Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq5311 93.3 5e-14
seq5177 86.0 8e-12
seq5297 82.4 9e-11
>seq5311
Length=2084
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 161148 AGGATATTAAATCCTTCTGCATATGCTTGCATGATTCCGTATTCAATTCCATTATGAACC 161207
|| || | ||| ||||||||| | || ||||| || ||||| ||||| |||||||| |||
Sbjct 1069 AGAATTTCAAAGCCTTCTGCAAAAGCCTGCATCATGCCGTACTCAATGCCATTATGCACC 1010
Query 161208 ATCTTTACAAAATGTCCTGCACCAGGATCACCACAATACAT 161248
|| || ||||||| || ||||| ||||||||||||| ||
Sbjct 1009 ATTTTGGCAAAATGACCCGCACCGTGATCACCACAATAAAT 969
>seq5177
Length=2144
Score = 86.0 bits (94), Expect = 8e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 154142 ATATACTAGAAGGCATCCGTTTCTACGTATCGTTTGCTTGTTCGTTCGCTTTCGGTGAAA 154201
|||| || |||| ||||| |||||||| || || || || ||||| || | ||
Sbjct 566 ATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTTGCCGAGC 625
Query 154202 ACAAACTGATGGAAGGCAATGCTAAGATCATTTCTCTCATTGCGAGAGATGAATCGCAGC 154261
||| ||||||||||||| || |||||||| || |||||| | |||||| | | ||
Sbjct 626 GCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAAGCCCTGC 685
Query 154262 ACATGACCATCACTCAGAACATTCTAAACA 154291
|| ||||| ||| ||| |||| || ||||
Sbjct 686 ACCTGACCGGCACCCAGCACATGCTCAACA 715
>seq5297
Length=2090
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 163497 ATTCCTCTATAGCTCAGTTGGTAGAGCACGGAACTGTTAATTCTGTTGTCCCTGGTTCGA 163556
||||||| |||||||||| |||||||| | | ||||||||| | |||||||||||||
Sbjct 1243 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1302
Query 163557 GTCCAGGTGGAGGAG 163571
| |||||| ||||||
Sbjct 1303 GCCCAGGTTGAGGAG 1317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611603588026800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |