||| || | |||| | |
Sbjct 454 GCAGGCTGCGCATGTGCTCGATCCAGATGCGGGCGTTGTAGGTCTCACGGTTGTAGGTGG 513
Query 24277 CGGCAATCTGTTCGAGCCATGCGCGCTCGATCACGCGGCCGTCAGTCGTCGCGCCTTCGA 24336
|||| || | |||| ||| ||| | |||| |||||| || || || ||||||||||
Sbjct 514 CGGCCATGTCGTCGATCCAGCTGCGTTGGATCGTGCGGCCATCGGTGGTGGCGCCTTCGA 573
Query 24337 CGGCGATGCGGAACATCTTGGA 24358
|||| | ||||||| |||||
Sbjct 574 CGGCCACGCGGAACCAGTTGGA 595
Score = 113 bits (124), Expect = 9e-21
Identities = 315/478 (66%), Gaps = 13/478 (3%)
Strand=Plus/Plus
Query 24870 TGGAAACAGCGCGACGAGTGGGACAAGGCCGCCCCGATCGAGCGCATCGA-GTCGTCGCT 24928
||||| ||| ||||||||||| || | | | |||||||||| | || | ||
Sbjct 891 TGGAAGTCGCGTGACGAGTGGGATCGCGCAGACAACGTTGAGCGCATCGGTGGCG-CACT 949
Query 24929 TGAAACGCGCCTCGCGGTGCTCATTGCCAAGCCGGTAAAGACGGGCAGCGACTTCAAGGA 24988
||| ||||| | | ||||| ||| ||||||| |||| | ||| |||| ||||||||
Sbjct 950 CGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGAAAAGTCCGGCGGCGATTTCAAGGA 1009
Query 24989 AATCGACTTGCTCGGCCGTCAGGTCGAGCGGCTTGCACGCGT---GCGCAAGTACGGCGA 25045
||| || |||| || ||| | ||||| | || ||| | |||| | | ||||
Sbjct 1010 AATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGCGCGCATCCAGCGCTACCAAGGCGG 1069
Query 25046 AACGGGGAAAGAGAGCGACTTAAACCCGAACATCGAGGCGCGCAACAAAGCGCCCCGTAA 25105
|| || || ||| | || ||| ||| |||||| ||||| ||
Sbjct 1070 C---GGCAACGAAGCCGATCTGAATCCGGCTGTCGCCAATCGCAACGCTGCGCC----AA 1122
Query 25106 AGAAAAGGCCGCC-CGCAACGATTTCAGCGACGAGCAGATCGCACGGCTTCACGAGGCCT 25164
|||||| || |||||||| |||| || || ||| ||| | ||| | || |
Sbjct 1123 AGAAAAAACCCAAGCGCAACGACTTCACTGAAGAACAGGTCGAGCAGCTGACCACCGCGT 1182
Query 25165 TTCTTGATTGCCAGTTCGGTTATCAAAAGGTGTGGTATCGAAACGGCCATCAGCGCACGC 25224
| | || || |||| || || | ||||| || |||| | ||||||| |
Sbjct 1183 TCGTCGACGGCTGCTTCGACTACCAGCGCGATTGGTACCGGGCCGGCAACGAGCGCACCC 1242
Query 25225 GCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTTCTATTTCGCACGCGAGGCGCTAG 25284
||| ||| ||||||||||| |||||||| || ||||| || ||||| ||||| |||||
Sbjct 1243 GCATCATCCTCAAGTCGCGCCAGATCGGTGCAACGTTTTACTTCGCTCGCGAAGCGCTGA 1302
Query 25285 ACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCTATCGGCCAGCAAGGCGCAGGC 25342
|||||| | || | |||||||||||||| | ||| ||||||||||||
Sbjct 1303 TCGATGCGCTCACCACCGGGCGCAATCAGATTTTCTTGAGCGCCTCCAAGGCGCAGGC 1360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 103277975288228
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