Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7203 277 2e-69 seq4369 187 3e-42 seq3759 138 1e-27 >seq7203 Length=1522 Score = 277 bits (306), Expect = 2e-69 Identities = 628/928 (68%), Gaps = 45/928 (5%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGA-ATT--CTCTTCATTAGAATTCATTACTCCCAT 18668 |||||| || |||| | || ||||| ||| ||||| | ||| ||| || ||| Sbjct 616 TTAAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGA---CATAACACCCGC 672 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||| ||||| | || | |||||| |||||||| ||||| || | ||| || || || Sbjct 673 TTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAAT-CA 731 Query 18729 T-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT---TCTA 18784 | ||||| ||||| || ||||| | ||||||| ||||| || | ||||||| || | Sbjct 732 TATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCA 791 Query 18785 ATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTA 18844 | || | ||| || ||||| | ||| ||| | ||| | || |||||| || | Sbjct 792 AAAGGTG---ATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAA 848 Query 18845 TTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA 18904 | || ||||||||| ||||| || | ||||||| ||| || | |||||| ||| | Sbjct 849 TCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCT--TT 906 Query 18905 TAATAGATACAACTCTATCTTCATTAGGAGGGT-ATAGAAG------ATGTT-----TAA 18952 | || || | | ||| |||||| ||| | |||| || Sbjct 907 CACTAAATCGTAGATTTTCT-------GAGGGTCATACTTGTTCTGAATGTAATTAGTAT 959 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 | | |||||| ||||| |||| |||| || || || | | || || |||||||| | Sbjct 960 ATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGA 1019 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCA 19071 |||| | ||| ||||| | || | |||||| ||||||||||| || ||| ||||| || Sbjct 1020 ATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGAATGAGCCT 1078 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| ||||||||||| | ||||| || | || | || |||| || || Sbjct 1079 GAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGC--GGTCAATAA--AGTTTC- 1133 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 |||| |||||| || |||||||| || || || |||||||| || || ||| Sbjct 1134 -CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCT 1192 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 || | ||||| | | |||||| | | ||||| | ||| | ||| |||| | Sbjct 1193 ATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAGAAGC 1252 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||| ||||||||||||| ||||| || ||||| || || || |||||| ||||| Sbjct 1253 GAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCT 1312 Query 19312 TCTGTTATCTGTACTTCA-CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 || | | ||||| | | ||||| | | |||| ||||||||||| || ||||| Sbjct 1313 TCGGCAAATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCATTAACGATACCATC 1371 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT 19430 | ||| |||||||| || |||||||| ||||||||| ||| | | | | | Sbjct 1372 AGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCT 1431 Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 | ||| || || | ||| |||| |||| |||||| ||||||| || |||||||| Sbjct 1432 TTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTC 1491 Query 19491 TGCTTTTTTATACATGTTCCATATATCA 19518 ||||||||| | | ||| |||||| Sbjct 1492 ATGTTTTTTATAAAATTGCCAGATATCA 1519 >seq4369 Length=2652 Score = 187 bits (206), Expect = 3e-42 Identities = 396/586 (68%), Gaps = 14/586 (2%) Strand=Plus/Minus Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 ||||||||||||||||| || ||||| | | |||||||||||||| || || ||||| Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||| | || | |||||| ||||| | |||||| || | || || |||||||| Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 || || || || || |||| || | || || | || | || || | || Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTC----TTCT--AT 2445 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 ||| ||||||||||| | || ||||| | || || || |||| ||| | ||| Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAA 2385 Query 19203 TAGATACATACGCTCATCT---GTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || || | || ||| | ||| |||| ||||| ||| ||||| | | ||| | Sbjct 2384 TA---ACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGT 2328 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || | ||| || ||||| || ||||||||||| || | ||| | ||| || | | Sbjct 2327 CTCAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCAC 2268 Query 19320 CTGTACTTCACT-ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 ||| || || | | ||||| | | | | || ||||| ||||| ||||| ||| | Sbjct 2267 CTGCACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCG 2209 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAAT 19438 |||| || || || | ||| ||| |||||| ||||||| ||| | ||||||| Sbjct 2208 CAAAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAAT 2149 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || || | || ||||| | ||||||| | |||||||| || || || ||||||| Sbjct 2148 CCGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTT 2089 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||||| | |||||||||| || | || ||| ||| ||||| Sbjct 2088 TATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAA 2043 >seq3759 Length=3256 Score = 138 bits (152), Expect = 1e-27 Identities = 448/689 (65%), Gaps = 15/689 (2%) Strand=Plus/Minus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTA-ACCCAGGACATTCATTAGGAC 48174 |||||| || | || || || ||||||||||| | | || || |||| || | Sbjct 1560 ATATAAATTTTTGAAATCGTCTCCATACACATTTGCAAGTCCTGGGGCATTTGCCGGGTC 1501 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 | | || ||||||| |||| ||||| | |||||||| |||||| | ||||| Sbjct 1500 A-AACAGACACCAATCGGCATCGGCCTTTACCTTCTCCATAAATAGATCTGGCACCCAAA 1442 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 | | ||| ||||| || | || | |||||| || ||| ||| | ||| || | Sbjct 1441 GTCCGTAAAACAAATCTCTCGCTCGCATTTCTTCTTTTCCATGATTTTTACGAAGATCCA 1382 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||| || | ||||| |||||||| || || | |||||| || | ||| || || Sbjct 1381 GAAACTCAAAGATATCTGCATGCCAAGGCTCCAGATATATAGCAAATACTCCCTTTC--- 1325 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | || ||| | ||||||| |||||| ||||| | ||| | || | | ||| || || | Sbjct 1324 TTTTTCCTGCCTGATCTACATATCTCGCAGTTTCGTTGAACACACGAAGCATAGGCACGA 1265 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 ||||| || | ||| ||| |||| ||||| || | || | |||| | || Sbjct 1264 TACCAGAAGAGACACCGTTGTTTCCTTTGATATACGAACCGCGTGCACGAATATCATGAA 1205 Query 48475 T-TGA----AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 | ||| | ||| | | ||| | | || || || |||||| | ||| | || Sbjct 1204 TATGAACAGACAACCCAGA--ACCAGAC---TTGGAAATAAGAGCAGTCTCTTTCAAAGT 1150 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 |||||||| || || | ||| || || ||||| | ||||||||| |||||| || Sbjct 1149 GTCATAAATCCCATCCAGACTGTCGTCCTTCATAGCCACTAGAAAACAGGAAGACATCTG 1090 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 || || ||| || || ||||| ||||| | ||| ||||| |||| || || || Sbjct 1089 AGGCTGCGTAGTACCAGAGTTAAACAATGTAGCAGAGGCATGGGTAAATAATCCCTGCGA 1030 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 | || | ||| || || | | ||||| || || ||||| | || ||| Sbjct 1029 CATCATATCATAGGTACGAAGCGCGCTCTGAATATCTTCTTTGTGAATACCAAGAGCTAC 970 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | ||| | || || || || | || || | || ||||| ||||| | | ||| Sbjct 969 CCTCATAAGCAAATGCTGCGGGCGCTCTACCACTTCCTTATTCATTTTTAGTAAATAACT 910 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGT 48798 || |||||||||||||| |||||||||| Sbjct 909 CTTCTCCAATGTTTTAAATCCAAAATAGT 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562023879413040