Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq5177 480 1e-130 >seq5177 Length=2144 Score = 480 bits (532), Expect = 1e-130 Identities = 753/1065 (71%), Gaps = 23/1065 (2%) Strand=Plus/Minus Query 207857 TTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTG 207916 |||||| || |||||||| | |||||| || | |||||||||||| || || || || Sbjct 1059 TTCTGAATCAATCTGACCGATCAGGTAGGAGCTGAGTTCTACTTCCTGCGGGGCGACTTG 1000 Query 207917 AACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTG-- 207974 ||| | || | ||||||| | ||| ||||||||||| ||||| |||| ||| Sbjct 999 TACGGTATCTGACGCCAGCCAGGTGTTGATCCATGGAATCGGGTTGCTTTTGGCATTGGG 940 Query 207975 -AATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTG 208033 |||| |||||| | || ||||||| ||||||| ||||| ||||||||||| Sbjct 939 GAATGCGGCTGGCAAACCAACCGAGGCCATACGGCTGTTGGTGATGTATTCAACATACTG 880 Query 208034 GCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCA 208093 ||||||||| ||||||||||| || ||||| || |||||||| ||||| || || ||||| Sbjct 879 GCAGAGGATGTCTTTGTTCAGGCCTATCATGGAGCCATCTTTAAACAGGTATTCTGCCCA 820 Query 208094 CTCTTTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGC 208153 | |||||| |||| |||| | |||||| ||| | |||||||| | | || || Sbjct 819 TTGTTTTTCCTGCTCGGCGGCGGTTTTGAACATCTCGAAACACTCTTGATGCAATTCAGC 760 Query 208154 TGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTG 208213 |||||||| || | ||| || || |||| ||| || ||| | ||||| |||||||| Sbjct 759 GGCAATCTCGGCGAACTCGGGGTCGTCTTGACCGGAACGCATGATGTTGAGCATGTGCTG 700 Query 208214 AGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACC 208273 || || || ||| || ||||| ||||| || |||| ||||||||| ||||| || Sbjct 699 GGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCC 640 Query 208274 TTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAAT 208333 |||||||| ||| || |||||||| ||||||||||| |||||| |||||||| || || Sbjct 639 TTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGAT 580 Query 208334 AGCTTCAAGTGAGTTGA--TAGATTGCAG--AGCCAGGTACAGTGCTTTCTTAATAGCAC 208389 ||||| || || | | || ||| ||| |||| || ||| || | | | Sbjct 579 CGCTTCCAGGATATTCACGTTCAT--CAGGCAGC--GGTAAAGCAGTTTTTTCAGCTCGC 524 Query 208390 GAAGATTAAC--ATTAACCTTCTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATA 208447 | || || ||| | |||||||||| | ||| ||||| ||||| | | Sbjct 523 GTTTGTTGACCGATT--TGGTTTCGCCATTGATGATGTGCTCACCTTCGCCCAGCTGTGA 466 Query 208448 GTACTGGTTGATCAAGGCAATCAGTTTGTCGTAGTAATG---GGAAACAGATGCAGCACG 208504 ||| | || || | ||||||| ||||| ||||| | | | ||||| || || Sbjct 465 ATACAGCATGGTCTGGTGGATCAGTTCATCGTAATAATGCGCGATATCCGATGC-GCGCG 407 Query 208505 TTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGAT 208564 |||| | ||| || || | ||||||||| | ||||| ||||| || ||||| Sbjct 406 --CGGTGATGTTTTCATTGCGCACGATGTCATCAAAAATGATGGAGGGATCATTGACGAT 349 Query 208565 GTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTC 208624 ||| | |||||| || || || || ||| ||||| || || || ||||||| || Sbjct 348 GTTGCGGATGATATGGGTGTACGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTC 289 Query 208625 AGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACG 208684 ||| ||||| | ||| || | || | ||| || || || ||||| || | ||| Sbjct 288 TATCCAGGTTTCAATCTCAGGCAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACG 229 Query 208685 GCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTC 208744 ||||||||| || ||||| || ||||| || || ||||| |||||||| | ||| || || Sbjct 228 GCCCTGGATGGAATCCAGCAGCGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTC 169 Query 208745 GTGATCTGGTAAAGCCATG-TAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGAC 208803 || || || | ||| || || ||| |||||| | || ||||| || ||||| |||| Sbjct 168 ATGCTC-GGGCAGGCCCTGATAATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGAC 110 Query 208804 GCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGT 208863 |||||||||| || ||||||||||| || ||||| || || | | || ||||| |||| Sbjct 109 GCCAGAAGAATGACAGTTGTTTCTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGT 50 Query 208864 CGTAACGAGAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTT 208908 | || || | ||||||||| ||||| | |||||| |||||| Sbjct 49 CATACCGCGCCACGTTGACGGGCTGACCAAAGAACATCGGTTCTT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910956756413520