Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1795 116 3e-20
seq119 89.7 4e-12
>seq1795
Length=8984
Score = 116 bits (128), Expect = 3e-20
Identities = 359/545 (66%), Gaps = 9/545 (2%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||||| || || || || || || || || ||||| || | || ||
Sbjct 1208 GGCATCGATTTGGGCACGACGTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTGGAG 1267
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|||||||| || || ||||| ||| | || || ||||| ||||| | || ||||| |
Sbjct 1268 ATTATTGCGAACGACCAAGGAAACCGCACGACGCCATCGTATGTGGCGTTTACGGAGTCA 1327
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177
|| | | | ||||||||||||| || | |||| || || | ||| || |
Sbjct 1328 GAGCGTCTGATTGGTGATGCAGCGAAGAACCAAGTTGCTATGAACGCACACAACACGGTG 1387
Query 550178 TTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAGATAT 550236
|| ||||| || ||||| || ||| | ||||||| |||| | || ||| | || ||
Sbjct 1388 TTCGATGCCAAGCGTTTGATCGGACGCAAGTTTTC-TGATCCAGAAGTGCAGTCGGACAT 1446
Query 550237 GAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTG--GA-AAACCTTATATTGAAGCTAC 550293
|| || ||||| ||| | | | | ||| | || |||||| | | |||| | |
Sbjct 1447 TAAACACTGGCCGTTCAAGGTGACTCGAGATTCGGCGGACAAACCTCAGGTGGAAG-TGC 1505
Query 550294 TCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGA 550352
| || | | | || | || || || || | || || || ||||| | || |
Sbjct 1506 AGTTTAAAGGTGAGACCAAAAGGTTCCAGCCTGAGGAGATCTCGTCCATGGTGCTGATCA 1565
Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAATAACT 550411
| ||| | | || |||| | |||| |||| |||| | | ||||||| | ||
Sbjct 1566 AGATGCGTGAGATTGCGGAAGCTTATATTGG-CAAGCAAGTGAGGAATGCAGTGGTGACG 1624
Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471
|| || ||||| || || ||||| |||||||| || || |||||||||||| ||||||
Sbjct 1625 GTCCCTGCATACTTCAACGACTCGCAACGTCAGGCGACCAAAGATGCTGGAGCCATTGCT 1684
Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531
|| | || || || ||||||||||| || || || ||||| || | || || || ||
Sbjct 1685 GGTTTGAACGTGCTGCGTATTATCAACGAGCCAACGGCTGCCGCGATCGCCTACGGCCTG 1744
Query 550532 GATAA 550536
|| ||
Sbjct 1745 GACAA 1749
>seq119
Length=53999
Score = 89.7 bits (98), Expect = 4e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || || || |||||||||||||| || ||||| || || ||||| || || |||
Sbjct 20340 ACGGTCCCGGCCTATTTTAATGACTCGCAGCGTCAGGCGACGAAAGACGCCGGCAAAATT 20399
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||||||| | || || |||||||| |||||||| || || |||||| | || || ||
Sbjct 20400 GCTGGACTGGACGTGCTCCGTATTATTAATGAACCCACGGCCGCTGCATTGGCGTACGG 20458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028656837812140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |