Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq7203 277 2e-69
seq4369 187 3e-42
seq3759 138 1e-27
>seq7203
Length=1522
Score = 277 bits (306), Expect = 2e-69
Identities = 628/928 (68%), Gaps = 45/928 (5%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGA-ATT--CTCTTCATTAGAATTCATTACTCCCAT 18668
|||||| || |||| | || ||||| ||| ||||| | ||| ||| || |||
Sbjct 616 TTAAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGA---CATAACACCCGC 672
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
|||||| ||||| | || | |||||| |||||||| ||||| || | ||| || || ||
Sbjct 673 TTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAAT-CA 731
Query 18729 T-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT---TCTA 18784
| ||||| ||||| || ||||| | ||||||| ||||| || | ||||||| || |
Sbjct 732 TATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCA 791
Query 18785 ATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTA 18844
| || | ||| || ||||| | ||| ||| | ||| | || |||||| || |
Sbjct 792 AAAGGTG---ATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAA 848
Query 18845 TTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA 18904
| || ||||||||| ||||| || | ||||||| ||| || | |||||| ||| |
Sbjct 849 TCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCT--TT 906
Query 18905 TAATAGATACAACTCTATCTTCATTAGGAGGGT-ATAGAAG------ATGTT-----TAA 18952
| || || | | ||| |||||| ||| | |||| ||
Sbjct 907 CACTAAATCGTAGATTTTCT-------GAGGGTCATACTTGTTCTGAATGTAATTAGTAT 959
Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012
| | |||||| ||||| |||| |||| || || || | | || || |||||||| |
Sbjct 960 ATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGA 1019
Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCA 19071
|||| | ||| ||||| | || | |||||| ||||||||||| || ||| ||||| ||
Sbjct 1020 ATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGAATGAGCCT 1078
Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131
|| ||||| ||||||||||| | ||||| || | || | || |||| || ||
Sbjct 1079 GAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGC--GGTCAATAA--AGTTTC- 1133
Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191
|||| |||||| || |||||||| || || || |||||||| || || |||
Sbjct 1134 -CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCT 1192
Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251
|| | ||||| | | |||||| | | ||||| | ||| | ||| |||| |
Sbjct 1193 ATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAGAAGC 1252
Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311
||| ||||||||||||| ||||| || ||||| || || || |||||| |||||
Sbjct 1253 GAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCT 1312
Query 19312 TCTGTTATCTGTACTTCA-CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370
|| | | ||||| | | ||||| | | |||| ||||||||||| || |||||
Sbjct 1313 TCGGCAAATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCATTAACGATACCATC 1371
Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT 19430
| ||| |||||||| || |||||||| ||||||||| ||| | | | | |
Sbjct 1372 AGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCT 1431
Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490
| ||| || || | ||| |||| |||| |||||| ||||||| || ||||||||
Sbjct 1432 TTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTC 1491
Query 19491 TGCTTTTTTATACATGTTCCATATATCA 19518
||||||||| | | ||| ||||||
Sbjct 1492 ATGTTTTTTATAAAATTGCCAGATATCA 1519
>seq4369
Length=2652
Score = 187 bits (206), Expect = 3e-42
Identities = 396/586 (68%), Gaps = 14/586 (2%)
Strand=Plus/Minus
Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022
||||||||||||||||| || ||||| | | |||||||||||||| || || |||||
Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559
Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082
||||| | || | |||||| ||||| | |||||| || | || || ||||||||
Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499
Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142
|| || || || || |||| || | || || | || | || || | ||
Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTC----TTCT--AT 2445
Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202
||| ||||||||||| | || ||||| | || || || |||| ||| | |||
Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAA 2385
Query 19203 TAGATACATACGCTCATCT---GTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259
|| || | || ||| | ||| |||| ||||| ||| ||||| | | ||| |
Sbjct 2384 TA---ACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGT 2328
Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319
|| | ||| || ||||| || ||||||||||| || | ||| | ||| || | |
Sbjct 2327 CTCAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCAC 2268
Query 19320 CTGTACTTCACT-ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378
||| || || | | ||||| | | | | || ||||| ||||| ||||| ||| |
Sbjct 2267 CTGCACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCG 2209
Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAAT 19438
|||| || || || | ||| ||| |||||| ||||||| ||| | |||||||
Sbjct 2208 CAAAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAAT 2149
Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498
| || || | || ||||| | ||||||| | |||||||| || || || |||||||
Sbjct 2148 CCGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTT 2089
Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
|||||| | |||||||||| || | || ||| ||| |||||
Sbjct 2088 TATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAA 2043
>seq3759
Length=3256
Score = 138 bits (152), Expect = 1e-27
Identities = 448/689 (65%), Gaps = 15/689 (2%)
Strand=Plus/Minus
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTA-ACCCAGGACATTCATTAGGAC 48174
|||||| || | || || || ||||||||||| | | || || |||| || |
Sbjct 1560 ATATAAATTTTTGAAATCGTCTCCATACACATTTGCAAGTCCTGGGGCATTTGCCGGGTC 1501
Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234
| | || ||||||| |||| ||||| | |||||||| |||||| | |||||
Sbjct 1500 A-AACAGACACCAATCGGCATCGGCCTTTACCTTCTCCATAAATAGATCTGGCACCCAAA 1442
Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294
| | ||| ||||| || | || | |||||| || ||| ||| | ||| || |
Sbjct 1441 GTCCGTAAAACAAATCTCTCGCTCGCATTTCTTCTTTTCCATGATTTTTACGAAGATCCA 1382
Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354
|||| || | ||||| |||||||| || || | |||||| || | ||| || ||
Sbjct 1381 GAAACTCAAAGATATCTGCATGCCAAGGCTCCAGATATATAGCAAATACTCCCTTTC--- 1325
Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414
| || ||| | ||||||| |||||| ||||| | ||| | || | | ||| || || |
Sbjct 1324 TTTTTCCTGCCTGATCTACATATCTCGCAGTTTCGTTGAACACACGAAGCATAGGCACGA 1265
Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474
||||| || | ||| ||| |||| ||||| || | || | |||| | ||
Sbjct 1264 TACCAGAAGAGACACCGTTGTTTCCTTTGATATACGAACCGCGTGCACGAATATCATGAA 1205
Query 48475 T-TGA----AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529
| ||| | ||| | | ||| | | || || || |||||| | ||| | ||
Sbjct 1204 TATGAACAGACAACCCAGA--ACCAGAC---TTGGAAATAAGAGCAGTCTCTTTCAAAGT 1150
Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589
|||||||| || || | ||| || || ||||| | ||||||||| |||||| ||
Sbjct 1149 GTCATAAATCCCATCCAGACTGTCGTCCTTCATAGCCACTAGAAAACAGGAAGACATCTG 1090
Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649
|| || ||| || || ||||| ||||| | ||| ||||| |||| || || ||
Sbjct 1089 AGGCTGCGTAGTACCAGAGTTAAACAATGTAGCAGAGGCATGGGTAAATAATCCCTGCGA 1030
Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709
| || | ||| || || | | ||||| || || ||||| | || |||
Sbjct 1029 CATCATATCATAGGTACGAAGCGCGCTCTGAATATCTTCTTTGTGAATACCAAGAGCTAC 970
Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769
| ||| | || || || || | || || | || ||||| ||||| | | |||
Sbjct 969 CCTCATAAGCAAATGCTGCGGGCGCTCTACCACTTCCTTATTCATTTTTAGTAAATAACT 910
Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGT 48798
|| |||||||||||||| ||||||||||
Sbjct 909 CTTCTCCAATGTTTTAAATCCAAAATAGT 881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562023879413040
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