Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1795 116 3e-20 seq119 89.7 4e-12 >seq1795 Length=8984 Score = 116 bits (128), Expect = 3e-20 Identities = 359/545 (66%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||||| || || || || || || || || ||||| || | || || Sbjct 1208 GGCATCGATTTGGGCACGACGTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTGGAG 1267 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 |||||||| || || ||||| ||| | || || ||||| ||||| | || ||||| | Sbjct 1268 ATTATTGCGAACGACCAAGGAAACCGCACGACGCCATCGTATGTGGCGTTTACGGAGTCA 1327 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | | | ||||||||||||| || | |||| || || | ||| || | Sbjct 1328 GAGCGTCTGATTGGTGATGCAGCGAAGAACCAAGTTGCTATGAACGCACACAACACGGTG 1387 Query 550178 TTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAGATAT 550236 || ||||| || ||||| || ||| | ||||||| |||| | || ||| | || || Sbjct 1388 TTCGATGCCAAGCGTTTGATCGGACGCAAGTTTTC-TGATCCAGAAGTGCAGTCGGACAT 1446 Query 550237 GAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTG--GA-AAACCTTATATTGAAGCTAC 550293 || || ||||| ||| | | | | ||| | || |||||| | | |||| | | Sbjct 1447 TAAACACTGGCCGTTCAAGGTGACTCGAGATTCGGCGGACAAACCTCAGGTGGAAG-TGC 1505 Query 550294 TCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | || | | | || | || || || || | || || || ||||| | || | Sbjct 1506 AGTTTAAAGGTGAGACCAAAAGGTTCCAGCCTGAGGAGATCTCGTCCATGGTGCTGATCA 1565 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAATAACT 550411 | ||| | | || |||| | |||| |||| |||| | | ||||||| | || Sbjct 1566 AGATGCGTGAGATTGCGGAAGCTTATATTGG-CAAGCAAGTGAGGAATGCAGTGGTGACG 1624 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || ||||| || || ||||| |||||||| || || |||||||||||| |||||| Sbjct 1625 GTCCCTGCATACTTCAACGACTCGCAACGTCAGGCGACCAAAGATGCTGGAGCCATTGCT 1684 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || | || || || ||||||||||| || || || ||||| || | || || || || Sbjct 1685 GGTTTGAACGTGCTGCGTATTATCAACGAGCCAACGGCTGCCGCGATCGCCTACGGCCTG 1744 Query 550532 GATAA 550536 || || Sbjct 1745 GACAA 1749 >seq119 Length=53999 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || |||||||||||||| || ||||| || || ||||| || || ||| Sbjct 20340 ACGGTCCCGGCCTATTTTAATGACTCGCAGCGTCAGGCGACGAAAGACGCCGGCAAAATT 20399 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||||| | || || |||||||| |||||||| || || |||||| | || || || Sbjct 20400 GCTGGACTGGACGTGCTCCGTATTATTAATGAACCCACGGCCGCTGCATTGGCGTACGG 20458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028656837812140