Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_016571.1
Length=284757
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 480 1e-130
>seq5177
Length=2144
Score = 480 bits (532), Expect = 1e-130
Identities = 753/1065 (71%), Gaps = 23/1065 (2%)
Strand=Plus/Minus
Query 207857 TTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTG 207916
|||||| || |||||||| | |||||| || | |||||||||||| || || || ||
Sbjct 1059 TTCTGAATCAATCTGACCGATCAGGTAGGAGCTGAGTTCTACTTCCTGCGGGGCGACTTG 1000
Query 207917 AACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTG-- 207974
||| | || | ||||||| | ||| ||||||||||| ||||| |||| |||
Sbjct 999 TACGGTATCTGACGCCAGCCAGGTGTTGATCCATGGAATCGGGTTGCTTTTGGCATTGGG 940
Query 207975 -AATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTG 208033
|||| |||||| | || ||||||| ||||||| ||||| |||||||||||
Sbjct 939 GAATGCGGCTGGCAAACCAACCGAGGCCATACGGCTGTTGGTGATGTATTCAACATACTG 880
Query 208034 GCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCA 208093
||||||||| ||||||||||| || ||||| || |||||||| ||||| || || |||||
Sbjct 879 GCAGAGGATGTCTTTGTTCAGGCCTATCATGGAGCCATCTTTAAACAGGTATTCTGCCCA 820
Query 208094 CTCTTTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGC 208153
| |||||| |||| |||| | |||||| ||| | |||||||| | | || ||
Sbjct 819 TTGTTTTTCCTGCTCGGCGGCGGTTTTGAACATCTCGAAACACTCTTGATGCAATTCAGC 760
Query 208154 TGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTG 208213
|||||||| || | ||| || || |||| ||| || ||| | ||||| ||||||||
Sbjct 759 GGCAATCTCGGCGAACTCGGGGTCGTCTTGACCGGAACGCATGATGTTGAGCATGTGCTG 700
Query 208214 AGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACC 208273
|| || || ||| || ||||| ||||| || |||| ||||||||| ||||| ||
Sbjct 699 GGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCC 640
Query 208274 TTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAAT 208333
|||||||| ||| || |||||||| ||||||||||| |||||| |||||||| || ||
Sbjct 639 TTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGAT 580
Query 208334 AGCTTCAAGTGAGTTGA--TAGATTGCAG--AGCCAGGTACAGTGCTTTCTTAATAGCAC 208389
||||| || || | | || ||| ||| |||| || ||| || | | |
Sbjct 579 CGCTTCCAGGATATTCACGTTCAT--CAGGCAGC--GGTAAAGCAGTTTTTTCAGCTCGC 524
Query 208390 GAAGATTAAC--ATTAACCTTCTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATA 208447
| || || ||| | |||||||||| | ||| ||||| ||||| | |
Sbjct 523 GTTTGTTGACCGATT--TGGTTTCGCCATTGATGATGTGCTCACCTTCGCCCAGCTGTGA 466
Query 208448 GTACTGGTTGATCAAGGCAATCAGTTTGTCGTAGTAATG---GGAAACAGATGCAGCACG 208504
||| | || || | ||||||| ||||| ||||| | | | ||||| || ||
Sbjct 465 ATACAGCATGGTCTGGTGGATCAGTTCATCGTAATAATGCGCGATATCCGATGC-GCGCG 407
Query 208505 TTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGAT 208564
|||| | ||| || || | ||||||||| | ||||| ||||| || |||||
Sbjct 406 --CGGTGATGTTTTCATTGCGCACGATGTCATCAAAAATGATGGAGGGATCATTGACGAT 349
Query 208565 GTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTC 208624
||| | |||||| || || || || ||| ||||| || || || ||||||| ||
Sbjct 348 GTTGCGGATGATATGGGTGTACGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTC 289
Query 208625 AGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACG 208684
||| ||||| | ||| || | || | ||| || || || ||||| || | |||
Sbjct 288 TATCCAGGTTTCAATCTCAGGCAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACG 229
Query 208685 GCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTC 208744
||||||||| || ||||| || ||||| || || ||||| |||||||| | ||| || ||
Sbjct 228 GCCCTGGATGGAATCCAGCAGCGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTC 169
Query 208745 GTGATCTGGTAAAGCCATG-TAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGAC 208803
|| || || | ||| || || ||| |||||| | || ||||| || ||||| ||||
Sbjct 168 ATGCTC-GGGCAGGCCCTGATAATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGAC 110
Query 208804 GCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGT 208863
|||||||||| || ||||||||||| || ||||| || || | | || ||||| ||||
Sbjct 109 GCCAGAAGAATGACAGTTGTTTCTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGT 50
Query 208864 CGTAACGAGAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTT 208908
| || || | ||||||||| ||||| | |||||| ||||||
Sbjct 49 CATACCGCGCCACGTTGACGGGCTGACCAAAGAACATCGGTTCTT 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 910956756413520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |