Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq5311 93.3 5e-14 seq5177 86.0 8e-12 seq5297 82.4 9e-11 >seq5311 Length=2084 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 161148 AGGATATTAAATCCTTCTGCATATGCTTGCATGATTCCGTATTCAATTCCATTATGAACC 161207 || || | ||| ||||||||| | || ||||| || ||||| ||||| |||||||| ||| Sbjct 1069 AGAATTTCAAAGCCTTCTGCAAAAGCCTGCATCATGCCGTACTCAATGCCATTATGCACC 1010 Query 161208 ATCTTTACAAAATGTCCTGCACCAGGATCACCACAATACAT 161248 || || ||||||| || ||||| ||||||||||||| || Sbjct 1009 ATTTTGGCAAAATGACCCGCACCGTGATCACCACAATAAAT 969 >seq5177 Length=2144 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 154142 ATATACTAGAAGGCATCCGTTTCTACGTATCGTTTGCTTGTTCGTTCGCTTTCGGTGAAA 154201 |||| || |||| ||||| |||||||| || || || || ||||| || | || Sbjct 566 ATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTTGCCGAGC 625 Query 154202 ACAAACTGATGGAAGGCAATGCTAAGATCATTTCTCTCATTGCGAGAGATGAATCGCAGC 154261 ||| ||||||||||||| || |||||||| || |||||| | |||||| | | || Sbjct 626 GCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAAGCCCTGC 685 Query 154262 ACATGACCATCACTCAGAACATTCTAAACA 154291 || ||||| ||| ||| |||| || |||| Sbjct 686 ACCTGACCGGCACCCAGCACATGCTCAACA 715 >seq5297 Length=2090 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 163497 ATTCCTCTATAGCTCAGTTGGTAGAGCACGGAACTGTTAATTCTGTTGTCCCTGGTTCGA 163556 ||||||| |||||||||| |||||||| | | ||||||||| | ||||||||||||| Sbjct 1243 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1302 Query 163557 GTCCAGGTGGAGGAG 163571 | |||||| |||||| Sbjct 1303 GCCCAGGTTGAGGAG 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611603588026800