Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq6992 443 4e-120 seq6336 179 8e-41 >seq6992 Length=1569 Score = 443 bits (490), Expect = 4e-120 Identities = 758/1095 (69%), Gaps = 21/1095 (2%) Strand=Plus/Plus Query 11630 CCGATCGCGCTGCGCAGGTCGGCGAGCAGGTCGTCGCCGTTCACGACTTCGACCATGTTG 11689 ||||| |||| ||| | ||| ||||| || ||||||| |||| |||| |||||| Sbjct 431 CCGATGGCGCGGCGGTGAGGGGCAAGCAGATCCACGCCGTTGACGATCTCGATCATGTTC 490 Query 11690 ATGAGGTCGATTTCGACGAGCGTTTCGCCGTTTACGGTGAGCTTGTAATAGCTGCACGTC 11749 || | ||||| |||| | | ||||||| | | |||||||| |||||| || | Sbjct 491 ATCAAATCGATCTCGATTACGGGCACGCCGTTGATACTCAGCTTGTAGTAGCTGGCCGAC 550 Query 11750 GTCGAAACCTTGAACGCCGTATCGTCGCCGGGCTTCGCGTTGCCGAAATCGATTTCCTTG 11809 ||| ||| ||| | || || ||||||| ||| || | ||| ||| || |||||| Sbjct 551 GTCTTGACCGAAAACTCGGTGTCATCGCCGGACTTGCCGGTACCGGGATCAATCTCCTTG 610 Query 11810 TGACGGCCGCGCACGACGATTTCGATTGCGTCGTGCTTCGTCGAATCCTCG-GCTCGATA 11868 |||||||||||||| || ||||| | || || || || ||||| ||| ||| | || Sbjct 611 TGACGGCCGCGCACAACAATTTCCACCGCATCCACCTCGGTGGAATCGTCGCGCTGG-TA 669 Query 11869 CGCGCCGGCGAATCGCAGTTGCACGCCGTCATGCTTGAGCGTGCCGTATTGCGCGAGTAC 11928 |||||||| || ||||| |||||| ||| ||| || | |||||| || ||||| Sbjct 670 GGCGCCGGCAAAGCGCAGCTGCACGGCGTTGTGCGTGGTGGCGCCGTACTGATTCAGTAC 729 Query 11929 CGACTTGATAAAGCCGCCGGCCGTCCATTCGAAAGCGATCGCCTCTTGCCCTTGATCGAT 11988 || | ||||||| | ||||||||| ||||| ||| || || ||||| Sbjct 730 GCTGCGCATCAGGCCGCCGCACTTCCATTCGAGCTCGATCTTCTCCTGGCCGAAGTCGAT 789 Query 11989 ATCGATCGGGCCATTCGTGCCGCCGCCGCGCCATGCTTCCATCTTGCGCGAGAGCTTCGG 12048 |||| |||||||||| | ||||||||||| | | ||||||||||| || ||| | || Sbjct 790 GTCGACCGGGCCATTCATACCGCCGCCGCGATACTCCTCCATCTTGCGGGACAGCGTGGG 849 Query 12049 CAGCCCGACTTCTGCAATCTGTCCGGCGAAGTTTTCGCCGTTCTGGAACAGATTGAAGTT 12108 |||| ||||| | | ||| ||| || | || |||| | |||||| |||| Sbjct 850 CAGCTTCACTTCGACCACCTGGCCGAGATAGCTCTCACCGTCGTTGAACAGGTTGAGCGC 909 Query 12109 CTTCAGTTTCTTCGGCAATGCCATG---TTC-------ATTTACTCCCTA---GTTATGC 12155 || |||||||| ||||| |||||| ||| || | | |||| || Sbjct 910 TTTGAGTTTCTTGGGCAAAGCCATGGGGTTCTCCGGGAATCTGAGGCGGGTGCGTTACGC 969 Query 12156 CGTGACGCGCGCGGCGAAATCGGCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAG 12215 ||||||| ||||||| ||||| ||||| | | |||||| | | |||| || Sbjct 970 GTTGACGCGTTCGGCGAAGTCGGCCAGGTAGCTGGTGGTGATCTTCTTGTACAGCTGCAA 1029 Query 12216 GTTTTCGATCGGCGGAACGGGCGTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAG 12275 ||| || | ||| || || |||||||||||||||||||| |||| ||| | ||| Sbjct 1030 GTTCTCCAGCGGTGGCACCGGCGTGTAGTCGTAATCGATGCGCAGCGCGCCATCGGCGAG 1089 Query 12276 CGATTCGACGGGGTTCGCGCTGTCGTCGTACCAAGCCGAGCCGCCGAGCAGATAGCCGTT 12335 || | || ||| | || |||||||||| || | | ||| || ||||| Sbjct 1090 CGTGGTGGCGCTGTTGACCATGCCGTCGTACCAGGCGTTGGCATCGATCAAGTAGCCCGA 1149 Query 12336 TGCGATCAGCTCGCGGAATTTCGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGG 12395 | |||| |||||||| || |||||||| ||||||||| || | || | ||| || Sbjct 1150 CGACTTCAGGTCGCGGAACTTGGCGTTGATCGTTTCGATCAGATCCCTGACCAGCGAGGG 1209 Query 12396 GTGCATCGGCTTGTCGACATAAA---CCATGTGTGCTTCCGCCATCGTGTCGGCGAGCAC 12452 ||||||||| |||||||| || | ||| | |||| || || |||||||| || | Sbjct 1210 GTGCATCGGTTTGTCGACGTAGAACGCCACGC---CTTCGGCGATGGTGTCGGCCAGGAT 1266 Query 12453 TTGCGCGGTGCGCGTGTAGTTCTCGAATGCGAACAGCGGATCATCCGAGCAGGTGCGCGA 12512 ||||||||||||||| ||||||| ||||||| || |||| ||| |||||||| Sbjct 1267 CTGCGCGGTGCGCGTGGCCGTCTCGAAGGCGAACATGTTGTCCTCCGCGCACGTGCGCGA 1326 Query 12513 ACCCCAGAAGCGATAGCCCGTCGAGTTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTA 12572 ||||||||||| | ||| | | | | ||||| || | ||| |||||||||| Sbjct 1327 TCCCCAGAAGCGCTGGCCGTTGAACGTCACCAGCGTGGTGATGTCGCCCTCGTTGAGGAT 1386 Query 12573 GCCGGCATCGGTCGCGGGGTCTTGCAAGTCCCAGAAAACATCCTTGCTGATACCCGTAAC 12632 |||||||||||| || || || |||| ||||| ||||||||| ||| || || || Sbjct 1387 GCCGGCATCGGTGGCCGGATCCTGCAGATCCCAATGCACATCCTTGGAGATGCCGGTGAC 1446 Query 12633 GCCATTGATGCCGACATTCGAAATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGC 12692 |||| | | || || || | |||||||||||||| ||| |||||||||||| Sbjct 1447 GCCAGCCACGGGCACGTTGGACAGGCTCTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGC 1506 Query 12693 GCGCAAGCCGAGCGC 12707 |||| ||||||||| Sbjct 1507 ACGCAGGCCGAGCGC 1521 Score = 104 bits (114), Expect = 5e-18 Identities = 232/340 (68%), Gaps = 9/340 (3%) Strand=Plus/Plus Query 11168 GCCGTCCATATCGCGCGGTGTCCAGTGAAAAACCGTCGCGATATCGGCCATCGCTTCTTC 11227 ||||||||| || ||| | |||||| || | | |||||| ||||||||||| || || Sbjct 17 GCCGTCCATTTCAGACGGCGGCCAGTGGAAGATGGCCGCGATGTCGGCCATCGCATCCTC 76 Query 11228 AACGTGGTCGGGGATGCCG-TGCTCTAGCTCGCCCGCTTCGGC-AGCAAAAAAGATGCGA 11285 ||| |||||| | ||| | | || || | | ||||||| || |||||| ||| | Sbjct 77 TACGCAGTCGGGAAATCCGCTTCCCT--CTGGGC--CTTCGGCAAGAAAAAAACCTGC-A 131 Query 11286 ACGCCACCCCCAATTGCACGAGGTCGGCGGGGTCGAGCTGCTGCACGTCGAATTCGGTGA 11345 | || || | || |||||||| || || | | | |||||| ||| | Sbjct 132 CCTCCTGGCCTACCGCCAGCAGGTCGGCCGGATCCATCGCATTGACGTCGGCGGTGGTCA 191 Query 11346 GGGTCGGCGACGAGATGCGCGGCAACA-CCTTGCCGAGCGCGTCGACGTCCAGATTCACG 11404 | || ||||| || ||||| |||| || ||||| |||||| ||| ||||| | || Sbjct 192 GCGTGGGCGAGGAAATGCGAGGCAGCAGTGTTGCC-AGCGCGGTGACATCCAGCTGCAGC 250 Query 11405 AGCGCATTGAGCGACGTGCCGCGCAGCTCGCCGGCGGCCGGCTTACGCAAGGTGATTTCG 11464 | | ||||| ||||||||| ||||| ||| | ||||| || | ||| ||| Sbjct 251 ACGTCGGTGAGCTTGAGGCCGCGCAGTTCGCCTGCGCCGGGCTTGCGGACCTTGAGGTCG 310 Query 11465 GTGATTTCCTGTTCGCCGCGCTTGATCGGGGCGTCGAGGG 11504 ||||| ||| ||||||||| |||| || |||||||| Sbjct 311 GTGATGGTCTGCTCGCCGCGCGTGATGGGCTGGTCGAGGG 350 >seq6336 Length=1727 Score = 179 bits (198), Expect = 8e-41 Identities = 262/368 (71%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 25445 CCTCGGCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGAGTA 25504 |||||| || ||| | || || || ||| |||| |||||||||||||| |||||||| | Sbjct 1361 CCTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 1420 Query 25505 TTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCACAA 25564 || ||| |||||| | | | |||||||| || ||||||||||||||||| Sbjct 1421 CTTCTGGACCTACGGGTTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACAA 1480 Query 25565 GAAATGGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACCTT 25624 ||| ||||| ||||| || || || || |||||||| | |||||||| ||||| || Sbjct 1481 GAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGTT 1540 Query 25625 CTGGAGTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGATAT 25684 |||| ||||||| | ||||| |||| | ||| | | || || ||||| | Sbjct 1541 TTGGACCGGCGAGCGCCGCAACAAGGGCAAGCCGGCGGCGCAGCGGATCCAGATCGATGT 1600 Query 25685 TTCGCACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACAGTTTCGCCAGATCGT 25744 |||||| ||||| || |||| || | |||| |||| || | || |||||||| Sbjct 1601 CTCGCACGACGCGCTGGCCGGCGGTCGCCGCTGCCAGGACCGCGCCTGGCGGCAGATCGT 1660 Query 25745 GACGGTCGAGGATG-CCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCC 25803 | || || | || |||| | || |||||| ||||||||||||||||||||||| Sbjct 1661 CAACATCCTCGACGCCCAGCGCC-GTGGCTGCGACCTGTTCGATATCGACGAGCTGCGCG 1719 Query 25804 TTGAATAC 25811 |||||| Sbjct 1720 AGGAATAC 1727 Score = 120 bits (132), Expect = 6e-23 Identities = 330/502 (66%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 23864 AAACTCGATCACGGTTTCGTCGGCGACCGTGAAAAGGTTCGTCGGCGATACCTTGCGGCC 23923 ||| || | | ||||||| |||||||| ||||| ||||| ||| || |||||| | Sbjct 101 AAATTCCAGCGCGGTTTCCTCGGCGACGGTGAACAGGTTGCCCGGTGACTGCTTGCGATC 160 Query 23924 GGAGAACGGCGAGGCGGTCGGGTTCTGAGCTG-CGAAAGAAAGGATTTCGGTGCCGAGGC 23982 || ||||| ||| |||||||| |||| |||| || || |||||| |||| Sbjct 161 GGCCAACGGGTTGGCCTCGGGGTTCTG-GCTGGCGAAGCTGAGCATGGAGGTGCCCAGGC 219 Query 23983 TCGCGGGGCTATCGGTCACGGCGAGGCCGATGAGATACGCCTGTTTCGTGTCGGCGAATG 24042 | || || ||||| || || ||||||| ||||||||||| |||| ||||||| Sbjct 220 TGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGTGTTGGCGAATT 279 Query 24043 ACGGGTCGATTTCGCACGAGGTGTAAATCTTTTGCTTCGCCTTCGTCATCGCGACCAGCT 24102 | | | ||| |||||| | ||| ||||| | ||| | || | || ||| | Sbjct 280 TCTCCTGCACCTCGATGCTGGTGTAGAGCTTCTGCTTGGACTTGTTGATGGTGATCAGGT 339 Query 24103 CGGCAGTCGGCTCGATTTGCGCGAACAGTCC---GAGCT---TGCCGGCGAATTCGCCCG 24156 |||| ||||||||||| || || ||||| | | ||| |||| ||| ||| || Sbjct 340 CGGCGGTCGGCTCGATCTGGGCAAACAGCGCCAGGCGCTTGGTGCCATCGATCTCGACC- 398 Query 24157 TGAGTTCTTGCGTTTCGACCGCGAGCACGTCGCCGTATGCCTTGAACGGGCCATCGGGCA 24216 |||| | || || || || ||||| || || |||||| || |||| Sbjct 399 -----TCTTCGGCTTTCACTGCAGTGACATCGCCATACGCACGGAACGGCGAGTCCGGCA 453 Query 24217 CGATGCCGCGATAGTGTTCGAGGTTCACGCGTGCGCCGTATTTCGTCGGCGAGTAGTTCG 24276 | || ||| ||| |||| | ||| ||| ||| || | |||| | | Sbjct 454 GCAGGCTGCGCATGTGCTCGATCCAGATGCGGGCGTTGTAGGTCTCACGGTTGTAGGTGG 513 Query 24277 CGGCAATCTGTTCGAGCCATGCGCGCTCGATCACGCGGCCGTCAGTCGTCGCGCCTTCGA 24336 |||| || | |||| ||| ||| | |||| |||||| || || || |||||||||| Sbjct 514 CGGCCATGTCGTCGATCCAGCTGCGTTGGATCGTGCGGCCATCGGTGGTGGCGCCTTCGA 573 Query 24337 CGGCGATGCGGAACATCTTGGA 24358 |||| | ||||||| ||||| Sbjct 574 CGGCCACGCGGAACCAGTTGGA 595 Score = 113 bits (124), Expect = 9e-21 Identities = 315/478 (66%), Gaps = 13/478 (3%) Strand=Plus/Plus Query 24870 TGGAAACAGCGCGACGAGTGGGACAAGGCCGCCCCGATCGAGCGCATCGA-GTCGTCGCT 24928 ||||| ||| ||||||||||| || | | | |||||||||| | || | || Sbjct 891 TGGAAGTCGCGTGACGAGTGGGATCGCGCAGACAACGTTGAGCGCATCGGTGGCG-CACT 949 Query 24929 TGAAACGCGCCTCGCGGTGCTCATTGCCAAGCCGGTAAAGACGGGCAGCGACTTCAAGGA 24988 ||| ||||| | | ||||| ||| ||||||| |||| | ||| |||| |||||||| Sbjct 950 CGAAGCGCGCTTGGTTGTGCTGATTATGAAGCCGGAAAAGTCCGGCGGCGATTTCAAGGA 1009 Query 24989 AATCGACTTGCTCGGCCGTCAGGTCGAGCGGCTTGCACGCGT---GCGCAAGTACGGCGA 25045 ||| || |||| || ||| | ||||| | || ||| | |||| | | |||| Sbjct 1010 AATTGATCTGCTGCATCGGCAGTTGGAGCGCCAGGCGCGCATCCAGCGCTACCAAGGCGG 1069 Query 25046 AACGGGGAAAGAGAGCGACTTAAACCCGAACATCGAGGCGCGCAACAAAGCGCCCCGTAA 25105 || || || ||| | || ||| ||| |||||| ||||| || Sbjct 1070 C---GGCAACGAAGCCGATCTGAATCCGGCTGTCGCCAATCGCAACGCTGCGCC----AA 1122 Query 25106 AGAAAAGGCCGCC-CGCAACGATTTCAGCGACGAGCAGATCGCACGGCTTCACGAGGCCT 25164 |||||| || |||||||| |||| || || ||| ||| | ||| | || | Sbjct 1123 AGAAAAAACCCAAGCGCAACGACTTCACTGAAGAACAGGTCGAGCAGCTGACCACCGCGT 1182 Query 25165 TTCTTGATTGCCAGTTCGGTTATCAAAAGGTGTGGTATCGAAACGGCCATCAGCGCACGC 25224 | | || || |||| || || | ||||| || |||| | ||||||| | Sbjct 1183 TCGTCGACGGCTGCTTCGACTACCAGCGCGATTGGTACCGGGCCGGCAACGAGCGCACCC 1242 Query 25225 GCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTTCTATTTCGCACGCGAGGCGCTAG 25284 ||| ||| ||||||||||| |||||||| || ||||| || ||||| ||||| ||||| Sbjct 1243 GCATCATCCTCAAGTCGCGCCAGATCGGTGCAACGTTTTACTTCGCTCGCGAAGCGCTGA 1302 Query 25285 ACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCTATCGGCCAGCAAGGCGCAGGC 25342 |||||| | || | |||||||||||||| | ||| |||||||||||| Sbjct 1303 TCGATGCGCTCACCACCGGGCGCAATCAGATTTTCTTGAGCGCCTCCAAGGCGCAGGC 1360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103277975288228